cluster # 5058

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Anopheles gambiae
cluster # 5058 cluster # 5058 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5058#0 length = 709 sequences # 2

consensus_5058#1 length = 648 sequences # 2

consensusID : consensus_5058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence

                              [CCGCAATGTTTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAAAAAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTAAAGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGGTGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGAAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTGCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGTGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAAATGGAGCTGTCGCACAGTCTCACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGACATCAAGGGCTGCCAGAAAAAGCTGGTCGAGCAGCTGACGCAACATATCCAGGGGGGCCCGGGGCCGCCCACGCGCA]

[+] EMBL BM597982             [CCGCAATGTTTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAAAAAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTAAAGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGGTGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGAAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTGCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGTGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAAATGGAGCTGTCGCACAGTCTCACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGACATCAAGGGCTGCCAGAAAAAGCTGGTCGAGCAGCTGACGCAACATATCCAGGGGGGC                   ]
[+] EMBL AGA285241            [                                                                                                                                                                                                                                                                                                                                         AGCTGGAGTTTGGTGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAG AATGGAGCTGTCGCACAGTCTCACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGACATCAAGGGCTGCCAGAAAAAGCTGGTCGAGCAGCTGACGCAACATATCCAGGGGGCGCCGGGGCCGCCCACGCGCA]




>consensus_5058#0
CCGCAATGTTTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAAAAAATAGTCACTTTTTCC
CCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTAAAGAGCTCGGTTCCATTC
CATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGGTGGTGCAAATTCAGCAAA
CTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGAAGCGAAAGCCGACGAAG
AAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTGCGCGCGTGTGTGTGTGC
TGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGTGAAAATTATGTTGCAAG
AGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGC
TTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGG
AGGCGGATCTAAGCGCCAGAAATGGAGCTGTCGCACAGTCTCACGCTGAACGAGGCCGCC
CTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGAATGGTTGCGCTTCCTG
GACAAGGTGCTGGTCGCGGCCCAAAAGTCCGACATCAAGGGCTGCCAGAAAAAGCTGGTC
GAGCAGCTGACGCAACATATCCAGGGGGGCCCGGGGCCGCCCACGCGCA

consensusID : consensus_5058#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 648
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAAAAAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTAAAGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAA-GGTGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGAAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTGCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGTGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAATGGAGCTGTCGCACAGTCTCACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGA]

[+] EMBL BM640983             [CCGCGGACGCGTGGGCGGACGCGTGGGTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAAAAAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTAAAGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAA GGTGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGAAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTGCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGTGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAATGGAGCTGTCGCACAGTCTCACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGA]
[+] EMBL BM607369             [            ccGCGGACGCGTGGG     AAAAGCCACAGTCGAAGCAGTAGCGAAAAAATAGTCACCTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTACCTAAAGAGCACGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGGGTGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGAAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTGCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGTGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTTAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCAGGAAGAGGAGGAAGCGGAGGCGGAACTAAGCGCCAGAATGGAGCTGTCGCACAGTCTCACGCTGA                                                                                                       ]




>consensus_5058#1
CCGCGGACGCGTGGGCGGACGCGTGGGTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAAA
AAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTAA
AGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGGT
GGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAGA
AGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGTG
CGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGGT
GAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGTT
AAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGCA
GGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAATGGAGCTGTCGCACAGTCTCAC
GCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTCGA
ATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5058#0      ------------------CCGCAATGTTTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAA 42
consensus_5058#1      CCGCGGACGCGTGGGCGGACGCG-TGGGTTGGAAAAAGCCACAGTCGAAGCAGTAGCGAA 59
                                         ***  **  ********************************

consensus_5058#0      AAAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTA 102
consensus_5058#1      AAAATAGTCACTTTTTCCCCCAAAAATGGGAGTTGTGAAATGTGTCGAAGTCAGTTCCTA 119
                      ************************************************************

consensus_5058#0      AAGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGG 162
consensus_5058#1      AAGAGCTCGGTTCCATTCCATCGCGATACGTGTGCAGCAGCGTGCACGGTGCAGTGAAGG 179
                      ************************************************************

consensus_5058#0      TGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAG 222
consensus_5058#1      TGGTGCAAATTCAGCAAACTGTGTGCATCGTGTCACCATCATCACCCAGGCAGGCAGAAG 239
                      ************************************************************

consensus_5058#0      AAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGT 282
consensus_5058#1      AAGCGAAAGCCGACGAAGAAGAAGAAGCGCACGCATTTTTTCTACCTCCAGTCCCCGTGT 299
                      ************************************************************

consensus_5058#0      GCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGG 342
consensus_5058#1      GCGCGCGTGTGTGTGTGCTGGAGCTGTGGCAGAGTGTTGCTAAAATCAGCTGGAGTTTGG 359
                      ************************************************************

consensus_5058#0      TGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGT 402
consensus_5058#1      TGAAAATTATGTTGCAAGAGTAGTGAAACCACTATATTCGCGACGCGGCGACACAGTCGT 419
                      ************************************************************

consensus_5058#0      TAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGC 462
consensus_5058#1      TAAAACACTTCCCGCAGCTTCACCCGTTCGACAGCAGCAGCCCCGACGGCGCAGAAGCGC 479
                      ************************************************************

consensus_5058#0      AGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAAATGGAGCTGTCGCACAGTCTC 522
consensus_5058#1      AGGAAGAGGAGGAAGCGGAGGCGGATCTAAGCGCCAGAA-TGGAGCTGTCGCACAGTCTC 538
                      *************************************** ********************

consensus_5058#0      ACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTC 582
consensus_5058#1      ACGCTGAACGAGGCCGCCCTCAGCCAGCTGCCGGAGCAGAAGCGGCCCGTATTCATCTTC 598
                      ************************************************************

consensus_5058#0      GAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGACATCAAGGGC 642
consensus_5058#1      GAATGGTTGCGCTTCCTGGACAAGGTGCTGGTCGCGGCCCAAAAGTCCGA---------- 648
                      **************************************************          

consensus_5058#0      TGCCAGAAAAAGCTGGTCGAGCAGCTGACGCAACATATCCAGGGGGGCCCGGGGCCGCCC 702
consensus_5058#1      ------------------------------------------------------------
                                                                                  

consensus_5058#0      ACGCGCA 709
consensus_5058#1      -------