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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1397 fasta sequence
[GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA]
[+] EMBL AL931390 [GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA]
consensusID : consensus_5016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence
[CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTGTGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCAGGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGCCACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAA-GGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG]
[+] EMBL AGA285747 [CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTGTGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCAGGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGCCACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTG ]
[-] EMBL AGA283685 [ ACGGGCTCCAACTCACCGCGTGAGACGTGAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAA GGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG]
[-] EMBL AGA284440 [ GATCGTCACTTTTGGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAAGGGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCTTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5016#0 ------------------------------------GCAGAATCCCCGAGGTTATTCGAA 24
consensus_5016#1 CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAA 60
*** * * ** * *****
consensus_5016#0 AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT 84
consensus_5016#1 AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT 120
************************************************************
consensus_5016#0 ACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTT 144
consensus_5016#1 ACTACACAAACATTGGTGAAT-TGTGATTTATTTCCATT-GAAGTGCAACAAATTC-GTT 177
********************* ***************** **************** ***
consensus_5016#0 CTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGT 204
consensus_5016#1 CTGTGTTAA---GTTTTCCGG--GAACAAAGTGCCAAAAA---AGGGACC-AAAACCGGC 228
********* *** **** ***************** * **** ****** *
consensus_5016#0 GTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTG 264
consensus_5016#1 --CAACCACATCCAGGAAGCAAACGGC-----GTGAAA-GCAAAGG--CTGTTCGCG--- 275
************** * * * * ****** ******* **** *
consensus_5016#0 TTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTG 324
consensus_5016#1 -TTTTGACA-GTTCAC-AGCTCTCTCGCCACGG--GCTCCAACTCACCGCGTGAGACGT- 329
******** ****** ************** * ************************
consensus_5016#0 TAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATC 384
consensus_5016#1 TAGTGGCTTGGGGG-GCTTACTCACCACTCACTCACCACTCAGCGAGCCGT-CGC-GATC 386
************* ************************************ *** ****
consensus_5016#0 GTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGT 444
consensus_5016#1 GTCACTTTT-CGCGTATGTTTT-GTTGATTT---GGGGGTCAGAAAAAACGGACAGAAGT 441
********* ************ ******* ** ***********************
consensus_5016#0 TCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCT 504
consensus_5016#1 TCCAAAA-GGAAAAGGCG---GAC-GCATCCCCGT-CAGTCC-GTGTGATCATTTTCC-- 492
******* ****** * * *** ********** ****** ************* *
consensus_5016#0 GTGCCCGTGAATTCAACTACAG-GTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGAC 563
consensus_5016#1 GTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCG--CTTGGAGCAG-GGAC 549
********************** ******************* ********* ****
consensus_5016#0 TCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTA 623
consensus_5016#1 TCCCC-TCGTCG---TTGT---TTGGTT--TACTT-CTTTCCCTT-----TTCTTTCTTT 594
***** *** **** *** * ***** ** * **** * * **
consensus_5016#0 CGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGC 683
consensus_5016#1 CGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGT-CACGCTGAA-AAAGTTA-GTGC 651
*** *** ** ************************ ********* ******* ****
consensus_5016#0 AAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAA 743
consensus_5016#1 AAACCCG--TCTTAAGATGATCCGTGATCCTGG-CGGT-ACAAGCCCGAA-CGAG---AA 703
******* ********************* **** *********** ** **
consensus_5016#0 TCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNG 803
consensus_5016#1 TCAAGATTCTCC-----CCCTTCGCCCAAG-TATGAT-CG-------------------- 736
******* * * *** ***** ****** **
consensus_5016#0 CCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCC 863
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 ACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAA 923
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 NTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATG 983
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 ANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGT 1043
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 TTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAA 1103
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 TTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATAC 1163
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 ANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCA 1223
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 ACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACA 1283
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 NCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAA 1343
consensus_5016#1 ------------------------------------------------------------
consensus_5016#0 GACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA 1397
consensus_5016#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||