cluster # 5046

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Anopheles gambiae
cluster # 5046 cluster # 5046 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5046#0 length = 973 sequences # 3

consensus_5046#1 length = 759 sequences # 1

consensusID : consensus_5046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 973
fasta sequence

                              [CCGGCATAACAACAAACCTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAACAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAA-GAACGTGCTTTCCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAAAACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACAGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGGGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGAAGTGCCGTTTACATTTATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTAAACTGCATCATGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAGCTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGGCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTATGTTCCGGAAAGCGGTGGAAAAGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAAAAGTCGTCACAGATGATAGTTAATACATTGGTGGATCATTAATCGTGACCTTCTTTCTGAACATAATATCCGACATTTTGGGTGAGATTGAAATGGTGAACCCCACCTGTTTACTAACTGTTAATTTCTATTAACTAACCCTAACTAATACCTTTTGGCAATCTCTGTGGCCGGTTTCCTCTAATATGGTGATATTTAAGGGTTCATATGTCTCATTAAAGGTTTGCAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCC]

[+] EMBL CNS09N1J             [CCGGCATAACAACAAACCTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAACAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAA GAACGTGCTTTCCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGC AAACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACAGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGCGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGCAGTGCCGTTTACATTTATGTGCAAGAAATAAACGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTACACTGCATCATGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAGCTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGGCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTATGTTCCGGAAAGCGGTGGAAAAGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAAAAGTCGTCACAGATGATAGTTAATACATTGGTGGATCATTAATCGTGACCTTCTTTCTGAACATAATATCCGACATTTTGGGTGAGATTGAAATGGTGAACCCCACCTGTTTACTAACTGTTAATTTCTATTAACTAACCCTAACTAATACCTTTTGGCAATCTCTGTGGCCGGTTTCCTCTAATATGGTGATATTTAAGGGTTCATATGTCTCATTAAAGGTTTGCAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCC]
[-] EMBL CNS09N1K             [                                            ATGGTTACGGATTCAACAAAAACGATGGCAAATTCGCTCCAACTACGGCGGATGGTATGTGAAACGAACGTGCTTTCCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAAAACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACAGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGGGCTCGTTTGTGCGCGTTGTCGCCACGCCCGCGTTCTGTCGAAGTGCCGTTTACATTTATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTAAACTGCATCATGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAGCTCGaacttt                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CNS08GF7             [                                                                                                                                                        GGTGCAAAACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCTTCTGGAGGTACAGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGGGCTCGTTTGTGCGCGTTGTCGCAACGCCCGCGTTTTGTCGAAGTGCCGTTTACATTTATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTAAACTGCATCATGACCGAGGACGGTGCAATGAAACTCGATCCCGATCACAAACAGCTGAGGCTGGCCCGCCGCTCGTTCACGTTTGTGTTCCACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGGCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTTTGTGCCGGAAAGCGGTGGAAAAGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAAAAGTCGTCACAGATGATAGTTAATACATTG                                                                                                                                                                                                                                                  ]




>consensus_5046#0
CCGGCATAACAACAAACCTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAA
CAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAAGAACGTGCTTTC
CCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAAAACAGGTGATGGTGGCTGCCAA
TGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACA
GTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAA
GGGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGAAGTGCCGTTTACATTTA
TGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCT
GGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTAAACTGCATCAT
GACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAG
CTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGG
CAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTATGTTCCGGAAAGCGGTGGAAAA
GATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAAAAGTCGTCACAGATGATAG
TTAATACATTGGTGGATCATTAATCGTGACCTTCTTTCTGAACATAATATCCGACATTTT
GGGTGAGATTGAAATGGTGAACCCCACCTGTTTACTAACTGTTAATTTCTATTAACTAAC
CCTAACTAATACCTTTTGGCAATCTCTGTGGCCGGTTTCCTCTAATATGGTGATATTTAA
GGGTTCATATGTCTCATTAAAGGTTTGCAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAA
GGCCACATGTGCC

consensusID : consensus_5046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 759
fasta sequence

                              [CTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAACAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAACGAACGTGCTTTCCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAACACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACAGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGCGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGCAGTGCCGTTTACATTTATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTACACTGCATCATGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAGCTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGGCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTTTGTTCCGGAAAGCGGTGGAAAAGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAATAGTCGTCACAGATGATAGTTAATACATTGGTGGATCATTAAAAAAAAAAAAAAAAAAGGCCACAAGTTCCCGC]

[+] EMBL CNS08GF6             [CTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAACAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAACGAACGTGCTTTCCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAACACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACAGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGCGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGCAGTGCCGTTTACATTTATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTACACTGCATCATGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAGCTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGGCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTTTGTTCCGGAAAGCGGTGGAAAAGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAATAGTCGTCACAGATGATAGTTAATACATTGGTGGATCATTAAAAAAAAAAAAAAAAAAGGCCACAAGTTCCCGC]




>consensus_5046#1
CTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAACAAAAACGATGGCAAAT
TCGCTCAACCTACGGCGGATGGTATGTGAAACGAACGTGCTTTCCCGGTCGGACTGTTCG
GCAGCATTATCACAAGGTGCAACACAGGTGATGGTGGCTGCCAATGGTCCCGCCGAGGTA
AAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTACAGTACCGCTCGAACGCG
GGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAAAGCGCTCGTTTGTGCGC
GTTGTCGCGACGCCCGCGTTCTGTCGCAGTGCCGTTTACATTTATGTGCAAGAAATGACC
GATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCCTGGCACTGATTACGAGT
GGAGTCGAGCTTAACTTTACCGTCGCCGCCGTACACTGCATCATGACCGAGGACGGTGCA
ATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCAGCTCGTTCACGTTTGTG
TTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACGGCAGCTTCACGTTCGAG
GAGTACGAGCAAGTCGTGAGTTTGTTCCGGAAAGCGGTGGAAAAGATATTCGATTTTTAC
CGGAAGGTGTCGCAAAACATAACAATAGTCGTCACAGATGATAGTTAATACATTGGTGGA
TCATTAAAAAAAAAAAAAAAAAAGGCCACAAGTTCCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5046#0      CCGGCATAACAACAAACCTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAA 60
consensus_5046#1      -----------------CTCCAAAACGCGGCGCACCGATAGAACATGGTTACGGATTCAA 43
                                       *******************************************

consensus_5046#0      CAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAA-GAACGTGCTTT 119
consensus_5046#1      CAAAAACGATGGCAAATTCGCTCAACCTACGGCGGATGGTATGTGAAACGAACGTGCTTT 103
                      ************************************************ ***********

consensus_5046#0      CCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAAAACAGGTGATGGTGGCTGCCA 179
consensus_5046#1      CCCGGTCGGACTGTTCGGCAGCATTATCACAAGGTGCAACACAGGTGATGGTGGCTGCCA 163
                      *************************************** ********************

consensus_5046#0      ATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTAC 239
consensus_5046#1      ATGGTCCCGCCGAGGTAAAGTTTAAAAATGCCGAATCGGAAAACTGCCATCTGGAGGTAC 223
                      ************************************************************

consensus_5046#0      AGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAA 299
consensus_5046#1      AGTACCGCTCGAACGCGGGGCAAGAAGACATCCAGCACCGGCTGATGGAGAGTCTTATAA 283
                      ************************************************************

consensus_5046#0      AGGGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGAAGTGCCGTTTACATTT 359
consensus_5046#1      AGCGCTCGTTTGTGCGCGTTGTCGCGACGCCCGCGTTCTGTCGCAGTGCCGTTTACATTT 343
                      ** **************************************** ****************

consensus_5046#0      ATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCC 419
consensus_5046#1      ATGTGCAAGAAATGACCGATCGGGGTGGGCTACTTGCCTGCTCCATCAATGCGTCCTGCC 403
                      ************************************************************

consensus_5046#0      TGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTAAACTGCATCA 479
consensus_5046#1      TGGCACTGATTACGAGTGGAGTCGAGCTTAACTTTACCGTCGCCGCCGTACACTGCATCA 463
                      ************************************************** *********

consensus_5046#0      TGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCA 539
consensus_5046#1      TGACCGAGGACGGTGCAATGATACTCGATCCCGATCACAAACAGCTGAAGCTGGCCCGCA 523
                      ************************************************************

consensus_5046#0      GCTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACG 599
consensus_5046#1      GCTCGTTCACGTTTGTGTTCGACAGCATTGGGAAGAACACGGTCACGTCGTACGTGCACG 583
                      ************************************************************

consensus_5046#0      GCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTATGTTCCGGAAAGCGGTGGAAA 659
consensus_5046#1      GCAGCTTCACGTTCGAGGAGTACGAGCAAGTCGTGAGTTTGTTCCGGAAAGCGGTGGAAA 643
                      ************************************** *********************

consensus_5046#0      AGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAAAAGTCGTCACAGATGATA 719
consensus_5046#1      AGATATTCGATTTTTACCGGAAGGTGTCGCAAAACATAACAATAGTCGTCACAGATGATA 703
                      ****************************************** *****************

consensus_5046#0      GTTAATACATTGGTGGATCATTAATCGTGACCTTCTTTCTGAACATAATATCCGACATTT 779
consensus_5046#1      GTTAATACATTGGTGGATCATTAAAAAAAAAAAAAAAAAAGGCCACAAGTTCCCGC---- 759
                      ************************     *          *  ** **  ***  *    

consensus_5046#0      TGGGTGAGATTGAAATGGTGAACCCCACCTGTTTACTAACTGTTAATTTCTATTAACTAA 839
consensus_5046#1      ------------------------------------------------------------
                                                                                  

consensus_5046#0      CCCTAACTAATACCTTTTGGCAATCTCTGTGGCCGGTTTCCTCTAATATGGTGATATTTA 899
consensus_5046#1      ------------------------------------------------------------
                                                                                  

consensus_5046#0      AGGGTTCATATGTCTCATTAAAGGTTTGCAAAGAGAAAAAAAAAAAAAAAAAAAAAAAAA 959
consensus_5046#1      ------------------------------------------------------------
                                                                                  

consensus_5046#0      AGGCCACATGTGCC 973
consensus_5046#1      --------------