cluster # 5015

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Anopheles gambiae
cluster # 5015 cluster # 5015 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5015#0 length = 711 sequences # 3

consensus_5015#1 length = 187 sequences # 1

consensusID : consensus_5015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 711
fasta sequence

                              [AAGGGGAAGCGCAGGGCAGAGGAACGGCCGGGAAAACAAAAAGAACGGGGGGCCGAACGAAAAACAACAAGCCAAACACGCGACAAAGGCCCAACGAAAAACAAGGCAACACGAGAACAGACAACAGGAAAACGAACGCAAAAACGACAGAGACAGAACCCAAAAAAAAACGAGCCCAAAAAAACAAAGCAGCAGCCACAAGCACCGACCACGCCCGACGACGAGGCAGCGACAAGGGAAGACAAAACAAACCACAAAAGGGAAGAAGAAGAAGAAGACCCAGACCCGGAAAAAGGAGGAGAAGAACAAGGCCAACAGCCCCACCAACACCAACAACGACGGCAACGCCAACACCACAAAGGCAGACCAGAAGGCAGCAAAGAAGGCAAACGGGACCAAGAAGGCAAAGAAAAAGACCGCAACCACCAAGGCCAAACAACCGGCACCCAAAACGGCCAAAGCAGCGCACCAAAACAACAAACACGACCCGAGAACAGAGCCACACAAAACCAAAAAACCGGCCACAAGAAACAAGCCAAAGGCCGCACAACAGAAGAACAAGGCAGCGACCCCCGGGAACCACCCGCCGGACCCAAACAGGACGAAAAAGCAGCCGGAGCAACAAACGAACACAAACCACACGGCGGAACAAGCGGCACAACACGCCAAGACCAACACAACAAAGGCGACAAACCAGGAACCAGCCCAAAC]

[+] EMBL CNS08EFN             [AAGGGGAAGCGCAGGGCAGAGGAACGGCCGGGAAAACAAAAAGAACGGGGGGCCGAACGAAAAACAACAAGCCAAACACGCGACAAAGGCCCAACGAAAAACAAGGCAACACGAGAACAGACAACAGGAAAACGAACGCAAAAACGACAGAGACAGAACCCAAAAAAAAACGAGCCCAAAAAAACAAAGCAGCAGCCACAAGCACCGACCACGCCCGACGACGAGGCAGCGACAAGGGAAGACAAAACAAACCACAAAAGGGAAGAAGAAGAAGAAGACCCAGACCCGGAAAAAGGAGGAGAAGAACAAGGCCAACAGCCCCACCAACACCAACAACGACGGCAACGCCAACACCACAAAGGCAGACCAGAAGGCAGCAAAGAAGGCAAACGGGACCAAGAAGGCAAAGAAAAAGACCGCAACCACCAAGGCCAAACAACCGGCACCCAAAACGGCCAAAGCAGCGCACCAAAACAACAAACACGACCCGAGAACAGAGCCACACAAAACCAAAAAACCGGCCACAAGAAACAAGCCAAAGGCCGCACAACAGAAGAACAAGGCAGCGACCCCCGGGAACCACCCGCCGGACCCAAACAGGACGAAAAAGCAGCCGGAGCAACAAACGAACACAAACCACACGGCGGAACAAGCGGCACAACACGCCAAGACCAACACAACAAAGGCGACAAACCAGGAACCAGCCCAAAC]
[+] EMBL CNS08HVT             [                                                                                                                                                                                           AGCAGCAGCCACAAGCACCGACCACGCCCGACGACGAGGCAGCGACAAGGGAAGACAAAACAAACCACAAAAGGGAAGAAGAAGAAGAAGACCCAGACCCGGAAAAAGGAGGAGAAGAACAAGGCCAACAG                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS09RU1             [                                                                                                                                                                                                                                                                       AGAAGAAGAAGAAGACCCAGACCCAGAAAAAGGAGGAGAAGAACAAGGCCAACAGCCCCACCAACACCCACAACGGCGGCAACGCCAACACCACAAAGGCAGACCAGAAGGCGGCAAAGAAGGCAAACGGGACCAAGAAGGCAAAGAAAAAGACCGCCACCACCAAGGCCAAACAACCGGCACCCAAAACGGCCAAAGCAGCGCACCAAAACCACAAACACGACCCGGGAACGGAGCCCCACAAAACCAACAAACCGGCCACCAGAAACAAGCCCTAGGCCACACAACAGAAGAACAAGGCGGCGACCCCGGGGAACCACCCCCCGGACCCAAACCAGACGGAAAAGCAGCCCGAGCAACca                                                                                      ]




>consensus_5015#0
AAGGGGAAGCGCAGGGCAGAGGAACGGCCGGGAAAACAAAAAGAACGGGGGGCCGAACGA
AAAACAACAAGCCAAACACGCGACAAAGGCCCAACGAAAAACAAGGCAACACGAGAACAG
ACAACAGGAAAACGAACGCAAAAACGACAGAGACAGAACCCAAAAAAAAACGAGCCCAAA
AAAACAAAGCAGCAGCCACAAGCACCGACCACGCCCGACGACGAGGCAGCGACAAGGGAA
GACAAAACAAACCACAAAAGGGAAGAAGAAGAAGAAGACCCAGACCCGGAAAAAGGAGGA
GAAGAACAAGGCCAACAGCCCCACCAACACCAACAACGACGGCAACGCCAACACCACAAA
GGCAGACCAGAAGGCAGCAAAGAAGGCAAACGGGACCAAGAAGGCAAAGAAAAAGACCGC
AACCACCAAGGCCAAACAACCGGCACCCAAAACGGCCAAAGCAGCGCACCAAAACAACAA
ACACGACCCGAGAACAGAGCCACACAAAACCAAAAAACCGGCCACAAGAAACAAGCCAAA
GGCCGCACAACAGAAGAACAAGGCAGCGACCCCCGGGAACCACCCGCCGGACCCAAACAG
GACGAAAAAGCAGCCGGAGCAACAAACGAACACAAACCACACGGCGGAACAAGCGGCACA
ACACGCCAAGACCAACACAACAAAGGCGACAAACCAGGAACCAGCCCAAAC

consensusID : consensus_5015#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [ATAAACCGGCCCACAAGAAACAAGCCTTAGGCCACACAACGGAAGAACAAGGCGGCGACCCCGGGGAACCACACAACAGACACAAACAAGACGAAAAAGCAGCCAGAGCAACAAACGAACACAAACCACACAGCGGAACAAGCGGCACAACACGCCTGGACCAACTCCCCAAGGGCGCCTCCCCAGG]

[+] EMBL CNS09JGH             [ATAAACCGGCCCACAAGAAACAAGCCTTAGGCCACACAACGGAAGAACAAGGCGGCGACCCCGGGGAACCACACAACAGACACAAACAAGACGAAAAAGCAGCCAGAGCAACAAACGAACACAAACCACACAGCGGAACAAGCGGCACAACACGCCTGGACCAACTCCCCAAGGGCGCCTCCCCAGG]




>consensus_5015#1
ATAAACCGGCCCACAAGAAACAAGCCTTAGGCCACACAACGGAAGAACAAGGCGGCGACC
CCGGGGAACCACACAACAGACACAAACAAGACGAAAAAGCAGCCAGAGCAACAAACGAAC
ACAAACCACACAGCGGAACAAGCGGCACAACACGCCTGGACCAACTCCCCAAGGGCGCCT
CCCCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5015#0      AAGGGGAAGCGCAGGGCAGAGGAACGGCCGGGAAAACAAAAAGAACGGGGGGCCGAACGA 60
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      AAAACAACAAGCCAAACACGCGACAAAGGCCCAACGAAAAACAAGGCAACACGAGAACAG 120
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      ACAACAGGAAAACGAACGCAAAAACGACAGAGACAGAACCCAAAAAAAAACGAGCCCAAA 180
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      AAAACAAAGCAGCAGCCACAAGCACCGACCACGCCCGACGACGAGGCAGCGACAAGGGAA 240
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      GACAAAACAAACCACAAAAGGGAAGAAGAAGAAGAAGACCCAGACCCGGAAAAAGGAGGA 300
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      GAAGAACAAGGCCAACAGCCCCACCAACACCAACAACGACGGCAACGCCAACACCACAAA 360
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      GGCAGACCAGAAGGCAGCAAAGAAGGCAAACGGGACCAAGAAGGCAAAGAAAAAGACCGC 420
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      AACCACCAAGGCCAAACAACCGGCACCCAAAACGGCCAAAGCAGCGCACCAAAACAACAA 480
consensus_5015#1      ------------------------------------------------------------
                                                                                  

consensus_5015#0      ACACGACCCGAGAACAGAGCCACACAAAACCAAAAAACCGGCC-ACAAGAAACAAGCCAA 539
consensus_5015#1      --------------------------------ATAAACCGGCCCACAAGAAACAAGCCTT 28
                                                      * ********* **************  

consensus_5015#0      AGGCCGCACAACAGAAGAACAAGGCAGCGACCCCCGGGAACCACCCGCCGGACCCAAACA 599
consensus_5015#1      AGGCCACACAACGGAAGAACAAGGCGGCGACCCCGGGGAACCACACAACAGACACAAACA 88
                      ***** ****** ************ ******** ********* *  * *** ******

consensus_5015#0      GGACGAAAAAGCAGCCGGAGCAACAAACGAACACAAACCACACGGCGGAACAAGCGGCAC 659
consensus_5015#1      AGACGAAAAAGCAGCCAGAGCAACAAACGAACACAAACCACACAGCGGAACAAGCGGCAC 148
                       *************** ************************** ****************

consensus_5015#0      AACACGCCAAGACCAACACAACAAAGGCGACAAACCAGGAACCAGCCCAAAC 711
consensus_5015#1      AACACGCCTGGACCAACTCCCCAAGGGCGCCTCCCCAGG------------- 187
                      ********  ******* *  *** **** *   *****