cluster # 5055

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Anopheles gambiae
cluster # 5055 cluster # 5055 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5055#0 length = 981 sequences # 3

consensus_5055#1 length = 667 sequences # 1

consensusID : consensus_5055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 981
fasta sequence

                              [CCGCCCACGCGTCCGCAAGATCGTCAGTCCGGTCATCCCGCAGCCGGGCGGCTGGAAGCGTGCCCACTGGCCGGCCAATGCGGGTGGGAGTGGGGCGGCCGGCAGTGCTGGGCGGAATCGCACCCGAACCTTTTCCACCACGTCTGTCACGGACGAACAGCATGGGGAGGATGGGACGATTGCGACCGGCGCAGACCGGAGTACGGAAGGGCAGGCACAAGAGAAGGCGCACAAAACCGAACGAACGGACGGGTTGGAGGATCATAAGAAGCAAGCGGGTGATGAGGGTGGTGCCGTTAAGGAGGAAGGGCGATCGAATGAAGCGAATGTGATGGGTACGTCCGCCGGAAGGATGGGTAGTGGCATCGGGTCGATTGAACGACCGTTAAGCTTGACGCAAGGGACGTCCCAGGGCACAGTTCCACCGTCACAGAGCTCATTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCGTTACTACGGTTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCGCAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGATGACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGGCAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTGCCGCGCACGGTTGTGCCCGGGGCGGGCAGACGAGGTCACCGGGAATCGTCGACGGTTGTTTCGGCCACCGTCACCAAGATGGAGGTAAGCGAGGAGTTGGCTACCAGTAAGGAGACGCTTCCGTTGCAGAGCGATCCGGCTCCAACTGCTGTAAGTGCACCTCAGCCATCGACTAGTCAAGAAGGAGGAGAATGCACGGAACCATCTGCTGCTACTCCTGTCGCTGTTCCGACACCACCAGCGAGCGTTGCCGAGACGGAAGATAACGTTTC]

[+] EMBL BM642221             [CCGCCCACGCGTCCGCAAGATCGTCAGTCCGGTCATCCCGCAGCCGGGCGGCTGGAAGCGTGCCCACTGGCCGGCCAATGCGGGTGGGAGTGGGGCGGCCGGCAGTGCTGGGCGGAATCGCACCCGAACCTTTTCCACCACGTCTGTCACGGACGAACAGCATGGGGAGGATGGGACGATTGCGACCGGCGCAGACCGGAGTACGGAAGGGCAGGCACAAGAGAAGGCGCACAAAACCGAACGAACGGACGGGTTGGAGGATCATAAGAAGCAAGCGGGTGATGAGGGTGGTGCCGTTAAGGAGGAAGGGCGATCGAATGAAGCGAATGTGATGGGTACGTCCGCCGGAAGGATGGGTAGTGGCATCGGGTCGATTGAACGACCGTTAAGCTTGACGCAAGGGACGTCCCAGGGCACAGTTCCACCGTCACAGAGCTCATTGGCTGCCACTAGCCGGTATCACTTCGGGAACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM612066             [                                                                                                                   ccgCGCACCCGAACCTTTTCCACCACGTCTGTCACGGACGAACAGCATGGGGAGGATGGGACGATTGCGACCGGCGCAGACCGGAGTACGGAAGGGCAGGCACAAGAGAAGGCGCACAAAACCGAACGAACGGACGGGTTGGAGGATCATAAGAAGCAAGCGGGTGATGAGGGTGGTGCCGTTAAGGAGGAAGGGCGATCGAATGAAGCGAATGTGATGGGTACGTCCGCCGGAAGGATGGGTAGTGGCATCGGGTCGATTGAACGACCGTTAAGCTTGACGCAAGGGACGTCCCAGGGCACAGTTCCACCGTCACAGAGCTCATTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCGTTACTACGGTTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCGCAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGATGACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGGCAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTGCCGCGCACGGTTGTGCCCGGGGCGGGCAGACGAGGTCACCGGGAATCGTCGACGGTTGTTTCGGCCACCGTCACCAAGATGGAGGT                                                                                                                                                                                          ]
[-] EMBL AGA285025            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CATCGACGTGCGGCTAAAGGTGTTCATGCGCAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGATGACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGGCAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTGCCGCGCACGGTTGTGCCCGGGGCGGGCAGACGAGGTCACCGGGAATCGTCGACGGTTGTTTCGGCCACCGTCACCAAGATGGAGGTAAGCGAGGAGTTGGCTACCAGTAAGGAGACGCTTCCGTTGCAGAGCGATCCGGCTCCAACTGCTGTAAGTGCACCTCAGCCATCGACTAGTCAAGAAGGAGGAGAATGCACGGAACCATCTGCTGCTACTCCTGTCGCTGTTCCGACACCACCAGCGAGCGTTGCCGAGACGGAAGATAACGTTTC]




>consensus_5055#0
CCGCCCACGCGTCCGCAAGATCGTCAGTCCGGTCATCCCGCAGCCGGGCGGCTGGAAGCG
TGCCCACTGGCCGGCCAATGCGGGTGGGAGTGGGGCGGCCGGCAGTGCTGGGCGGAATCG
CACCCGAACCTTTTCCACCACGTCTGTCACGGACGAACAGCATGGGGAGGATGGGACGAT
TGCGACCGGCGCAGACCGGAGTACGGAAGGGCAGGCACAAGAGAAGGCGCACAAAACCGA
ACGAACGGACGGGTTGGAGGATCATAAGAAGCAAGCGGGTGATGAGGGTGGTGCCGTTAA
GGAGGAAGGGCGATCGAATGAAGCGAATGTGATGGGTACGTCCGCCGGAAGGATGGGTAG
TGGCATCGGGTCGATTGAACGACCGTTAAGCTTGACGCAAGGGACGTCCCAGGGCACAGT
TCCACCGTCACAGAGCTCATTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCG
TTACTACGGTTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCG
CAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGAT
GACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGG
CAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTGCCGCGCACGGT
TGTGCCCGGGGCGGGCAGACGAGGTCACCGGGAATCGTCGACGGTTGTTTCGGCCACCGT
CACCAAGATGGAGGTAAGCGAGGAGTTGGCTACCAGTAAGGAGACGCTTCCGTTGCAGAG
CGATCCGGCTCCAACTGCTGTAAGTGCACCTCAGCCATCGACTAGTCAAGAAGGAGGAGA
ATGCACGGAACCATCTGCTGCTACTCCTGTCGCTGTTCCGACACCACCAGCGAGCGTTGC
CGAGACGGAAGATAACGTTTC

consensusID : consensus_5055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCACAGAGCTCACTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCGTTACTACGGCTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCGCAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGATGACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGGCAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTTCCACGCACGGTTGTGCCCGGGGCGGGCAGACGGGGCCACCGGGAATCGTCGACGGTCGTTTCGGCCACCGTCACCAAGATGGAGGTAAGCGAGGAGTTGGCTGCCAGTAAGGAGACGCTTCCGTTGCAGAGCGATCCGGCTCCAACTGCTGTAAGTGCACCACAGCCATCGACTAGTCAAGAAGGAGGAGGAGCCACGGAACCATCCGCTGCTACTCCTGTCGCTGTTTCGACACCACCAGCGAGTGTTGCTGAGACGGAAGATAACGTTTCAGTGGCACCGGTAGAAGAAACTGTCACGCAAACGGTCAACCCAGCAGCGGCAAGCAATGAAGATGCTGAAAAAGCACCACCTG]

[+] EMBL BM645279             [CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCACAGAGCTCACTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCGTTACTACGGCTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCGCAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGATGACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGGCAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTTCCACGCACGGTTGTGCCCGGGGCGGGCAGACGGGGCCACCGGGAATCGTCGACGGTCGTTTCGGCCACCGTCACCAAGATGGAGGTAAGCGAGGAGTTGGCTGCCAGTAAGGAGACGCTTCCGTTGCAGAGCGATCCGGCTCCAACTGCTGTAAGTGCACCACAGCCATCGACTAGTCAAGAAGGAGGAGGAGCCACGGAACCATCCGCTGCTACTCCTGTCGCTGTTTCGACACCACCAGCGAGTGTTGCTGAGACGGAAGATAACGTTTCAGTGGCACCGGTAGAAGAAACTGTCACGCAAACGGTCAACCCAGCAGCGGCAAGCAATGAAGATGCTGAAAAAGCACCACCTG]




>consensus_5055#1
CCGCGGACGCGTGGGCGGACGCGTGGGCCGTCACAGAGCTCACTGGCTGCCACTAGCCGG
TATCACTTCGGGAACTACGATCGTTACTACGGCTACCACAGCCTGAACGAGTTCATCGAC
GTGCGGCTAAAGGTGTTCATGCGCAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGAC
ATTGGGTGCAACGTGGGCCTGATGACGATCGCGATCGCCAAATCGCTGCACACCAAGTCG
GCCATCGGCATCGACGTGGACGGCAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAG
TACGTGCGGGTTCCACGCACGGTTGTGCCCGGGGCGGGCAGACGGGGCCACCGGGAATCG
TCGACGGTCGTTTCGGCCACCGTCACCAAGATGGAGGTAAGCGAGGAGTTGGCTGCCAGT
AAGGAGACGCTTCCGTTGCAGAGCGATCCGGCTCCAACTGCTGTAAGTGCACCACAGCCA
TCGACTAGTCAAGAAGGAGGAGGAGCCACGGAACCATCCGCTGCTACTCCTGTCGCTGTT
TCGACACCACCAGCGAGTGTTGCTGAGACGGAAGATAACGTTTCAGTGGCACCGGTAGAA
GAAACTGTCACGCAAACGGTCAACCCAGCAGCGGCAAGCAATGAAGATGCTGAAAAAGCA
CCACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5055#0      CCGCCCACGCGTCCGCAAGATCGTCAGTCCGGTCATCCCGCAGCCGGGCGGCTGGAAGCG 60
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TGCCCACTGGCCGGCCAATGCGGGTGGGAGTGGGGCGGCCGGCAGTGCTGGGCGGAATCG 120
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CACCCGAACCTTTTCCACCACGTCTGTCACGGACGAACAGCATGGGGAGGATGGGACGAT 180
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TGCGACCGGCGCAGACCGGAGTACGGAAGGGCAGGCACAAGAGAAGGCGCACAAAACCGA 240
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      ACGAACGGACGGGTTGGAGGATCATAAGAAGCAAGCGGGTGATGAGGGTGGTGCCGTTAA 300
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      GGAGGAAGGGCGATCGAATGAAGCGAATGTGATGGGTACGTCCGCCGGAAGGATGGGTAG 360
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TGGCATCGGGTCGATTGAACGACCGTTAAGCTTGACGCAAGGGACGTCCCAGGGCACAGT 420
consensus_5055#1      -------------------------------------CCGCGGACGCGTGGGCGGACGCG 23
                                                           *   *****     * * **   

consensus_5055#0      TCCACCGTCACAGAGCTCATTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCG 480
consensus_5055#1      TGGGCCGTCACAGAGCTCACTGGCTGCCACTAGCCGGTATCACTTCGGGAACTACGATCG 83
                      *   *************** ****************************************

consensus_5055#0      TTACTACGGTTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCG 540
consensus_5055#1      TTACTACGGCTACCACAGCCTGAACGAGTTCATCGACGTGCGGCTAAAGGTGTTCATGCG 143
                      ********* **************************************************

consensus_5055#0      CAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGAT 600
consensus_5055#1      CAATGCGTACCTCTTCCGGGACAAGGACGTGCTGGACATTGGGTGCAACGTGGGCCTGAT 203
                      ************************************************************

consensus_5055#0      GACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGG 660
consensus_5055#1      GACGATCGCGATCGCCAAATCGCTGCACACCAAGTCGGCCATCGGCATCGACGTGGACGG 263
                      ************************************************************

consensus_5055#0      CAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTGCCGCGCACGGT 720
consensus_5055#1      CAAGCTGATAGCGAAGGCGCGCAAAAACCTGGCCAAGTACGTGCGGGTTCCACGCACGGT 323
                      ************************************************ ** ********

consensus_5055#0      TGTGCCCGGGGCGGGCAGACGAGGTCACCGGGAATCGTCGACGGTTGTTTCGGCCACCGT 780
consensus_5055#1      TGTGCCCGGGGCGGGCAGACGGGGCCACCGGGAATCGTCGACGGTCGTTTCGGCCACCGT 383
                      ********************* ** ******************** **************

consensus_5055#0      CACCAAGATGGAGGTAAGCGAGGAGTTGGCTACCAGTAAGGAGACGCTTCCGTTGCAGAG 840
consensus_5055#1      CACCAAGATGGAGGTAAGCGAGGAGTTGGCTGCCAGTAAGGAGACGCTTCCGTTGCAGAG 443
                      ******************************* ****************************

consensus_5055#0      CGATCCGGCTCCAACTGCTGTAAGTGCACCTCAGCCATCGACTAGTCAAGAAGGAGGAGA 900
consensus_5055#1      CGATCCGGCTCCAACTGCTGTAAGTGCACCACAGCCATCGACTAGTCAAGAAGGAGGAGG 503
                      ****************************** **************************** 

consensus_5055#0      ATGCACGGAACCATCTGCTGCTACTCCTGTCGCTGTTCCGACACCACCAGCGAGCGTTGC 960
consensus_5055#1      AGCCACGGAACCATCCGCTGCTACTCCTGTCGCTGTTTCGACACCACCAGCGAGTGTTGC 563
                      *  ************ ********************* **************** *****

consensus_5055#0      CGAGACGGAAGATAACGTTTC--------------------------------------- 981
consensus_5055#1      TGAGACGGAAGATAACGTTTCAGTGGCACCGGTAGAAGAAACTGTCACGCAAACGGTCAA 623
                       ********************                                       

consensus_5055#0      --------------------------------------------
consensus_5055#1      CCCAGCAGCGGCAAGCAATGAAGATGCTGAAAAAGCACCACCTG 667