These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [NAGGTACTTACTTGATCCGACCTGGTCAGGNAACAATTNGAACGTGCAGTTCGTGCTGCGCGTCCCCCGTCTGCAACACCGATCGTACCTGGTCGGACTACGACAGATCCTGTCCCANCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTACCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGGCGCTGAGCGGANAGCAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGAGTCAAGNAGACNGCAATTATGNCGCCCGCTATATATCCNGAAAGTTGCTACCGNTGACATTGCTTGCCTGGATATGAAGTTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATACTAGACTTGGCGTNAACCGGCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCGATGAACCAGAGGCCCAAGAATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAGAAGAGGTTTGGTTGGAATTGGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGAGGTCGGTTATGGCCCGGAGAGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC] [+] EMBL AL695527 [NAGGTACTTACTTGATCCGACCTGGTCAGGNAACAATTNGAACGTGCAGTTCGTGCTGCGCGTCCCCCGTCTGCAACACCGATCGTACCTGGTCGGACTACGACAGATCCTGTCCCANCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTACCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGGCGCTGAGCGGANAGCAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGAGTCAAGNAGACNGCAATTATGNCGCCCGCTATATATCCNGAAAGTTGCTACCGNTGACATTGCTTGCCTGGATATGAAGTTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATACTAGACTTGGCGTNAACCGGCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCGATGAACCAGAGGCCCAAGAATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAGAAGAGGTTTGGTTGGAATTGGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGAGGTCGGTTATGGCCCGGAGAGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC] consensusID : consensus_5071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 635 fasta sequence [CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCACCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTGCTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTGCCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGCGGTGTGATGCAACCGGGAGGAGGTCCGGGTGTGCCAGGCGGTCCCGGTGGACCGATGGGAGGACAGATCGGTGGTCCCACGCCGCAGGTAGTGCCGCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCGCCGATGCAACAGATGGGGCGGCGGTGGGCCACAGC] [+] EMBL BM615459 [CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCACCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTGCTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTGCCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGCGGTGTGATGCAACCGGGAGGAGGTCCGGGTGTGCCAGGCGGTCCC ] [+] EMBL BX620891 [ CTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCACCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTGCTGCCGGATGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTGCCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGTGGTGTGATGCAACCAGGAGGAGGTCCGGGTGTGCCGGGCGGTCCCGGTGGACCGATGGGAGGACAGATCGGTGGTCCCACGCCGCAGGTAGTGCCGCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCGCCGATGCAACAGATGGGGCGGCGGTGGGCCACAGC] consensusID : consensus_5071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCGAGGTTAGCTGCAGCGTATATTCACCAGGAAGAAAGCTAATGGCAATTACCTCGAACGAGCCGGGCGTGGTCGTATTCAAAGCGGACTGTCTGCAGTACCAAGTCTTCCTCAACCCGAACCACATAGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGGCCGATGATGGACGGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCAGTTCTTCGACACCGGGTAGCCGCCCGCCTATCGGCCGCCGTCATGACGAGCTTCACGCGCATGCGTCAACTGCCGGCCAGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTNCCCCCGTCTGNCNNAGCGACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGGCGCGTCCGTACTCTGCNCCAACANTGGCACGTGGAAGGACGCGGTCACGATGCGTCCTGGCGATGGTGTACGANGTGNNCATTGAACCACNCGTACGCTGGCCGCAGCGGCGCGAACCGATGCC] [+] EMBL AL692118 [CCGAGGTTAGCTGCAGCGTATATTCACCAGGAAGAAAGCTAATGGCAATTACCTCGAACGAGCCGGGCGTGGTCGTATTCAAAGCGGACTGTCTGCAGTACCAAGTCTTCCTCAACCCGAACCACATAGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGGCCGATGATGGACGGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCAGTTCTTCGACACCGGGTAGCCGCCCGCCTATCGGCCGCCGTCATGACGAGCTTCACGCGCATGCGTCAACTGCCGGCCAGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTNCCCCCGTCTGNCNNAGCGACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGGCGCGTCCGTACTCTGCNCCAACANTGGCACGTGGAAGGACGCGGTCACGATGCGTCCTGGCGATGGTGTACGANGTGNNCATTGAACCACNCGTACGCTGGCCGCAGCGGCGCGAACCGATGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5071#1 CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAG 60 consensus_5071#2 CCGAGGTTAG----CTGCAGCGTA--TATTCACCAGGAAGAAAGCTAATGGCAATTACCT 54 consensus_5071#0 ----------------------NAGGTACTTACTT-GATCCGACCTG---------GTCA 28 * * * ** * consensus_5071#1 GGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTA 120 consensus_5071#2 CG-AACGAGCCGGGCGTGG---TCGTATT-CAAAGCGGACTGTCTGCAGTACCAAGTCTT 109 consensus_5071#0 GGNAACAATTNGAACGTGCAGTTCGTGCTGCGCGTCCC-CCGTCTGCAACACCGATCGTA 87 * *** * * **** **** * * * * ******* *** * * consensus_5071#1 C--CGGTCGGCACTACGA-CGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAG 177 consensus_5071#2 CCTCAACCCGAACCACAT-AGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGG 168 consensus_5071#0 C--CTGGTCGGACTACGACAGATCCTGTCCCANCGGCAGAAGATACTGTTCTTCATCCAG 145 * * * ** ** * * *** * * ** * * * * ** * consensus_5071#1 ATTACGCGCGTCCCGTACCTGCCCAACA-TGGAGTGGAAGGAC--GCGGTCAC--GATGC 232 consensus_5071#2 CCGATGATGGACGGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCA 228 consensus_5071#0 ATTACGCGCGTACCGTACCTGCCCAACA-TGGAGTGGAAGGAC--GCGGTCAC--GATGC 200 * * * * * ** * ** *** * ***** ** * ** ** consensus_5071#1 TCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTG-GC------CGAGCGG 285 consensus_5071#2 GTTCTTCGACACCGGGTAGC-CGCCCGCCTATCGGCCGCCGTCATGA------CGAGCTT 281 consensus_5071#0 TCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGGCGCTGAGCGGANAG 260 *** * * * * * * ** ** * ** consensus_5071#1 CGCGAACCGATGCCA--CCGCAG--CTGACCAG-TGCGGTCA-GCGCGCATTTGCGCC-- 337 consensus_5071#2 CACGCGC--ATGCGT--CAACTG--CCGGCCAGGTGCTGAAG-GACTTCATCCAAATCAT 334 consensus_5071#0 CAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGAGTCAAGNAGACNGCAATTAT 320 * * **** * * * * *** * * consensus_5071#1 GCTTTTCCGAGTGCT--CCGT--GCTGCTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTG 393 consensus_5071#2 GCGCCTCGATCTGATGCCCGA--GCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTG 392 consensus_5071#0 GNCGCCCGCTATATATCCNGAAAGTTGCTACCGN-TGACATTGCTTGCCTGGATATGAAG 379 * * * * * * ** * * * * * * * consensus_5071#1 CACGATCTGCTGCTAAC-GCTAACG--CTGCCGAACG--AACCG-CCCGCACCGGGCCAG 447 consensus_5071#2 CTGCGCGTNCCCCCGTCTGNCNNAG--CGACCGATCG--TACCGGTCGGCACTACGAC-G 447 consensus_5071#0 TTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATACTAGACTTGGCGTNAACCG 439 * * * * ** ** * * * * consensus_5071#1 ATGCAGATGCAGC-AGCT--CGGCGGTGTGATGCAACCGGGAGGAGGTCCGGGTGTGCCA 504 consensus_5071#2 ATCCTGTCCCACC-GGCAGAAGATACTGTTCTTCATCCAGATTACGGCGCGTCCGTACTC 506 consensus_5071#0 GCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCGATGAACCAGAGGCCCAAGA 499 * ** * * ** consensus_5071#1 GGCGGTCCCGGTGGACCGATGG-GAGGACAGATCGGTGGTCCCACGCCGCAGGTAGTGCC 563 consensus_5071#2 TGCNCCAACANTGGCACG-TGG-AAGGACG---CGGTCACGATGCGTC-CTGGCGATGGT 560 consensus_5071#0 ATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAGAAGAGGTTTGGTTGGAATT 559 * * ** * * consensus_5071#1 GCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCGCCGATGCAACAGATGGGGCGGCG 623 consensus_5071#2 GTACGANGTGNNCA--TTGAACCACNCG-TACGCTGGCCGCAGCGGCG--CGAACCGATG 615 consensus_5071#0 GGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGAGGTCGGTTATGGCCCGGAG 619 * * * * * * ** * * ** * consensus_5071#1 GTGGGCCACAGC------------------------- 635 consensus_5071#2 CC----------------------------------- 617 consensus_5071#0 AGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC 656 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||