cluster # 5052

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Anopheles gambiae
cluster # 5052 cluster # 5052 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5052#0 length = 679 sequences # 2

consensus_5052#1 length = 658 sequences # 2

consensusID : consensus_5052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence

                              [CCGCCGATACAGTCCAAGTTCTACTACGTGCCCGGCGAGCTGAACGGCAGTGGGTTGGAGTGTCGCGATTGCTCCAGTGCCGAGCTGATCGATCCCGAGTTCGATCCCGTCGCCCGTGGGGAAGACCTGGAGGGTCAGAGTGTCGTACTGCTGCCCGAGGAGGAAGATGCACTCGATGGAGAGAGCCAGCACCACCGTCAGCAGCATCCGATGGTGGGCGACGAGCGGCCGAGCGAGCTGGAGGTTCAGCTGAACGCCGAGGACGACGAGGACGAGGATGGATTCTACACCGAACGATACGATACCGTTATGGACGAGGATAGCATCGGGGGTGATGAGCATGTCTACAGCTCATACACGGATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTCCTGCCGAAGCCGTTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTACTACGAGCCGAGCTGCTGCTACATGCCGCTGCCACCGCCACCGCCGCCACCGCCTCCGCCGGGACACTTCCATCACGCTCACGCTCATCATCATCATGGACATTCGGGGCTCCCGCTCGGACCACCGCCGTCCGTCACCGGGGACGATCCTG]

[+] EMBL BM623991             [CCGCCGATACAGTCCAAGTTCTACTACGTGCCCGGCGAGCTGAACGGCAGTGGGTTGGAGTGTCGCGATTGCTCCAGTGCCGAGCTGATCGATCCCGAGTTCGATCCCGTCGCCCGTGGGGAAGACCTGGAGGGTCAGAGTGTCGTACTGCTGCCCGAGGAGGAAGATGCACTCGATGGAGAGAGCCAGCACCACCGTCAGCAGCATCCGATGGTGGGCGACGAGCGGCCGAGCGAGCTGGAGGTTCAGCTGAACGCCGAGGACGACGAGGACGAGGATGGATTCTACACCGAACGATACGATACCGTTATGGACGAGGATAGCATCGGGGGTGATGAGCATGTCTACAGCTCATACACGGATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTCCTGCCGAAGCCGTTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTACTACGAGCCGAGCTGCTGCTACATGCCGCTGCCACCGCCACCGCCGCCACCGCCTCCGCCGGGACACTTCCATCACGCTCACGCTCATCATCATCATGGACATTCGGGGCTCCCGCTCGGACCACCGCCGTCCGTCACCGGGGACGATCCTG]
[+] EMBL AL693022             [                            gaattccCGAGGTTAACGGCAGTGGGTTGGAGTGTCGCGATTGCTCCAGTGCCGAGCTGATCGATCCCGAGTTCGATCCCGTCG CCGTGGGGAAGACCTGGAGGGTCAGAGTGTCGTACTGCTGCCCGAGGAGGAAGATGCACTCGATGGAGAGAGCCAGCACCACCGTCAGCAGCATCCGATGGTGGGCGACGAGCGGCCGAGCGAGCTGGAGGTTCAGCTGAACGCCGAGGACGACGAGGACGAGGATGGATTCTACACCGAACGATACGATACCGTTATGGACGAGGATAGCATCGGGGGTGATGAGCATGTCTACAGCTCATACACGGATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTCCTGCCGAAGCCGTTGCCCCA                                                                                                                                                                                         ]




>consensus_5052#0
CCGCCGATACAGTCCAAGTTCTACTACGTGCCCGGCGAGCTGAACGGCAGTGGGTTGGAG
TGTCGCGATTGCTCCAGTGCCGAGCTGATCGATCCCGAGTTCGATCCCGTCGCCCGTGGG
GAAGACCTGGAGGGTCAGAGTGTCGTACTGCTGCCCGAGGAGGAAGATGCACTCGATGGA
GAGAGCCAGCACCACCGTCAGCAGCATCCGATGGTGGGCGACGAGCGGCCGAGCGAGCTG
GAGGTTCAGCTGAACGCCGAGGACGACGAGGACGAGGATGGATTCTACACCGAACGATAC
GATACCGTTATGGACGAGGATAGCATCGGGGGTGATGAGCATGTCTACAGCTCATACACG
GATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTG
CGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTCCTGCCG
AAGCCGTTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTACTACGAGCCGAGC
TGCTGCTACATGCCGCTGCCACCGCCACCGCCGCCACCGCCTCCGCCGGGACACTTCCAT
CACGCTCACGCTCATCATCATCATGGACATTCGGGGCTCCCGCTCGGACCACCGCCGTCC
GTCACCGGGGACGATCCTG

consensusID : consensus_5052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 658
fasta sequence

                              [CCGGGTTCGGACCGTTTTTGTGTCGCTCGCTCGCTCGTTTCGTTCGTTTTTGCTGCAGGATCCCTCACCTGCGACGTAAAGGGCCAATGTGTGGCCTAGTGTTCCAATTTCGCTCCTACCGCTGAGGGCACACGAGAGTCGCTATCGTCGTCGGCGTGGAATGCTGCGGGAAAGCAAACGTGCAAAGACAATCTCCGGCCAACCTATCTCGCAACGGGGTGCTATCGCAGAGGAAGGAAGTTGATCTGCACGCGTACAAGGGTGCACTGCTTTGTTGGGTGCCATTGTGGGGCATAATGTGTAGTTAAGGCAGCAGTCGGCTGTCAGTCAGTGTCGAGCAACATAGTGTGAAGACTTCTTGCGCGAGTTATTCAAATTCAAACTCAACTCTGAATGTGCGACCGGAGTTGCTGCAAAAGCGTGCATAATTGAGCTGGTGTTCACGACATGTTCGAAAAACGGCCGGAATTAGTTGTGCGGGTGCGATATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTGCTGCCGAAGCCGCTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTACTACG]

[+] EMBL BM632436             [CCGGGTTCGGACCGTTTTTGTGTCGCTCGCTCGCTCGTTTCGTTCGTTTTTGCTGCAGGATCCCTCACCTGCGACGTAAAGGGCCAATGTGTGGCCTAGTGTTCCAATTTCGCTCCTACCGCTGAGGGCACACGAGAGTCGCTATCGTCGTCGGCGTGGAATGCTGCGGGAAAGCAAACGTGCAAAGACAATCTCCGGCCAACCTATCTCGCAACGGGGTGCTATCGCAGAGGAAGGAAGTTGATCTGCACGCGTACAAGGGTGCACTGCTTTGTTGGGTGCCATTGTGGGGCATAATGTGTAGTTAAGGCAGCAGTCGGCTGTCAGTCAGTGTCGAGCAACATAGTGTGAAGACTTCTTGCGCGAGTTATTCAAATTCAAACTCAACTCTGAATGTGCGACCGGAGTTGCTGCAAAAGCGTGCATAATTGAGCTGGTGTTCACGACATGTTCGAAAAACGGCCGGAATTAGTTGTGCGGGTGCGATATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTGCTGCCGAAGCCGCTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTACTACG]
[+] EMBL AGA284928            [                                                                                                                                                                                                                                                                                                                                                                                                                      GTTGCTGCAAAAGCGTGCATAATTGAGCTGGTGTTCACGACATGTTCGAAAAACGGCCGGAATTAGTTGTGCGGGTGCGATATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCGGCGCTGCGCCTGCACA                                                                                                      ]




>consensus_5052#1
CCGGGTTCGGACCGTTTTTGTGTCGCTCGCTCGCTCGTTTCGTTCGTTTTTGCTGCAGGA
TCCCTCACCTGCGACGTAAAGGGCCAATGTGTGGCCTAGTGTTCCAATTTCGCTCCTACC
GCTGAGGGCACACGAGAGTCGCTATCGTCGTCGGCGTGGAATGCTGCGGGAAAGCAAACG
TGCAAAGACAATCTCCGGCCAACCTATCTCGCAACGGGGTGCTATCGCAGAGGAAGGAAG
TTGATCTGCACGCGTACAAGGGTGCACTGCTTTGTTGGGTGCCATTGTGGGGCATAATGT
GTAGTTAAGGCAGCAGTCGGCTGTCAGTCAGTGTCGAGCAACATAGTGTGAAGACTTCTT
GCGCGAGTTATTCAAATTCAAACTCAACTCTGAATGTGCGACCGGAGTTGCTGCAAAAGC
GTGCATAATTGAGCTGGTGTTCACGACATGTTCGAAAAACGGCCGGAATTAGTTGTGCGG
GTGCGATATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTCGATGTCG
GCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCCGATCGTG
CTGCCGAAGCCGCTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTACTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5052#0      ------------------------------------------------------------
consensus_5052#1      CCGGGTTCGGACCGTTTTTGTGTCGCTCGCTCGCTCGTTTCGTTCGTTTTTGCTGCAGGA 60
                                                                                  

consensus_5052#0      -----------------------------------CCGCCGATACAGTCCAAGTTCTACT 25
consensus_5052#1      TCCCTCACCTGCGACGTAAAGGGCCAATGTGTGGCCTAGTGTTCCAATTTCGCTCCTACC 120
                                                         *    * * ** *     * **** 

consensus_5052#0      AC---GTGCCCG-GCGAGCTG--AACGGCAGTGGGTTGGAGTGTCGCG--------ATTG 71
consensus_5052#1      GCTGAGGGCACACGAGAGTCGCTATCGTCGTCGGCGTGGAATGCTGCGGGAAAGCAAACG 180
                       *   * ** *  * ***  *  * ** *   **  **** **  ***        *  *

consensus_5052#0      CTC-----CAGTGCCGAGCTGATCGATCCCG-AGTTCGATCCCGTCGCCCGTGGGGAA-- 123
consensus_5052#1      TGCAAAGACAATCTCCGGCCAACCTATCTCGCAACGGGGTGCTATCGCAGAGGAAGGAAG 240
                        *     ** *  *  **  * * *** ** *    * * *  ****    *  * *  

consensus_5052#0      --GACCTGGAGGGTCAGAGTGTCGTACTGCTGCCCGAGGAGGAA--GATGCACTCGATGG 179
consensus_5052#1      TTGATCTGCACGCGTACAAGGGTGCACTGCTTTGTTGGGTGCCATTGTGGGGCATAATGT 300
                        ** *** * *   * *  *  * ******      ** *  *  *  *  *   *** 

consensus_5052#0      AGAG---AGCCAGCA--CCACCGTCAG-CAGCATC---CGATGGTGGGCGACGAGCGGCC 230
consensus_5052#1      GTAGTTAAGGCAGCAGTCGGCTGTCAGTCAGTGTCGAGCAACATAGTGTGAAGACTTCTT 360
                        **   ** *****  *  * ***** ***  **   * *    * * ** **      

consensus_5052#0      GAGCGAGCTG---GAGGTTCAGCTGAACGCCGAGGACGACGAGGACGAGGATGGATTCTA 287
consensus_5052#1      GCGCGAGTTATTCAAATTCAAACTCAACTCTGAATGTG----CGACCGGAGTTGCTGCAA 416
                      * ***** *     *  *  * ** *** * **    *     ***  *  * * * * *

consensus_5052#0      CACCGAACGATACGATACCGTTATGGACGAGGATAGCATCGGGGGTGATGAGCATGTCTA 347
consensus_5052#1      AAGCGTGCATAATTGAGCTGGTGTTCACGACAT--GTTCGAAAAACGGCCGGAATTAGTT 474
                       * **  *   *     * * * *  ****     *          *    * **   * 

consensus_5052#0      CAGCTCATACACGGATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTC 407
consensus_5052#1      GTGCGGGTGCG-ATATCTGGAAACGTCATCGACGGAGCAGCCAAGCTCGTGCGACAGCTC 533
                        **   * *    **********************************************

consensus_5052#0      GATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCC 467
consensus_5052#1      GATGTCGGCGCTGCGCCTGCACACGCCCGGCTTCGGCAAGAGCGCTTCCAGCCGGCGCCC 593
                      ************************************************************

consensus_5052#0      GATCGTCCTGCCGAAGCCGTTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTA 527
consensus_5052#1      GATCGTGCTGCCGAAGCCGCTGCCCCAGCTGGAGTTTCCCGGGCCGCCGTCGTACGAGTA 653
                      ****** ************ ****************************************

consensus_5052#0      CTACGAGCCGAGCTGCTGCTACATGCCGCTGCCACCGCCACCGCCGCCACCGCCTCCGCC 587
consensus_5052#1      CTACG------------------------------------------------------- 658
                      *****                                                       

consensus_5052#0      GGGACACTTCCATCACGCTCACGCTCATCATCATCATGGACATTCGGGGCTCCCGCTCGG 647
consensus_5052#1      ------------------------------------------------------------
                                                                                  

consensus_5052#0      ACCACCGCCGTCCGTCACCGGGGACGATCCTG 679
consensus_5052#1      --------------------------------