cluster # 5024

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Anopheles gambiae
cluster # 5024 cluster # 5024 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5024#0 length = 960 sequences # 3

consensus_5024#1 length = 657 sequences # 1

consensusID : consensus_5024#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 960
fasta sequence

                              [CGAAGCGATCGAGACGGACATCTTCGCGTACGAGGAGCGGGTGCAGGCGGTGGTGGCCGTGTGCAACGAGCTGGAGGCGGAGAAGTACCACGACATCGAGCGCATCGCCGCCCGCAAGGACAATGTGCTGCGCCTGTGGAACTATCTGATCGAGCTGCTGCGGGCGCGCCGCATGCGCCTCGAGTTCTCGATCCAGCTGCAGCAGAACTTCCAGGAGATGATCTACATCCTCGACTCGATGGAGGAGATCAAGCAGCGGCTGCTGACGGACGACTACGGCAAGCATCTGATGGGCGTGGAGGATCTGCTCCAGAAGCATTCGCTCGTCGAGGCGGACATCAACGTGCTGGGCGATCGGGTCAAGCAGGTGGTGCAGAACTCGCAAAAGTTCCTGGTGGACGAGGAGGACAACTACAAACCGTGCGACCCGTCGATCATCGTCGA-CCGCGTCCAGCGCCTGGAGGACGCGTACGCCGAGCTGTGCAAGCTGGCGGTCGAGCGTCGCTCGCGGCTGGAGGAGAACCGCAAGCTGTGGCAGTTCTACTGGGACATGGCGGACGAGGAGAACTGGATCAAGGAGAAGGAGCAGATCGTGTCGGCGGACGAGATTGGGCACGATCTGACGACGGTGAACTTGCTGCTGTCCAAGCACAAGGCGCTCGAGTCGGAGATTCAGTCGCACGAGCCGCAGCTGATGGCGGTTAGCGAGGTGGGCGATGAGCTGGTGCGCCGCGGTCACTTCGGGGCGGACCGCATCGACGAGCGGCTGAAGGAGATACTGGCGATGTGGAGCAATCTGCGCGAGCTGACGGAGTACCGGCGCAAGCGGCTGGAGGATGCCGTCGACTACTTCCAGCTGTTTGCCGACGCGGACGACATTGACAATTGGATGTTGGACGCGTTGCGGCTGGTGTCGTCCGAAGATGTCGGTCGGGACGANGCGAACGTGCAGAGCCTGCT]

[+] EMBL AGA284141            [CGAAGCGATCGAGACGGACATCTTCGCGTACGAGGAGCGGGTGCAGGCGGTGGTGGCCGTGTGCAACGAGCTGGAGGCGGAGAAGTACCACGACATCGAGCGCATCGCCGCCCGCAAGGACAATGTGCTGCGCCTGTGGAACTATCTGATCGAGCTGCTGCGGGCGCGCCGCATGCGCCTCGAGTTCTCGATCCAGCTGCAGCAGAACTTCCAGGAGATGATCTACATCCTCGACTCGATGGAGGAGATCAAGCAGCGGCTGCTGACGGACGACTACGGCAAGCATCTGATGGGCGTGGAGGATCTGCTCCAGAAGCATTCGCTCGTCGAGGCGGACATCAACGTGCTGGGCGATCGGGTCAAGCAGGTGGTGCAGAACTCGCAAAAGTTCCTGGTGGACGAGGAGGACAACTACAAACCGTGCGACCCGTCGATCATCGTCGACCCGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AGA285437            [                                                                                                                                              TATCTAATCGAGCTGCTGCGGGCGCGCCGCATGCGCCTCGAGTTCTCAATCCAGCTGCAGCAGAACTTCCAGGAGATGATCTACATCCTCGACTCGATGGAGGAGATCAAGCAGCGGCTGCTGACGGACGACTACGGCAAGCATCTGATGGGCGTGGAGGATCTGCTCCAGAAGCATTCGCTCGTCGAGGCGGACATCAACGTGCTGGGCGATCGGGTCAAGCAGGTGGTGCAGAACTCGCAAAAGTTCCTGGTGGACGAGGAGGACAACTACAAACCGTGCGACCCGTCGATCATCGTCGA CCGCGTCCAGCGCCTGGAGGACGCGTACGCCGAGCTGTGCAAGCTGGCGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX625763             [                                                                                                                                                                                                                                                                                              CTGATGGGCGTGGAGGATCTGCTCCAGAAGCATTCGCTCGTCGAGGCGGACATCAACGTGCTGGGCGATCGGGTCAAGCAGGTGGTGCAGAACTCGCAAAAGTTCCTGGTGGACGAGGAGGACAACTACAAACCGTGCGACCCGTCGATCATCGTCGA CCGCGTCCAGCGCCTGGAGGACGCGTACGCCGAGCTGTGCAAGCTGGCGGTCGAGCGTCGCTCGCGGCTGGAGGAGAACCGCAAGCTGTGGCAGTTCTACTGGGACATGGCGGACGAGGAGAACTGGATCAAGGAGAAGGAGCAGATCGTGTCGGCGGACGAGATTGGGCACGATCTGACGACGGTGAACTTGCTGCTGTCCAAGCACAAGGCGCTCGAGTCGGAGATTCAGTCGCACGAGCCGCAGCTGATGGCGGTTAGCGAGGTGGGCGATGAGCTGGTGCGCCGCGGTCACTTCGGGGCGGACCGCATCGACGAGCGGCTGAAGGAGATACTGGCGATGTGGAGCAATCTGCGCGAGCTGACGGAGTACCGGCGCAAGCGGCTGGAGGATGCCGTCGACTACTTCCAGCTGTTTGCCGACGCGGACGACATTGACAATTGGATGTTGGACGCGTTGCGGCTGGTGTCGTCCGAAGATGTCGGTCGGGACGANGCGAACGTGCAGAGCCTGCT]




>consensus_5024#0
CGAAGCGATCGAGACGGACATCTTCGCGTACGAGGAGCGGGTGCAGGCGGTGGTGGCCGT
GTGCAACGAGCTGGAGGCGGAGAAGTACCACGACATCGAGCGCATCGCCGCCCGCAAGGA
CAATGTGCTGCGCCTGTGGAACTATCTGATCGAGCTGCTGCGGGCGCGCCGCATGCGCCT
CGAGTTCTCGATCCAGCTGCAGCAGAACTTCCAGGAGATGATCTACATCCTCGACTCGAT
GGAGGAGATCAAGCAGCGGCTGCTGACGGACGACTACGGCAAGCATCTGATGGGCGTGGA
GGATCTGCTCCAGAAGCATTCGCTCGTCGAGGCGGACATCAACGTGCTGGGCGATCGGGT
CAAGCAGGTGGTGCAGAACTCGCAAAAGTTCCTGGTGGACGAGGAGGACAACTACAAACC
GTGCGACCCGTCGATCATCGTCGACCGCGTCCAGCGCCTGGAGGACGCGTACGCCGAGCT
GTGCAAGCTGGCGGTCGAGCGTCGCTCGCGGCTGGAGGAGAACCGCAAGCTGTGGCAGTT
CTACTGGGACATGGCGGACGAGGAGAACTGGATCAAGGAGAAGGAGCAGATCGTGTCGGC
GGACGAGATTGGGCACGATCTGACGACGGTGAACTTGCTGCTGTCCAAGCACAAGGCGCT
CGAGTCGGAGATTCAGTCGCACGAGCCGCAGCTGATGGCGGTTAGCGAGGTGGGCGATGA
GCTGGTGCGCCGCGGTCACTTCGGGGCGGACCGCATCGACGAGCGGCTGAAGGAGATACT
GGCGATGTGGAGCAATCTGCGCGAGCTGACGGAGTACCGGCGCAAGCGGCTGGAGGATGC
CGTCGACTACTTCCAGCTGTTTGCCGACGCGGACGACATTGACAATTGGATGTTGGACGC
GTTGCGGCTGGTGTCGTCCGAAGATGTCGGTCGGGACGANGCGAACGTGCAGAGCCTGCT

consensusID : consensus_5024#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGCCCACGCGTCCGTGACAATTGGATGTTGGACGCGCTGCGGCTGGTGTCGTCCGAGGATGTCGGTCGGGACGAGGCGAACGTGCAGAGCCTGCTGAAGAAGCACAAGGACGTGGCGGACGAGCTGAAGAACTACGCCGAAACGATCGAGCAGCTGCACGCGCAGGCCAAGCGGCTGACGCTGAACGAGCCGGAACAGGAGAGGGTGAACGAGCGGCTGGCAGCGATCGACAACCGCTACCGCGAGCTGATGGAGCTGGCGAAGCTGCGCAAGCAGCGCCTGCTGGACGCGCTCAGCCTGTACAAGCTCATCTCCGAGAGCGACGGCGTGGAGCAGTGGATCGGCGAGAAGGAGCGCATGCTGCAGACGATGGTCCCGGGCAAGGACATCGAGGACGTCGAGATCATGAAGCATCGCTACGACGGGTTCGACAAGGAGATGAACGCAAATGCGTCGCGCGTCGCCGTCGTGAACCAGCTCGCCCGCCAGCTGCTGCACGTGGAGCATCCGAACTCGCCCGAAATCATCGAACGCCAGAACCATCTGAACAACTCGTGGTCGAAGCTGCGCGAGCAGGCCGAAAGCAAGCGGGACGATCTGAAGTCGGCCCACGGTTGTGCAGACGTTCTACATCGAGTGCCCGCGAGACGGTCTCG]

[+] EMBL BM637971             [CCGCCCACGCGTCCGTGACAATTGGATGTTGGACGCGCTGCGGCTGGTGTCGTCCGAGGATGTCGGTCGGGACGAGGCGAACGTGCAGAGCCTGCTGAAGAAGCACAAGGACGTGGCGGACGAGCTGAAGAACTACGCCGAAACGATCGAGCAGCTGCACGCGCAGGCCAAGCGGCTGACGCTGAACGAGCCGGAACAGGAGAGGGTGAACGAGCGGCTGGCAGCGATCGACAACCGCTACCGCGAGCTGATGGAGCTGGCGAAGCTGCGCAAGCAGCGCCTGCTGGACGCGCTCAGCCTGTACAAGCTCATCTCCGAGAGCGACGGCGTGGAGCAGTGGATCGGCGAGAAGGAGCGCATGCTGCAGACGATGGTCCCGGGCAAGGACATCGAGGACGTCGAGATCATGAAGCATCGCTACGACGGGTTCGACAAGGAGATGAACGCAAATGCGTCGCGCGTCGCCGTCGTGAACCAGCTCGCCCGCCAGCTGCTGCACGTGGAGCATCCGAACTCGCCCGAAATCATCGAACGCCAGAACCATCTGAACAACTCGTGGTCGAAGCTGCGCGAGCAGGCCGAAAGCAAGCGGGACGATCTGAAGTCGGCCCACGGTTGTGCAGACGTTCTACATCGAGTGCCCGCGAGACGGTCTCG]




>consensus_5024#1
CCGCCCACGCGTCCGTGACAATTGGATGTTGGACGCGCTGCGGCTGGTGTCGTCCGAGGA
TGTCGGTCGGGACGAGGCGAACGTGCAGAGCCTGCTGAAGAAGCACAAGGACGTGGCGGA
CGAGCTGAAGAACTACGCCGAAACGATCGAGCAGCTGCACGCGCAGGCCAAGCGGCTGAC
GCTGAACGAGCCGGAACAGGAGAGGGTGAACGAGCGGCTGGCAGCGATCGACAACCGCTA
CCGCGAGCTGATGGAGCTGGCGAAGCTGCGCAAGCAGCGCCTGCTGGACGCGCTCAGCCT
GTACAAGCTCATCTCCGAGAGCGACGGCGTGGAGCAGTGGATCGGCGAGAAGGAGCGCAT
GCTGCAGACGATGGTCCCGGGCAAGGACATCGAGGACGTCGAGATCATGAAGCATCGCTA
CGACGGGTTCGACAAGGAGATGAACGCAAATGCGTCGCGCGTCGCCGTCGTGAACCAGCT
CGCCCGCCAGCTGCTGCACGTGGAGCATCCGAACTCGCCCGAAATCATCGAACGCCAGAA
CCATCTGAACAACTCGTGGTCGAAGCTGCGCGAGCAGGCCGAAAGCAAGCGGGACGATCT
GAAGTCGGCCCACGGTTGTGCAGACGTTCTACATCGAGTGCCCGCGAGACGGTCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5024#0      CGAAGCGATCGAGACGGACATCTTCGCGTACGAGGAGCGGGTGCAGGCGGTGGTGGCCGT 60
consensus_5024#1      ------------------------------------------------------------
                                                                                  

consensus_5024#0      GTGCAACGAGCTGGAGGCGGAGAAGTACCACGACATCGAGCGCATCGCCGCCCGCAAGGA 120
consensus_5024#1      ------------------------------------------------------------
                                                                                  

consensus_5024#0      CAATGTGCTGCGCCTGTGGAACTATCTGATCGAGCTGCTGCGGGCGCGCCGCATGCGCCT 180
consensus_5024#1      ------------------------------------------------------------
                                                                                  

consensus_5024#0      CGAGTTCTCGATCCAGCTGCAGCAGAACTTCCAGGAGATGATCTACATCCTCGACTCGAT 240
consensus_5024#1      --------------------------CCGCCCACGCG----TCCGTGAC---AATTGGAT 27
                                                 *  *** * *    **     *    * * ***

consensus_5024#0      GGAGGAGATCAAGCAGCGGCTGCTGACGGACGACTACGGCAAGCATCTGATGGGCGTGGA 300
consensus_5024#1      GTTGGACGCGCTGCGGCTGGTGTCGTCCGAGGATGTCGGTCGGGACGAGGCGAACGTGCA 87
                      *  ***      ** ** * **  * * ** **   ***   * *   *  *  **** *

consensus_5024#0      GGATCTGCTCCAGAAGCATTCGCTCGTCGAGGCGGACATCAACGTGCTGGGCGATCGGGT 360
consensus_5024#1      GAGCCTGCTGAAGAAGCACAAGGACGTGGCGGACGAGCTGAAGAACTACGCCGAAACGAT 147
                      *   *****  *******   *  *** * **  **  * **       * ***   * *

consensus_5024#0      CAAGCAGGTG-GTGCAGAACTCGCAAAAGTTCCTGGTGGACGAGGAGGACAACTACAAAC 419
consensus_5024#1      CGAGCAGCTGCACGCGCAGGCCA-AGCGGCTGACGCTGAACGAGCCGGAACAGGAGAGGG 206
                      * ***** **   **  *   *  *   * *   * ** *****  ***  *  * *   

consensus_5024#0      CGTGCGACCCGTCGATCATCGTCGACCGCGTCCAGCGCCTGGAGGACGCGTACGCCGAGC 479
consensus_5024#1      TGAACGAGCGGCTGGCAGCGATCGACAACCGCTACCGCGAGCTGATGGAGCTGGCGAAGC 266
                       *  *** * *  *       *****  *  * * ***  *  *   * *   **  ***

consensus_5024#0      TGTGCAAGCTGGCGGTCGAGCGTCGCTCGCGGCTGGAGGAGAACCGCAAGCTGTGGCAGT 539
consensus_5024#1      TGCGCAAGC---------AGCGCCT------GCTGGACGCG---CTCAGCCTGTACAAGC 308
                      ** ******         **** *       ****** * *   * **  ****   ** 

consensus_5024#0      TCTACTGGGACATGGCGGACGAGGAGAACTGGATCAAGGAGAAGGAGCAGATCGTGTCGG 599
consensus_5024#1      TCATCTCCGAGAGCGACGGCGTGGAGCAGTGGATCGGCGAGAAGGAGCGCATGCTGCAGA 368
                      **  **  ** *  *  * ** **** * ******   **********  **  **  * 

consensus_5024#0      CGGACGAGATTGGGCACGATC--TGACGACGGTGAACTTGCTGCTGTCCAAGCACAAGGC 657
consensus_5024#1      CG-ATGGTCCCGGGCAAGGACATCGAGGACGTCGAGATCA-TGAAGCATCGCTACGACGG 426
                      ** * *     ***** *  *   ** ****  **  *   **  *       ** * * 

consensus_5024#0      GCTCGAGTCGGAGATTCAGTCGCACGAGCCGCAGCTGATGGCGGTTAGCGAGGTGGGCGA 717
consensus_5024#1      GTTCGACAAGGAGATGAACGCAAATGCGTCGCGCGTCGCCGTCGTGAACCAGCTCGCCCG 486
                      * ****   ******  *  *  * * * ***   *    *  ** * * ** * * *  

consensus_5024#0      TGAGCTGGTGCGCCGCGGTCACTTCGGGGCGGACCGCATCGACGAGCGGCTGAAGGAGAT 777
consensus_5024#1      CCAGCTGCTGCACGTGGAGCATCCGAACTCGCCCGAAATCATCGAACGCCAGAACCATCT 546
                        ***** *** *   *  **        **  *   ***  *** ** * ***  *  *

consensus_5024#0      ACTGGCGATGTGGAGCAATCTGCGCGAGCTGACGGAGTACCGGCGCAAGCGGCTGGAGGA 837
consensus_5024#1      GAACAACTCGTGGTCGAAGCTGCGCGAGCAGGCCGAAAGCAAGCGGGACGATCTGAAGTC 606
                               ****   ** ********** * * **   *  ***  *    *** **  

consensus_5024#0      TGCCGTCGACTACTTCCAGCTGTTTGCCGACGCGGACGACATTGACAATTGGATGTTGGA 897
consensus_5024#1      GGCCCACGGTTG--TGCAGACGTTCTACATCGAGTGCCCGCGAGACGGTCTCG------- 657
                       ***  **  *   * ***  ***   *  ** *  *      ***  *           

consensus_5024#0      CGCGTTGCGGCTGGTGTCGTCCGAAGATGTCGGTCGGGACGANGCGAACGTGCAGAGCCT 957
consensus_5024#1      ------------------------------------------------------------
                                                                                  

consensus_5024#0      GCT 960
consensus_5024#1      ---