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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1048 fasta sequence
[ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAGGAATGT]
[+] EMBL CNS08DUB [ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACC ]
[-] EMBL CNS08DUA [ ggggggGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCTTTCTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAGGAATGT]
[-] EMBL CNS08WR8 [ ACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTGATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTAC ]
consensusID : consensus_5002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAGATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTGTGCAC]
[+] EMBL CNS08WR9 [TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAGATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTGTGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5002#0 ------------------------------------------------------------
consensus_5002#1 TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAG 60
consensus_5002#0 --------------------------------------ATTAATCAGTTCTGCAAATTGG 22
consensus_5002#1 ATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACC-GCAAATTGG 119
* *** * * *********
consensus_5002#0 TCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAA 82
consensus_5002#1 TCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAA 179
************************************************************
consensus_5002#0 GGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACT 142
consensus_5002#1 GGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACT 239
************************************************************
consensus_5002#0 GAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAG 202
consensus_5002#1 GAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAG 299
************************************************************
consensus_5002#0 AGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAA 262
consensus_5002#1 AGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAA 359
************************************************************
consensus_5002#0 TACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAAT 322
consensus_5002#1 TACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAAT 419
************************************************************
consensus_5002#0 CACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACT 382
consensus_5002#1 CACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACT 479
******************** ***************** ******************
consensus_5002#0 GTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCG 442
consensus_5002#1 GTGCAC------------------------------------------------------ 485
******
consensus_5002#0 GAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTAT 502
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTT 562
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 TTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAA 622
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 AGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCAC 682
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCA 742
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 TTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTA 802
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTG 862
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCT 922
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 TCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTG 982
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 CCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAG 1042
consensus_5002#1 ------------------------------------------------------------
consensus_5002#0 GAATGT 1048
consensus_5002#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||