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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence
[TAACTGGCTGCTCGTGTGGTTTGTGAAAAAGAAAATTCTAGGAAACCCGGAAATAAGTGGTTTTAAATTTGTGACTACCAGTTTGCTGTAAGTTTTAAATCTGTGAACAATAATGACTGACGCCGAGAAGACCGCACCAGAAACCACCGCCGAAACAAAGGAAACGACCAAAGCGGAAAACGATGGAACTGAAGGCGATGTGCAAAAGGACAACGAACACCAACGTACGATCAATGTTGGTAACTTGCCGAAAGATATTACGGAGCAGCAGCTGCGTGATCACTTCGCGGGGCATGAGGTAGAGCGCGTTGAGATTTATCACTATCTCCGCAACACGCTTGCCCTGCTGGTGTTCAAGGAGAAAGCGGCCGCTCAGAAGGCTTGTGAGGAGAAGGATGGTTCGATGCTGAATGATCGTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGATTGTGGCCGTCTTGGACGATGACATGACCGAGGAGAAGCTGTACGATCGCGTCAAGGAGCACTGCGAGGTCACGCAGGTGTTCATCTTCCATCCGCTCGGCTACGTGCACCTTGGCAAGGATGTCGATAAGGCAGCGGTGCTGGAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCGCGATCAGAACCAGCACGTCGACCTGTGGCGTGCGGCCAAGCTGTTCTTCCGCAACCGCAACCGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGGAAGAGCTGAAGAAGGCTTGCTCCGAGGCGGGCACCATTACCGAAGCCATCGCTAAC]
[+] EMBL BX602931 [TAACTGGCTGCTCGTGTGGTTTGTGAAAAAGAAAATTCTAGGAAACCCGGAAATAAGTGGTTTTAAATTTGTGACTACCAGTTTGCTGTAAGTTTTAAATCTGTGAACAATAATGACTGACGCCGAGAAGACCGCACCAGAAACCACCGCCGAAACAAAGGAAACGACCAAAGCGGAAAACGATGGAACTGAAGGCGATGTGCAAAAGGACAACGAACACCAACGTACGATCAATGTTGGTAACTTGCCGAAAGATATTACGGAGCAGCAGCTGCGTGATCACTTCGCGGGGCATGAGGTAGAGCGCGTTGAGATTTATCACTATCTCCGCAACACGCTTGCCCTGCTGGTGTTCAAGGAGAAAGCGGCCGCTCAGAAGGCTTGTGAGGAGAAGGATGGTTCGATGCTGAATGATCGTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGATTGTGGCCGTCTTGGACGATGACATGACCGAGGAGAAGCTGTACGATCGCGTCAAGGAGCACTGCGAG ]
[+] EMBL AGA284146 [ TTGTGAGGAGAAGGATGGTTCGATGCTGAATGATCGTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGATTGTGGCCGTCTTGGACGATGACATGACCGAGGAGAAGCTGTACGATCGCGTCAAGGAGCACTGCGAGGTCACGCAGGTGTTCATCTTCCATCCGCTCGGCTACGTGCACCTTGGCAAGGATGTCGATAAGGCAGCGGTGCTGGAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCGCGATCAGAACCAGCACGTCGACCTGTGGCGTGCGGCCAAGCTGTTCTTCCGCAACCGCAACCGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGGAAGAGCTGAAGAAGGCTTGCTCCGAGGCGGGCACCATTACCGAAGCCATCGCTAAC]
consensusID : consensus_5026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[AATCCGAGGTTAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCTGCGATCAGAACCAGCACGTAGACCTGTGGCTGTGCTGGCCAAGCTGTTCTTCCTGCAACCTGCAACCTGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGTGAAGAGCTGAAGAAGTGCTTGCTCCTGAGGCGTGGCACCATTACCTGAGGCCATCGCTAACAACGTCAGCCAGGGGATCGTCCAACTATTACGCGCGCATTTTCTTCGAAACGGAGGAGCAGGCTGGCGAAGGCAGCCGAACTGCTGAACTGGCAAAGTGTTCGAAGGCAAGCGCATCACGCTGCTGCATCTGTCATCCGCGCTGCTGGCAAACTACCAAAACGTCCGTANTATGTGGCGCCGCCTGGAACGCACTGTCACCGAGTGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGGTGATATCGATTTCGTCAACGGCGCAACTGTGGAGCAANACATGCCATCGTTTGCTACCAAGACGTACGCGAGTGCGGGCAGAGAAAGCGCTATGGCCTTGAACAACTTCCCGGGGACCGACCGCAGCCAACAAGGCAGGCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCTGCTTGGTGCTGCGTGCC]
[+] EMBL AL694556 [AATCCGAGGTTAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCTGCGATCAGAACCAGCACGTAGACCTGTGGCTGTGCTGGCCAAGCTGTTCTTCCTGCAACCTGCAACCTGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGTGAAGAGCTGAAGAAGTGCTTGCTCCTGAGGCGTGGCACCATTACCTGAGGCCATCGCTAACAACGTCAGCCAGGGGATCGTCCAACTATTACGCGCGCATTTTCTTCGAAACGGAGGAGCAGGCTGGCGAAGGCAGCCGAACTGCTGAACTGGCAAAGTGTTCGAAGGCAAGCGCATCACGCTGCTGCATCTGTCATCCGCGCTGCTGGCAAACTACCAAAACGTCCGTANTATGTGGCGCCGCCTGGAACGCACTGTCACCGAGTGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGGTGATATCGATTTCGTCAACGGCGCAACTGTGGAGCAANACATGCCATCGTTTGCTACCAAGACGTACGCGAGTGCGGGCAGAGAAAGCGCTATGGCCTTGAACAACTTCCCGGGGACCGACCGCAGCCAACAAGGCAGGCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCTGCTTGGTGCTGCGTGCC]
consensusID : consensus_5026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[CGTTTATGTGGCTCCGCTGGAACGCACTGTCACCGAGGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGTGATATCGATTTCGTCAACCGGCGCAACTGTGGAGAAAATGCCATCGTTTGCTACAAGACGTCGGAGGCGGCAGAGAAAGCGCTTGCCTGCACCACCTTCCCGGCACCGACCGAAGCCAACAAGGAGGCCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCGCTGGTGCTGCGTGCCACAAGCGTGAAGCGTAAGGCAGCTAGCGGCACCGCCAAGGGTGCGGCCGGTGAAGGCAAGACGCGTGAGTCTCGCCCGGCAGGTGGT]
[-] EMBL AGA285442 [CGTTTATGTGGCTCCGCTGGAACGCACTGTCACCGAGGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGTGATATCGATTTCGTCAACCGGCGCAACTGTGGAGAAAATGCCATCGTTTGCTACAAGACGTCGGAGGCGGCAGAGAAAGCGCTTGCCTGCACCACCTTCCCGGCACCGACCGAAGCCAACAAGGAGGCCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCGCTGGTGCTGCGTGCCACAAGCGTGAAGCGTAAGGCAGCTAGCGGCACCGCCAAGGGTGCGGCCGGTGAAGGCAAGACGCGTGAGTCTCGCCCGGCAGGTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5026#1 ------------------------------------------------------------
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 TAACTGGCTGCTCGTGTGGTTTGTGAAAAAGAAAATTCTAGGAAACCCGGAAATAAGTGG 60
consensus_5026#1 ----------------AATCCGAGGTTAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACG 44
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 TTTTAAATTTGTGACTACCAGTTTGCTGTAAGTTTTAAATCTGTGAACAATAATGACTGA 120
consensus_5026#1 ACGTGAATGGGCTGCGATCAGAACCAGCACGTAGACCTGTGGCTGTGCTGGCCAAGCTGT 104
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 CGCCGAGAAGACCGCACCAGAAACCACCGCCGAAACAAAGGA----AACGACCAAAGCGG 176
consensus_5026#1 TCTTCCTGCAACCTGCAACCTGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAA 164
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 AAAACGATGGAACTGAAGGCGATGTGCAAAAGGACAACGAACACCAACGTACGATCAATG 236
consensus_5026#1 ATACGTGAAGAGCTGAAGAAGTGCTTGCTCCTGAGGCGTGGCACCATTACCTGAGGCCAT 224
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 TTGGTAACTTGCCGAAAGATATTACGGAGCAGCAGCTGCGTGATCACTTCGCGGGGCATG 296
consensus_5026#1 CGCTAACAACGTCAGCCAGGGGATCGTCCAACTATTACGCGCGCATTTTCTTCGAAACGG 284
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 AGGTAGAGCGCGTTGAGATTTATCACTATCTCCGCAACACGCTTGCCCTGCTGGTGTTCA 356
consensus_5026#1 AGGAGCAGGCTGGCGAAGGCAGCCGAACTGCTGAACTGGCAAAGTGTTCGAAGGCAAGCG 344
consensus_5026#2 ------------------------------------------------------------
consensus_5026#0 AGGAGAAAGCGGCCGCTCAGAAGGCTTGTGAGGAGAAGGATGGTTCGATGCTGAATGATC 416
consensus_5026#1 CATCACGCTGCTGCATCTGTCATCCGCGCTGCTGGCAAACTACCAAAACGTCCGTANTAT 404
consensus_5026#2 ----------------------------------------------------CGT-TTAT 7
consensus_5026#0 GTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGAT-T 475
*** * *
consensus_5026#1 GTGGCGCCGCCTGGAACGCACTGTCACCGAGTGAGGAAGTGTACGAGCATTTCAAGCAGT 464
consensus_5026#2 GTGGCTCCGC-TGGAACGCACTGTCACCGAG-GAGGAAGTGTACGAGCATTTCAAGCAGT 65
consensus_5026#0 GTGGC-CGTCTTGGACGATGACATGACCGAG-GAGAAGCTGTACGATCGCGTCAAGGAGC 533
***** * * **** * ****** *** * ******* * ***** **
consensus_5026#1 TC----GGGTGATATCGAT-TTCGTCAAC-GGCGCAACTGTGGAGCAANACATGCCATCG 518
consensus_5026#2 TC----GG-TGATATCGAT-TTCGTCAACCGGCGCAACTGTGGAGAAAA---TGCCATCG 116
consensus_5026#0 ACTGCGAGGTCACGCAGGTGTTCATCTTCCATCCGCTCGGCTACGTGCACCTTGGCAAGG 593
* * * * * * *** ** * * * * * ** ** *
consensus_5026#1 TTTGCTACCAAG--ACGTACGCGAGTGCGGGCAGAGAAAGCGCTATGGCCTTGAACAACT 576
consensus_5026#2 TTTGCTAC-AAG--ACGT---CGGAGGCGG-CAGAGAAAGCGCT-TG--CCTGCACCACC 166
consensus_5026#0 ATGTCGATAAGGCAGCGGTGCTGGAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACG 653
* * * * * ** * * * * *** ** * ** **
consensus_5026#1 TCCCGGGGACCGACCGCAGCCAACAAGGCAGGCACCAAGA--CGGTCA--CCGTCTTGCG 632
consensus_5026#2 TTCCCGGCACCGACCGAAGCCAACAAGGAGGCCACCAAGA--CGGTCA--CCGTCTTGCG 222
consensus_5026#0 TGAATGGGCGCGATCAGAACCAGCACGTCGACCTGTGGCGTGCGGCCAAGCTGTTCTTCC 713
* ** *** * * *** ** * * *** ** * ** * *
consensus_5026#1 GTACGATGGGCCTGCTTGGTGCTGCGTGCC------------------------------ 662
consensus_5026#2 GTACGATGGGCCG--CTGGTGCTGCGTGCCACAAGCGTGAAGCGTAAGGCAGCTAGCGGC 280
consensus_5026#0 GCAACCGCAACCGG-GTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATA-CGGA 771
* * ** ** ***** *
consensus_5026#1 ----------------------------------------------------------
consensus_5026#2 ACCGCCAAGGGTGCGGCCGGTGAAGGCAAGACGCGTGAGTCTCGCC-CGGCAGGTGGT 337
consensus_5026#0 AGAGCTGAAGAAGGCTTGCTCCGAGGCGGGCACCATTACCGAAGCCATCGCTAAC--- 826
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||