cluster # 5059

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Anopheles gambiae
cluster # 5059 cluster # 5059 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5059#0 length = 1300 sequences # 2

consensus_5059#1 length = 691 sequences # 2

consensusID : consensus_5059#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1300
fasta sequence

                              [CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCGGGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACTTGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGGTGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGCACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCGTGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCAAGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGGAGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAAGTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACCTTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAACGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC]

[+] EMBL BM620134             [CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCGGGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACTTGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGGTGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGCACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCGTGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCAAGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGGAGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAAGTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACCTTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAACGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM624905             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC]




>consensus_5059#0
CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCG
GGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACT
TGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGG
TGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGC
ACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCG
TGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCA
AGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGG
AGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAA
GTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACC
TTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAA
CGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGT
TCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAG
AGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCT
ACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCA
ACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCG
CACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGG
ATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGC
TGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCAC
TGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAG
ACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACAC
TCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCG
ACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC

consensusID : consensus_5059#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 691
fasta sequence

                              [CCGCCCACGCGTCCGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTCAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGGTTGGAAGGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCGACCATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGACGATGTCCA]

[+] EMBL BM614046             [CCGCCCACGCGTCCGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTCAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGTACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGGTTGGAAGGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCGACCATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGACGATGTCCA]
[+] EMBL AGA285275            [                                                                               TCACGTACTGGACGCGGCAGGAAGAGCTGCGGTTGGTGAACGAACGAGCCGTTACCACCACGAAGGTCGATTTCCTCTACACGTACGGCGTGATCATTATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGACGAACTGCTGCCGAAGGCGATGATCGAAGCCATTCAGATACTGCTGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCT                                                                                                                                                                                      ]




>consensus_5059#1
CCGCCCACGCGTCCGCTACTGTTCACCTTCCTGATGCTGCTGTTCTCGCAGGCGATCGTC
AGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAGAGCTGCGGCTGGTGAAC
GAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGTACGGCGTGATCATCATC
GGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCAACATCTGCATGAAAGCG
TCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCGCACCGATGCGCTTCTTC
GACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGGATATGGGCGCGATCGAC
GAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGCTGGTGATGACGGGTATA
CTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCACTGCTGGGAGCCGTTTTG
CTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAGACATGAAGCGGTTGGAA
GGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACACTCTCCGGGCTGTCGACC
ATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCGACGATCTGCAGAACGTT
CACTCGGCCGTGTGGCAGCTGACGATGTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5059#0      CCGAGCAGCTGCCGGATGGGGACAAAACGGTGGTGGGTGAGCGGGGCACTTCCCTGTCCG 60
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      GGGGTCAGCGTGCTCGCGTCAGTTTGGCACGGGCGGTGTACAACAACGCCTCCATCTACT 120
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      TGCTGGACGATCCGCTCAGCGCGGTCGATGCACACGTCGGCAAGCATCTGTTCGATGAGG 180
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      TGATCGGTCCGCGCGGCTATCTGGCACAGAAGCAGAAGGCTACGCGGGTGCTGGTGACGC 240
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      ACCAGGTACACTTCCTGAAGGAAGCCGACTGGATCGTGATCATCGAGGGAGGGAAAATCG 300
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      TGACCCAGGGCACGTACACGGAGCTGGCGAACGGCAAGGTTGACTTTGGCAAGCTGCTCA 360
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      AGTCGGGCGAGCCGGAGAAGGGCGGGGCGGACGATAGTGTACTGGCGGCGGACATTCCGG 420
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      AGGATGAGATTCCCTTCATTGACGGCGTTACGCTCGATGGGTATAAGCTGCTGAAGGGAA 480
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      GTACCGTTTCGTTGCGTGGCGTTACACCCAGCTCCTGTGCGTCAAGTGTGGCCGACAACC 540
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      TTGGCCGCCAGGTAGCGGAGGACCAGGCAGAGGGTACCATTTCGTGGCGCGTTTGGGCAA 600
consensus_5059#1      ------------------------------------------------------------
                                                                                  

consensus_5059#0      CGTACTTCCTCTCCGGTGGCAACGTGCTGATGCTACTGTTCACCTTCCTGATGCTGCTGT 660
consensus_5059#1      ---------------CCGCCCACGCGTC--CGCTACTGTTCACCTTCCTGATGCTGCTGT 43
                                       * * *** *     *****************************

consensus_5059#0      TCTCGCAGGCGATCGTTAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAG 720
consensus_5059#1      TCTCGCAGGCGATCGTCAGCGGATCGGACTACTTCGTCACGTACTGGACGCGGCAGGAAG 103
                      **************** *******************************************

consensus_5059#0      AGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACCT 780
consensus_5059#1      AGCTGCGGCTGGTGAACGAACGGGCCGTTACCACCACGACGGTCGATTTCCTCTACACGT 163
                      ********************************************************** *

consensus_5059#0      ACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCA 840
consensus_5059#1      ACGGCGTGATCATCATCGGCGTGGTCGTGTTCACCATCTTCCGGGGGTATCTGTTTTTCA 223
                      ************************************************************

consensus_5059#0      ACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCG 900
consensus_5059#1      ACATCTGCATGAAAGCGTCCCGCAATCTGCACGACCGCATGTTCGCCCGCATGCTGACCG 283
                      ************************************************************

consensus_5059#0      CACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGG 960
consensus_5059#1      CACCGATGCGCTTCTTCGACACGAACCCGTCCGGGCGGATCTTGAACCGCTTCTCGAAGG 343
                      ************************************************************

consensus_5059#0      ATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGC 1020
consensus_5059#1      ATATGGGCGCGATCGACGAGCTGCTGCCGAAGGCGATGATCGAAGCCATCCAGATACTGC 403
                      ************************************************************

consensus_5059#0      TGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCAC 1080
consensus_5059#1      TGGTGATGACGGGTATACTGACGATGATTACGATCGTGAACCCGCTGCTGCTGCTGCCAC 463
                      ************************************************************

consensus_5059#0      TGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAG 1140
consensus_5059#1      TGCTGGGAGCCGTTTTGCTGTACGCGATCGCACTCAAGCTGTATCTGCGCCCGATTCAAG 523
                      ************************************************************

consensus_5059#0      ACATGAAGCGTTTGGAAGGCATCACTCGTAGTCCCGTGTTCTCCCACCTGTCCGCAACAC 1200
consensus_5059#1      ACATGAAGCGGTTGGAAGGCATCACACGTAGTCCCGTGTTCTCCCACCTGTCCGCAACAC 583
                      ********** ************** **********************************

consensus_5059#0      TCTCCGGGCTGTCAACCATCCGTGCGAGCGGTGTGCAGGAAAAGATTCGCGAAGAGTTCG 1260
consensus_5059#1      TCTCCGGGCTGTCGACCATCCGTGCGAGCGGTGTTCAGGAGAAGATTCGCGAAGAGTTCG 643
                      ************* ******************** ***** *******************

consensus_5059#0      ACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGAC-------- 1300
consensus_5059#1      ACGATCTGCAGAACGTTCACTCGGCCGTGTGGCAGCTGACGATGTCCA 691
                      ****************************************