These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 875 fasta sequence [AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGAAGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAATTAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCTCGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTCTTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGGTGCGCCGGCAGATGGGCGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACTGGCCAACGCGCCAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCAC-GGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGATCAAACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGTCTGTCTGATCGGTGACGCAGCGCACCGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG] [+] EMBL BX604244 [AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGAAGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAATTAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCTCGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTCTTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGGTGCGCCGGCAGATGGGCGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACTGGCCAACGCGCCAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCACGGGAACACGCTGGg ] [+] EMBL BM611590 [ ccgCGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCCCTGCTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCAC GGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGATCAAACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGTCTGTCTGATCGGTGACGCAGCGCACCGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG] [+] EMBL AGA284620 [ CTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCAC GGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGATCAAACAAACGACCGGACAGCGCCTGGAGGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGTCTGTCTGATTGGTGACGCAGCGCACCGGGTCCATCCACTGGGCGGGCAGGGCGTTTATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGC ] consensusID : consensus_5047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [GATCGCCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACGATGTGATNAAGGGTGTCCACTCGCTGATCAAACAAAGCGACCGGACAGCGCCTGGAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGACGACGACACTGAGCACCTACGATTGGGCAGGGCGTCTGTCTGATTGGTGACGCACGCTGCACCNGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACGAGCAGCAGCGGCTGAAGCACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTTTACACCACCGACTTCGTGCCGACGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAACGCGTTGNCACCGGTCAAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACTCTGGAAGCGACGGTACCAAAGAGGCA] [+] EMBL AL697553 [GATCGCCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACGATGTGATNAAGGGTGTCCACTCGCTGATCAAACAAAGCGACCGGACAGCGCCTGGAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGACGACGACACTGAGCACCTACGATTGGGCAGGGCGTCTGTCTGATTGGTGACGCACGCTGCACCNGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACGAGCAGCAGCGGCTGAAGCACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTTTACACCACCGACTTCGTGCCGACGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAACGCGTTGNCACCGGTCAAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACTCTGGAAGCGACGGTACCAAAGAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5047#0 AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGA 60 consensus_5047#1 ------------------------------------------------------------ consensus_5047#0 AGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAAT 120 consensus_5047#1 ------------------------------------------------------------ consensus_5047#0 TAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCT 180 consensus_5047#1 ------------------------------------------------------------ consensus_5047#0 CGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTC 240 consensus_5047#1 ------------------------------------------------------------ consensus_5047#0 TTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGG--TGCGCCGGCAGATG 298 consensus_5047#1 ---------------GATCG-CCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACG 44 * *** * ** * **** * ** ** *** ** ** * consensus_5047#0 G-GCGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACT 357 consensus_5047#1 ATGTGATNAAGGGTGTCCACTCGCT---GATCAAA------------CAAAGC---GACC 86 * * ** * * * ***** * ** * *** ** *** consensus_5047#0 GGCCAACGCGCC-AAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGA 416 consensus_5047#1 GGACAGCGCCTGGAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGA 146 ** ** *** *********************************************** consensus_5047#0 TCGCTCTACTGCCCCTCAG-CGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCG 475 consensus_5047#1 TCGCTCTACTGCCCCTCAGACGACGACACTGA---GCACCTACGATTGGGCAGGGCGTCT 203 ******************* ********* ** * * * * * * * * * consensus_5047#0 GAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCC 535 consensus_5047#1 GT--CTGATTGGTGACGCACGCTGCACCNGGGTCCATCCACTG-GCCGGGCAGGGCGTTA 260 * * * * * **** ** * * * ** ** * * * ** ** consensus_5047#0 TTCCACAAACCGATGCCACGGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCG 595 consensus_5047#1 ATCTGGGCTTCGGCGACGTGCAG-ACGCTGGTGGACGTGCTGGCCGACGCTAACTATGCC 319 ** ** * * * * ******** **** ** * * * * * * consensus_5047#0 CTGATCAA-ACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGT 654 consensus_5047#1 GGGCTCGGCATCAGCAAC--GTCAGCGAGCTGCTCAAGTACGAGCAGCAGCGGCTGAAGC 377 * ** * * * ** * ***** * * ** ** * * *** **** consensus_5047#0 GGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACT----CGGCCACACGAGCACCTACGTTG 710 consensus_5047#1 ACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTTTAC-ACCACCGACTTCG 436 ** * ** * * * * *** * * ** **** ** * **** ** * * consensus_5047#0 GGCAGGGCGTCTGTCTGATCGGTGACGCAGCGCAC-CGGGTCCATCCACTGGC--CGGGC 767 consensus_5047#1 TGCCGA-CGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAACGCGTTGNCACCGGTC 495 ** * **** *** * * * ** ** * * * * * ** * *** * consensus_5047#0 AGGGCGTTAATCTGGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTA 827 consensus_5047#1 AAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACTCTGGAAGCGACGGTA 555 * * ** * * * ** * ** * * **** ** ***** ** consensus_5047#0 ACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG 875 consensus_5047#1 CCAAAGAGGCA------------------------------------- 566 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||