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Anopheles gambiae
cluster # 5045 cluster # 5045       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5045#0 length = 1561 sequences # 3  
consensus_5045#1 length = 530 sequences # 1  

consensusID : consensus_5045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1561
fasta sequence
                              [GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTCTATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAATTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTGGGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATGTAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGCATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTCGACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCATCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTTCTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATCTTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCATAAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGCACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAGC]

[+] EMBL CNS08U73             [GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTCTATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAATTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTGGGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATGTAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGCATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTCGACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BX622100             [                                                                                                                                                                                                                                                                                                                                                                                             TCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTAACATCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCATCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL BX621940             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTTCTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATCTTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCATAAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGCACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAGC]


>consensus_5045#0 GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTC TATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAA TTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTG GGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATG TAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGC ATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTC GACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGAT CACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGC CAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGT CCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGA AAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTG CTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCA TATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTA TAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCA TCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCT TGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTT CTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATC TTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCAT AAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGC ACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTG TTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGT GGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACAC ACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAAT GTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTG GATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTA ACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAG C



consensusID : consensus_5045#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence
                              [ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG]

[-] EMBL CNS08U72             [ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG]


>consensus_5045#1 ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTG TGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACA CACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACAC ACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACA ATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTT ACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAG TAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTT TTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGT GTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5045#0      GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTC 60
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAA 120
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTG 180
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      GGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATG 240
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGC 300
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      ATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTC 360
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      GACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGAT 420
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      CACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGC 480
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      CAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGT 540
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      CCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGA 600
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      AAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTG 660
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      CTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCA 720
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTA 780
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCA 840
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCT 900
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTT 960
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      CTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATC 1020
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      TTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCAT 1080
consensus_5045#1      ------------------------------------------------------------
                                                                                  

consensus_5045#0      AAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGC 1140
consensus_5045#1      --------------------------ACGATCGGAA-AAACACACACACGCTCTAATCGC 33
                                                ******* *  * *********************

consensus_5045#0      ACT-CATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTT 1199
consensus_5045#1      ACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTT 93
                      *** *********** *******************************    *********

consensus_5045#0      GTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTG 1259
consensus_5045#1      GTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTG 153
                      ************************************************************

consensus_5045#0      TGGAACCATTCGCGCGTACACACACACACACACACACACACACA----------AT-TAG 1308
consensus_5045#1      TGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAG 213
                      ****************  **************************          ** ***

consensus_5045#0      CTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTA 1368
consensus_5045#1      CTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTA 273
                      *********** *  ********************* ***********************

consensus_5045#0      TATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGAT 1428
consensus_5045#1      TACTACGCCAATGTGCCTCCTT-CTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGAT 332
                      ** ******************* *************************************

consensus_5045#0      GCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGA 1488
consensus_5045#1      GCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGA 392
                      ************************************************************

consensus_5045#0      AGTAAATTTTTAACGAAATCGCTTTCTTTTCC-CCACCGCACATT-CTTATTGCTTGTTT 1546
consensus_5045#1      AGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTT 452
                      ******************************** *******   ** **************

consensus_5045#0      AGAAAGGCTTTTAGC--------------------------------------------- 1561
consensus_5045#1      AGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACA 512
                      ***************                                             

consensus_5045#0      ------------------
consensus_5045#1      AAGTCAAGGAGTAAAAAG 530
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)