These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence [TAACTGGCTGCTCGTGTGGTTTGTGAAAAAGAAAATTCTAGGAAACCCGGAAATAAGTGGTTTTAAATTTGTGACTACCAGTTTGCTGTAAGTTTTAAATCTGTGAACAATAATGACTGACGCCGAGAAGACCGCACCAGAAACCACCGCCGAAACAAAGGAAACGACCAAAGCGGAAAACGATGGAACTGAAGGCGATGTGCAAAAGGACAACGAACACCAACGTACGATCAATGTTGGTAACTTGCCGAAAGATATTACGGAGCAGCAGCTGCGTGATCACTTCGCGGGGCATGAGGTAGAGCGCGTTGAGATTTATCACTATCTCCGCAACACGCTTGCCCTGCTGGTGTTCAAGGAGAAAGCGGCCGCTCAGAAGGCTTGTGAGGAGAAGGATGGTTCGATGCTGAATGATCGTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGATTGTGGCCGTCTTGGACGATGACATGACCGAGGAGAAGCTGTACGATCGCGTCAAGGAGCACTGCGAGGTCACGCAGGTGTTCATCTTCCATCCGCTCGGCTACGTGCACCTTGGCAAGGATGTCGATAAGGCAGCGGTGCTGGAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCGCGATCAGAACCAGCACGTCGACCTGTGGCGTGCGGCCAAGCTGTTCTTCCGCAACCGCAACCGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGGAAGAGCTGAAGAAGGCTTGCTCCGAGGCGGGCACCATTACCGAAGCCATCGCTAAC] [+] EMBL BX602931 [TAACTGGCTGCTCGTGTGGTTTGTGAAAAAGAAAATTCTAGGAAACCCGGAAATAAGTGGTTTTAAATTTGTGACTACCAGTTTGCTGTAAGTTTTAAATCTGTGAACAATAATGACTGACGCCGAGAAGACCGCACCAGAAACCACCGCCGAAACAAAGGAAACGACCAAAGCGGAAAACGATGGAACTGAAGGCGATGTGCAAAAGGACAACGAACACCAACGTACGATCAATGTTGGTAACTTGCCGAAAGATATTACGGAGCAGCAGCTGCGTGATCACTTCGCGGGGCATGAGGTAGAGCGCGTTGAGATTTATCACTATCTCCGCAACACGCTTGCCCTGCTGGTGTTCAAGGAGAAAGCGGCCGCTCAGAAGGCTTGTGAGGAGAAGGATGGTTCGATGCTGAATGATCGTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGATTGTGGCCGTCTTGGACGATGACATGACCGAGGAGAAGCTGTACGATCGCGTCAAGGAGCACTGCGAG ] [+] EMBL AGA284146 [ TTGTGAGGAGAAGGATGGTTCGATGCTGAATGATCGTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGATTGTGGCCGTCTTGGACGATGACATGACCGAGGAGAAGCTGTACGATCGCGTCAAGGAGCACTGCGAGGTCACGCAGGTGTTCATCTTCCATCCGCTCGGCTACGTGCACCTTGGCAAGGATGTCGATAAGGCAGCGGTGCTGGAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCGCGATCAGAACCAGCACGTCGACCTGTGGCGTGCGGCCAAGCTGTTCTTCCGCAACCGCAACCGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGGAAGAGCTGAAGAAGGCTTGCTCCGAGGCGGGCACCATTACCGAAGCCATCGCTAAC] consensusID : consensus_5026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [AATCCGAGGTTAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCTGCGATCAGAACCAGCACGTAGACCTGTGGCTGTGCTGGCCAAGCTGTTCTTCCTGCAACCTGCAACCTGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGTGAAGAGCTGAAGAAGTGCTTGCTCCTGAGGCGTGGCACCATTACCTGAGGCCATCGCTAACAACGTCAGCCAGGGGATCGTCCAACTATTACGCGCGCATTTTCTTCGAAACGGAGGAGCAGGCTGGCGAAGGCAGCCGAACTGCTGAACTGGCAAAGTGTTCGAAGGCAAGCGCATCACGCTGCTGCATCTGTCATCCGCGCTGCTGGCAAACTACCAAAACGTCCGTANTATGTGGCGCCGCCTGGAACGCACTGTCACCGAGTGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGGTGATATCGATTTCGTCAACGGCGCAACTGTGGAGCAANACATGCCATCGTTTGCTACCAAGACGTACGCGAGTGCGGGCAGAGAAAGCGCTATGGCCTTGAACAACTTCCCGGGGACCGACCGCAGCCAACAAGGCAGGCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCTGCTTGGTGCTGCGTGCC] [+] EMBL AL694556 [AATCCGAGGTTAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACGTGAATGGGCTGCGATCAGAACCAGCACGTAGACCTGTGGCTGTGCTGGCCAAGCTGTTCTTCCTGCAACCTGCAACCTGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATACGTGAAGAGCTGAAGAAGTGCTTGCTCCTGAGGCGTGGCACCATTACCTGAGGCCATCGCTAACAACGTCAGCCAGGGGATCGTCCAACTATTACGCGCGCATTTTCTTCGAAACGGAGGAGCAGGCTGGCGAAGGCAGCCGAACTGCTGAACTGGCAAAGTGTTCGAAGGCAAGCGCATCACGCTGCTGCATCTGTCATCCGCGCTGCTGGCAAACTACCAAAACGTCCGTANTATGTGGCGCCGCCTGGAACGCACTGTCACCGAGTGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGGTGATATCGATTTCGTCAACGGCGCAACTGTGGAGCAANACATGCCATCGTTTGCTACCAAGACGTACGCGAGTGCGGGCAGAGAAAGCGCTATGGCCTTGAACAACTTCCCGGGGACCGACCGCAGCCAACAAGGCAGGCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCTGCTTGGTGCTGCGTGCC] consensusID : consensus_5026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [CGTTTATGTGGCTCCGCTGGAACGCACTGTCACCGAGGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGTGATATCGATTTCGTCAACCGGCGCAACTGTGGAGAAAATGCCATCGTTTGCTACAAGACGTCGGAGGCGGCAGAGAAAGCGCTTGCCTGCACCACCTTCCCGGCACCGACCGAAGCCAACAAGGAGGCCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCGCTGGTGCTGCGTGCCACAAGCGTGAAGCGTAAGGCAGCTAGCGGCACCGCCAAGGGTGCGGCCGGTGAAGGCAAGACGCGTGAGTCTCGCCCGGCAGGTGGT] [-] EMBL AGA285442 [CGTTTATGTGGCTCCGCTGGAACGCACTGTCACCGAGGAGGAAGTGTACGAGCATTTCAAGCAGTTCGGTGATATCGATTTCGTCAACCGGCGCAACTGTGGAGAAAATGCCATCGTTTGCTACAAGACGTCGGAGGCGGCAGAGAAAGCGCTTGCCTGCACCACCTTCCCGGCACCGACCGAAGCCAACAAGGAGGCCACCAAGACGGTCACCGTCTTGCGGTACGATGGGCCGCTGGTGCTGCGTGCCACAAGCGTGAAGCGTAAGGCAGCTAGCGGCACCGCCAAGGGTGCGGCCGGTGAAGGCAAGACGCGTGAGTCTCGCCCGGCAGGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5026#1 ------------------------------------------------------------ consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 TAACTGGCTGCTCGTGTGGTTTGTGAAAAAGAAAATTCTAGGAAACCCGGAAATAAGTGG 60 consensus_5026#1 ----------------AATCCGAGGTTAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACG 44 consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 TTTTAAATTTGTGACTACCAGTTTGCTGTAAGTTTTAAATCTGTGAACAATAATGACTGA 120 consensus_5026#1 ACGTGAATGGGCTGCGATCAGAACCAGCACGTAGACCTGTGGCTGTGCTGGCCAAGCTGT 104 consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 CGCCGAGAAGACCGCACCAGAAACCACCGCCGAAACAAAGGA----AACGACCAAAGCGG 176 consensus_5026#1 TCTTCCTGCAACCTGCAACCTGGGTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAA 164 consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 AAAACGATGGAACTGAAGGCGATGTGCAAAAGGACAACGAACACCAACGTACGATCAATG 236 consensus_5026#1 ATACGTGAAGAGCTGAAGAAGTGCTTGCTCCTGAGGCGTGGCACCATTACCTGAGGCCAT 224 consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 TTGGTAACTTGCCGAAAGATATTACGGAGCAGCAGCTGCGTGATCACTTCGCGGGGCATG 296 consensus_5026#1 CGCTAACAACGTCAGCCAGGGGATCGTCCAACTATTACGCGCGCATTTTCTTCGAAACGG 284 consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 AGGTAGAGCGCGTTGAGATTTATCACTATCTCCGCAACACGCTTGCCCTGCTGGTGTTCA 356 consensus_5026#1 AGGAGCAGGCTGGCGAAGGCAGCCGAACTGCTGAACTGGCAAAGTGTTCGAAGGCAAGCG 344 consensus_5026#2 ------------------------------------------------------------ consensus_5026#0 AGGAGAAAGCGGCCGCTCAGAAGGCTTGTGAGGAGAAGGATGGTTCGATGCTGAATGATC 416 consensus_5026#1 CATCACGCTGCTGCATCTGTCATCCGCGCTGCTGGCAAACTACCAAAACGTCCGTANTAT 404 consensus_5026#2 ----------------------------------------------------CGT-TTAT 7 consensus_5026#0 GTCGGCTTCGCATCCATATCGAGTACATTACCATCCGGTACACCAAGAAGGACGTGAT-T 475 *** * * consensus_5026#1 GTGGCGCCGCCTGGAACGCACTGTCACCGAGTGAGGAAGTGTACGAGCATTTCAAGCAGT 464 consensus_5026#2 GTGGCTCCGC-TGGAACGCACTGTCACCGAG-GAGGAAGTGTACGAGCATTTCAAGCAGT 65 consensus_5026#0 GTGGC-CGTCTTGGACGATGACATGACCGAG-GAGAAGCTGTACGATCGCGTCAAGGAGC 533 ***** * * **** * ****** *** * ******* * ***** ** consensus_5026#1 TC----GGGTGATATCGAT-TTCGTCAAC-GGCGCAACTGTGGAGCAANACATGCCATCG 518 consensus_5026#2 TC----GG-TGATATCGAT-TTCGTCAACCGGCGCAACTGTGGAGAAAA---TGCCATCG 116 consensus_5026#0 ACTGCGAGGTCACGCAGGTGTTCATCTTCCATCCGCTCGGCTACGTGCACCTTGGCAAGG 593 * * * * * * *** ** * * * * * ** ** * consensus_5026#1 TTTGCTACCAAG--ACGTACGCGAGTGCGGGCAGAGAAAGCGCTATGGCCTTGAACAACT 576 consensus_5026#2 TTTGCTAC-AAG--ACGT---CGGAGGCGG-CAGAGAAAGCGCT-TG--CCTGCACCACC 166 consensus_5026#0 ATGTCGATAAGGCAGCGGTGCTGGAAAAGCTGAACGCCGGCGGGCTGAAGGCGTACGACG 653 * * * * * ** * * * * *** ** * ** ** consensus_5026#1 TCCCGGGGACCGACCGCAGCCAACAAGGCAGGCACCAAGA--CGGTCA--CCGTCTTGCG 632 consensus_5026#2 TTCCCGGCACCGACCGAAGCCAACAAGGAGGCCACCAAGA--CGGTCA--CCGTCTTGCG 222 consensus_5026#0 TGAATGGGCGCGATCAGAACCAGCACGTCGACCTGTGGCGTGCGGCCAAGCTGTTCTTCC 713 * ** *** * * *** ** * * *** ** * ** * * consensus_5026#1 GTACGATGGGCCTGCTTGGTGCTGCGTGCC------------------------------ 662 consensus_5026#2 GTACGATGGGCCG--CTGGTGCTGCGTGCCACAAGCGTGAAGCGTAAGGCAGCTAGCGGC 280 consensus_5026#0 GCAACCGCAACCGG-GTGCAGCTGCTGAACATACCCCAGAAGTGGGTAGAAAATA-CGGA 771 * * ** ** ***** * consensus_5026#1 ---------------------------------------------------------- consensus_5026#2 ACCGCCAAGGGTGCGGCCGGTGAAGGCAAGACGCGTGAGTCTCGCC-CGGCAGGTGGT 337 consensus_5026#0 AGAGCTGAAGAAGGCTTGCTCCGAGGCGGGCACCATTACCGAAGCCATCGCTAAC--- 826 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||