These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1561 fasta sequence [GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTCTATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAATTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTGGGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATGTAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGCATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTCGACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCATCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTTCTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATCTTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCATAAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGCACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAGC] [+] EMBL CNS08U73 [GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTCTATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAATTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTGGGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATGTAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGCATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTCGACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTA ] [-] EMBL BX622100 [ TCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTAACATCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCATCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGG ] [-] EMBL BX621940 [ AGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTTCTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATCTTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCATAAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGCACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAGC] consensusID : consensus_5045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG] [-] EMBL CNS08U72 [ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5045#0 GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTC 60 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAA 120 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTG 180 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 GGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATG 240 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGC 300 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 ATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTC 360 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 GACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGAT 420 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGC 480 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGT 540 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGA 600 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTG 660 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCA 720 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTA 780 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCA 840 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCT 900 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTT 960 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATC 1020 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCAT 1080 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGC 1140 consensus_5045#1 --------------------------ACGATCGGAA-AAACACACACACGCTCTAATCGC 33 ******* * * ********************* consensus_5045#0 ACT-CATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTT 1199 consensus_5045#1 ACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTT 93 *** *********** ******************************* ********* consensus_5045#0 GTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTG 1259 consensus_5045#1 GTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTG 153 ************************************************************ consensus_5045#0 TGGAACCATTCGCGCGTACACACACACACACACACACACACACA----------AT-TAG 1308 consensus_5045#1 TGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAG 213 **************** ************************** ** *** consensus_5045#0 CTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTA 1368 consensus_5045#1 CTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTA 273 *********** * ********************* *********************** consensus_5045#0 TATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGAT 1428 consensus_5045#1 TACTACGCCAATGTGCCTCCTT-CTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGAT 332 ** ******************* ************************************* consensus_5045#0 GCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGA 1488 consensus_5045#1 GCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGA 392 ************************************************************ consensus_5045#0 AGTAAATTTTTAACGAAATCGCTTTCTTTTCC-CCACCGCACATT-CTTATTGCTTGTTT 1546 consensus_5045#1 AGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTT 452 ******************************** ******* ** ************** consensus_5045#0 AGAAAGGCTTTTAGC--------------------------------------------- 1561 consensus_5045#1 AGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACA 512 *************** consensus_5045#0 ------------------ consensus_5045#1 AAGTCAAGGAGTAAAAAG 530 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||