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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[TGCTTCTCCCGACAACATGCTGCAGCAAAATGCCCTTGCGAGAAACGATGCCAAGTATGCTCCAAGAAACACCATACGATGCTGCATGTCGAAAGCAATGGGAGTGAGAAGTAACTATCAGGTTATCATCGCACCCCATTCACCATGCCCATTCGTTCCTGCTTCGTGTCGCTCCGTGATCGCATCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGCGACCTCGCACCTGCTCCGGTCCTCATCTTTCCTGAGCGGNGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCT]
[+] EMBL BX623159 [TGCTTCTCCCGACAACATGCTGCAGCAAAATGCCCTTGCGAGAAACGATGCCAAGTATGCTCCAAGAAACACCATACGATGCTGCATGTCGAAAGCAATGGGAGTGAGAAGTAACTATCAGGTTATCATCGCACCCCATTCACCATGCCCATTCGTTCCTGCTTCGTGTCGCTCCGTGATCGCATCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGCGACCTCGCACCTGCTCCGGTCCTCATCTTTCCTGAGCGGNGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCT]
consensusID : consensus_5007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CAGAATCCCCCGAGGTTTGTTCTGAGCGGTGCTATGTTCCTGCTTNGTGCCTGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTAGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGNACCGTGTGACCTCGGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGACCGTGCGACTCGCACCTGGTCCGGTCCTCATCGTTCCTGAGCGGTGCCTATGTTCCTGCTTCGTGCCGCTCCGGTGATTGCACCTGCATCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGCTGTCGCTCCGNGATCGCACTGTGCCGTCCA]
[+] EMBL AL693109 [CAGAATCCCCCGAGGTTTGTTCTGAGCGGTGCTATGTTCCTGCTTNGTGCCTGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTAGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGNACCGTGTGACCTCGGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGACCGTGCGACTCGCACCTGGTCCGGTCCTCATCGTTCCTGAGCGGTGCCTATGTTCCTGCTTCGTGCCGCTCCGGTGATTGCACCTGCATCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGCTGTCGCTCCGNGATCGCACTGTGCCGTCCA]
consensusID : consensus_5007#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[TTTTTTTTACACACGGATAAAGATAAACACGTTTTATTTGCAATTAAAGTATACTTGCGGTGATCTCCGTTCACGTTGAGATCAATATGATAAGAGAGCGGTCGATCCGCTGATCGATCGCTTTATAGATGCTTCTCGCAGGAAGCAGGATAGCGCATTCTTTCGTTGCCACGTGCCGAACGATAACGTGTCGGCCCGTGATTGGTCGAGCTGGTGCGTGGGAGAAACGCATTCTCCTAGACGTATGCGGGAGAAACGCATGCGAGAATTCGCATGCCGACGTGTCGGAGTCGACATCAGGATTACAATTCGATTTGACCGTTTATTGCGACAACCATCCTCCCCCCTTTGGGAAGAAGACTTCCTTCCCAAATATTTCACGCTATTAGGTGGTCGTGTTTGTGTCCTGACTTCAAAGAGCATTTCGTGTAAGACATGTTGAACGTTGAGGTTTTCTCGTTGCTTAAGAAAGTTTTCCCAAAACGTACCTGTGTTGCCTTAGCTCCC]
[+] EMBL AGA283470 [TTTTTTTTACACACGGATAAAGATAAACACGTTTTATTTGCAATTAAAGTATACTTGCGGTGATCTCCGTTCACGTTGAGATCAATATGATAAGAGAGCGGTCGATCCGCTGATCGATCGCTTTATAGATGCTTCTCGCAGGAAGCAGGATAGCGCATTCTTTCGTTGCCACGTGCCGAACGATAACGTGTCGGCCCGTGATTGGTCGAGCTGGTGCGTGGGAGAAACGCATTCTCCTAGACGTATGCGGGAGAAACGCATGCGAGAATTCGCATGCCGACGTGTCGGAGTCGACATCAGGATTACAATTCGATTTGACCGTTTATTGCGACAACCATCCTCCCCCCTTTGGGAAGAAGACTTCCTTCCCAAATATTTCACGCTATTAGGTGGTCGTGTTTGTGTCCTGACTTCAAAGAGCATTTCGTGTAAGACATGTTGAACGTTGAGGTTTTCTCGTTGCTTAAGAAAGTTTTCCCAAAACGTACCTGTGTTGCCTTAGCTCCC]
consensusID : consensus_5007#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[TGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCAACGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGTGGTGCTACGTTCCTGATTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCATTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGGCATCCAGCGTGGTGGCCTCTCGTCTATCGTGCGTGCGCCCTCCCCACGGGGGGAGCTAACGCAACACAGGTACGTTTTGGGAA]
[+] EMBL AGA284766 [TGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCAACGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGTGGTGCTACGTTCCTGATTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCATTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGGCATCCAGCGTGGTGGCCTCTCGTCTATCGTGCGTGCGCCCTCCCCACGGGGGGAGCTAACGCAACACAGGTACGTTTTGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5007#0 TGCTTCTCCCGACAACATGCTGCAGCAAAATGCCCTTGCGAGAAACGATGCCAAGTATGC 60
consensus_5007#1 ------------------------------------------------------------
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ------------------------------------------------------------
consensus_5007#0 TCCAAGAAACACCATACGATGCTGCATGTCGAAAGCAATGGGAGTGAGAAGTAACTATCA 120
consensus_5007#1 ------------------------------------------------------------
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ------------------------------------------------------------
consensus_5007#0 GGTTATCATCGCACCCCATTCACCATGCCCATTCGTTCCTGCTTCGTGTCGCTCCGTGAT 180
consensus_5007#1 -----------------------------------------------------------C 1
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ------------------------------------------------------------
consensus_5007#0 CGCATCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTATGTTCCTGCTTCGTGCC-GCT 239
consensus_5007#1 AGAATCCCCCGAGGT-----TTGTTC-TGAGCGGTGCTATGTTCCTGCTTNGTGCCTGCT 55
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ------------------TTTTTTTTACACACGGATAAAGATAAACACGTTTTATTTGCA 42
consensus_5007#0 CCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAG--CGGTGCTACGTTCCTGCTTC 297
consensus_5007#1 CCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAG--CGGTGCTACGTTCCTGCTTC 113
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ATTAAAGTATACTTGCGGTGATCTCCGTTCACGTTGAGATCAATATGATAAGAGAGCGGT 102
consensus_5007#0 GT-GTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTG 356
consensus_5007#1 GTAGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTG 173
consensus_5007#3 ---------------------------------TGACTGCACCGTGTGACCTCGCACCTG 27
consensus_5007#2 CGATCCGCTGATCGATCGCTTTAT---AGATGCTTCTCGCAGGAAGCAGGATAGCGCATT 159
* *** * * ** * *
consensus_5007#0 CTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTT--CCTGCT-----TCGTGTCGCTCC 409
consensus_5007#1 CTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTT--CCTGCT-----TCGTGTCGCTCC 226
consensus_5007#3 CTCCGGTCCTCAACGTTCCTGAGCGGTGCTACGTT--CCTGCT-----TCGTGCCGCTCC 80
consensus_5007#2 CTTTCGTTGCCA-CGTGCC-GAACGATAACGTGTCGGCCCGTGATTGGTCGAGCTGGTGC 217
** ** ** *** ** ** ** * ** ** * *** * * * *
consensus_5007#0 GTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGC-TTCGTG 468
consensus_5007#1 GTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGC-TTCGTG 285
consensus_5007#3 GTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGTGGTGCTACGTTCCTGA-TTCGTG 139
consensus_5007#2 GTGGGAGAAACGCATTC--TCCTAGACGTATGCGGGAGAAAC-GCATGCGAGAATTCGCA 274
*** * * * * * **** *** * * * * * * * * ****
consensus_5007#0 TCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACC--TCG-CACCTGC 525
consensus_5007#1 TCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGNACCGTGTGACC--TCGGCACCTGC 343
consensus_5007#3 TCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACC--TCG-CACCTGC 196
consensus_5007#2 TGCCGACGTG-TCGGAGTCGACATCAGGATTACAATTCGATTTGACCGTTTATTGCGACA 333
* * **** *** * * * * ** * * ***** * *
consensus_5007#0 TCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCC----TGCTTCGTGCCGCTCCGTGA 581
consensus_5007#1 TCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCC----TGCTTCGTGCCGCTCCGTGA 399
consensus_5007#3 TCCGGTCCTCATCATTCCTGAGCGGTGCTACGTTCC----TGCTTCGTGTCGCTCCGTGA 252
consensus_5007#2 ACCATCCTCCCCCCTTTGGGAAGAAGACTTCCTTCCCAAATATTTCACGCTATTAGGTGG 393
** * * * ** ** ** * **** * *** * * ***
consensus_5007#0 TTGCACCTGC-TCCAGTCCTCATCGTTC-CTGAGCG-GTGCTACGTTCCTGCTTCGTGTC 638
consensus_5007#1 TTGCACCTGC-TCCAGTCCTCATCGTTC-CTGAGCG-GTGCTACGTTCCTGCTTCGTGTC 456
consensus_5007#3 TCGCAC-----TGTGGCATCCAGCGT------GGTG-GCCTCTCGTCTATCGTGCGTG-C 299
consensus_5007#2 TCGTGTTTGTGTCCTGACTTCAAAGAGCATTTCGTGTAAGACATGTTGAACGTTGAGGTT 453
* * * * ** * * * ** * *
consensus_5007#0 GCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGCGACCTCGCACCTGCTCCGG 698
consensus_5007#1 GCTCCGTGATCGCACTGTGCCGTCCAGTGACTG-ACCGTGCGAC-TCGCACCTGGTCCGG 514
consensus_5007#3 GCCCTCCCCACGGGGGGAGCTAACGCAACACAG----GTACGTTTTGGGAA--------- 346
consensus_5007#2 TTCTCGTTGCTTAAGAAAGTTTTCCCAAAACGTACCTGTGTTGCCTTAGCTCCC------ 507
* * ** ** *
consensus_5007#0 TCCTCATCTTTCCTGAGCGGNGC-TATGTTCCTGCTTCGTGCCGCTCCG-TGATTGCACC 756
consensus_5007#1 TCCTCATCGTTCCTGAGCGGTGCCTATGTTCCTGCTTCGTGCCGCTCCGGTGATTGCACC 574
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ------------------------------------------------------------
consensus_5007#0 TGCT-------------------------------------------------------- 760
consensus_5007#1 TGCATCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGCTGTCGCTCCGNG 634
consensus_5007#3 ------------------------------------------------------------
consensus_5007#2 ------------------------------------------------------------
consensus_5007#0 ------------------
consensus_5007#1 ATCGCACTGTGCCGTCCA 652
consensus_5007#3 ------------------
consensus_5007#2 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||