These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5059#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1300 fasta sequence [CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCGGGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACTTGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGGTGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGCACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCGTGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCAAGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGGAGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAAGTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACCTTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAACGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC] [+] EMBL BM620134 [CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCGGGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACTTGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGGTGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGCACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCGTGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCAAGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGGAGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAAGTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACCTTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAACGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCG ] [+] EMBL BM624905 [ ccgCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC] consensusID : consensus_5059#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [CCGCCCACGCGTCCGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTCAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGGTTGGAAGGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCGACCATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGACGATGTCCA] [+] EMBL BM614046 [CCGCCCACGCGTCCGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTCAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGGTTGGAAGGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCGACCATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGACGATGTCCA] [+] EMBL AGA285275 [ TCACGTACTGGACGCGGCAGGAAGAGCTGCGGTTGGTGAACGAACGAGCCGTTACCACCACGAAGGTCGATTTCCTCTACACGTACGGCGTGATCATTATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAACTGCTGCCGAAGGCGATGATCGAAGCCATTCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5059#0 CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCG 60 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 GGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACT 120 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 TGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGG 180 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 TGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGC 240 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 ACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCG 300 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 TGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCA 360 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 AGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGG 420 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 AGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAA 480 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 GTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACC 540 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 TTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAA 600 consensus_5059#1 ------------------------------------------------------------ consensus_5059#0 CGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGT 660 consensus_5059#1 ---------------CCGCCCACGCGTC--CGCTACTGTTCACCTTCCTGATGCTGCTGT 43 * * *** * ***************************** consensus_5059#0 TCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAG 720 consensus_5059#1 TCTCGCAGGCGATCGTCAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAG 103 **************** ******************************************* consensus_5059#0 AGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCT 780 consensus_5059#1 AGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGT 163 ********************************************************** * consensus_5059#0 ACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCA 840 consensus_5059#1 ACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCA 223 ************************************************************ consensus_5059#0 ACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCG 900 consensus_5059#1 ACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCG 283 ************************************************************ consensus_5059#0 CACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGG 960 consensus_5059#1 CACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGG 343 ************************************************************ consensus_5059#0 ATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGC 1020 consensus_5059#1 ATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGC 403 ************************************************************ consensus_5059#0 TGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCAC 1080 consensus_5059#1 TGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCAC 463 ************************************************************ consensus_5059#0 TGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAG 1140 consensus_5059#1 TGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAG 523 ************************************************************ consensus_5059#0 ACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACAC 1200 consensus_5059#1 ACATGAAGCGGTTGGAAGGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACAC 583 ********** ************** ********************************** consensus_5059#0 TCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCG 1260 consensus_5059#1 TCTCCGGGCTGTCGACCATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCG 643 ************* ******************** ***** ******************* consensus_5059#0 ACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC-------- 1300 consensus_5059#1 ACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGACGATGTCCA 691 **************************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||