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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence
[ACATGGCAGAAAGCAGGCCCACCAGCCACCGCCAGCGGAAGGTTTGCTGCAGCTTGCTTGATCTCGTCGATCTGTACGCTGAACGAATTCCCTGCCAATCTGTACGCACTGCGGCTGGTGGTGTTTAACTGACAATCTTCCTTGTGTTGCTGGTTGCTGCGGCTGTACTGGGGAAACATCTCACCCCGCAAGCCTGTACTGCTGCTGGTCATTGCTTGCTCGGTATCTGCTGAGTGCTGTGCACTGGCTGAAACGCTGGACGACTTCATTGCCACTGGAATGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCTGTGTGCTGCTGAAATCAACCAGCACGGACATGTGCTGGCCTGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTTGTTCTGATCAACCGAACTGCACCACCTGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCTGTCCTGCTGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGGATAACAATAAAATGGTTCGGTGAACTGGTACTATCCCTAACCTTAAAAAAAANCACANCAAAAAAACAAAAAAGACANACACANACNAGTNNACACCAGTGANCCATCGACAACACAAAACACNGACACAGANCAGACAACAAGCACAGGAGCCACTATTGTTTANAGCGCCTGGAAACNGCTTTATTTCCCCTTTTAAGGTNGAGGGGNGATTACAGGTTAACAGCGCTTANGGNGACCTTGGCCGGGCCNGTTTTACGCAANCCGNTCGTATCGACCTTGGCAGAAAAANNCCCCTT]
[+] EMBL AL931442 [ACATGGCAGAAAGCAGGCCCACCAGCCACCGCCAGCGGAAGGTTTGCTGCAGCTTGCTTGATCTCGTCGATCTGTACGCTGAACGAATTCCCTGCCAATCTGTACGCACTGCGGCTGGTGGTGTTTAACTGACAATCTTCCTTGTGTTGCTGGTTGCTGCGGCTGTACTGGGGAAACATCTCACCCCGCAAGCCTGTACTGCTGCTGGTCATTGCTTGCTCGGTATCTGCTGAGTGCTGTGCACTGGCTGAAACGCTGGACGACTTCATTGCCACTGGAATGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCTGTGTGCTGCTGAAATCAACCAGCACGGACATGTGCTGGCCTGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTTGTTCTGATCAACCGAACTGCACCACCTGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCTGTCCTGCTGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGGATAACAATAAAATGGTTCGGTGAACTGGTACTATCCCTAACCTTAAAAAAAANCACANCAAAAAAACAAAAAAGACANACACANACNAGTNNACACCAGTGANCCATCGACAACACAAAACACNGACACAGANCAGACAACAAGCACAGGAGCCACTATTGTTTANAGCGCCTGGAAACNGCTTTATTTCCCCTTTTAAGGTNGAGGGGNGATTACAGGTTAACAGCGCTTANGGNGACCTTGGCCGGGCCNGTTTTACGCAANCCGNTCGTATCGACCTTGGCAGAAAAANNCCCCTT]
consensusID : consensus_5076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[GATNGCCCAGGGTTAATGCGTAGCAGCTGTTCGAGATCTACTACAGCTGTTCGAAATCGCACGACATNGCAGAAAGCAGGCCACCAGCACCGCAGCGGAAGGTTTGCGCAGCTTGCTTGATCTCGTCGATCGTACGCTGAACGAATTCCCTGCAATCTGTACGCACTGCGTGCTGGTGGTGTTTAACGACAATCTTCCTATGGTATGCGGTTGCGCGGCTGTACCTGGGGAAACATCTCANCCCGAAAGCCGTACTGNTGCTGGTCATTTGCTGCTCGGGTATCGCGACGCGGTGCNCGGCTGAACACGCTTGGACGANTTCATTTGCGCACCGNGAAAGCATCTGGCTTACNAAAGCAACGGTATCCNTGAAACCCTTGTCGGACGTNTAGNGCACTAGAAATCCAACCAGCAACTNNGGGACAAGGTTGGCGGGCTNGTGAACCTCGTCATTCCGCCACACTGGCGCAAACCNGGNNNGNTTCCTCTGTGGGCACGNGCCGTGNGTATACCCCCTTNTGGCCTGGGTGCACAACCTGGTGGTTACGCGACATTCCCNAAAACNCGGCAANAANCAGACGACACCCAAACCCCGGTGACAATAATCCCAGGCTAGTGTTGNCTGGTGAGCGCCAGGATGTGGCCTGCGGANNGACANACCGTCACNTGNCTAACCAGCNTTAGTGTGCCGCTGTGTGTNAAAGCCCGNTTGTGCCCCCTTGCTGGNANNAA]
[+] EMBL AL695907 [GATNGCCCAGGGTTAATGCGTAGCAGCTGTTCGAGATCTACTACAGCTGTTCGAAATCGCACGACATNGCAGAAAGCAGGCCACCAGCACCGCAGCGGAAGGTTTGCGCAGCTTGCTTGATCTCGTCGATCGTACGCTGAACGAATTCCCTGCAATCTGTACGCACTGCGTGCTGGTGGTGTTTAACGACAATCTTCCTATGGTATGCGGTTGCGCGGCTGTACCTGGGGAAACATCTCANCCCGAAAGCCGTACTGNTGCTGGTCATTTGCTGCTCGGGTATCGCGACGCGGTGCNCGGCTGAACACGCTTGGACGANTTCATTTGCGCACCGNGAAAGCATCTGGCTTACNAAAGCAACGGTATCCNTGAAACCCTTGTCGGACGTNTAGNGCACTAGAAATCCAACCAGCAACTNNGGGACAAGGTTGGCGGGCTNGTGAACCTCGTCATTCCGCCACACTGGCGCAAACCNGGNNNGNTTCCTCTGTGGGCACGNGCCGTGNGTATACCCCCTTNTGGCCTGGGTGCACAACCTGGTGGTTACGCGACATTCCCNAAAACNCGGCAANAANCAGACGACACCCAAACCCCGGTGACAATAATCCCAGGCTAGTGTTGNCTGGTGAGCGCCAGGATGTGGCCTGCGGANNGACANACCGTCACNTGNCTAACCAGCNTTAGTGTGCCGCTGTGTGTNAAAGCCCGNTTGTGCCCCCTTGCTGGNANNAA]
consensusID : consensus_5076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[CGGTATCCCGAGGCGTTCACGGCTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTGTTCGATCAACCGAACGCACCACCCGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCCTGCGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGCAAGCACGTTGGCTATACTGCAGATGAAGGCATAACAATAAAACTGCGCTANANCTCAGCGCTGCATGTACTTATTCCCTAAAACAACAACACACACNCACNCCACACACACTCCTCACNAACACCCNCAGAGACCCCGCCAAACGACCTCTAATTCCCCATATACTA]
[+] EMBL AL692183 [CGGTATCCCGAGGCGTTCACGGCTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTGTATCGCAATGCACTGCTCTGGCGGCTGTACCTGCGGGAACTGTTCGATCAACCGAACGCACCACCCGGATACAGTGTGCTGGAGCAGTGCCGGAGAACGCTGTACGTGGCACTGGAAGCGTGCCCGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCCTGCGCACCGCAGGAACTGTCCCAGCTGCTTGATTTGATGATGGAAAAGCAGCTCCGGGTGCACGCGATCCCGGCAAGCACGTTGGCTATACTGCAGATGAAGGCATAACAATAAAACTGCGCTANANCTCAGCGCTGCATGTACTTATTCCCTAAAACAACAACACACACNCACNCCACACACACTCCTCACNAACACCCNCAGAGACCCCGCCAAACGACCTCTAATTCCCCATATACTA]
consensusID : consensus_5076#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[AATCCCCCGAGGTTAGTCATTGCTGCTCGCGTATCCCGAGGCGTTCACGGTTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCTGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTTGTATCTGCAATGCACTAGGTCTGGCGGCTGTACCTGGCGGGAACTAGTTCGATACAAACGAACGCACACAACCGGATACAGTGTGCTGGAGGCAGNTGCCGGAGAACGCTGTACGTTGGCACTGGAAAGCGTGCCCGGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCTGCGCACCGNAGGAACTGTCCCAGAGCTGCTATGATTTTGCGTGATGGCANAAGCAGCTACCGCGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGCGATAACAAGTAAAATGGTTAATCGGTGATGTATATCCTAAAAACAACAACACACAAACAAAT]
[+] EMBL AL713810 [AATCCCCCGAGGTTAGTCATTGCTGCTCGCGTATCCCGAGGCGTTCACGGTTGAAACGCTGGACGACTTCATTGCCACGGAAGCATCTGCCTTACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTGAAATCAACCAGCACGGACAGTGCGGCCGTACTTGTATCTGCAATGCACTAGGTCTGGCGGCTGTACCTGGCGGGAACTAGTTCGATACAAACGAACGCACACAACCGGATACAGTGTGCTGGAGGCAGNTGCCGGAGAACGCTGTACGTTGGCACTGGAAAGCGTGCCCGGTGGAATAAGGCGCTCTACCTCGATGGGGCGTCTGCGCACCGNAGGAACTGTCCCAGAGCTGCTATGATTTTGCGTGATGGCANAAGCAGCTACCGCGGTGCACGCGATCCCGGAAGAGTTGGCTATACTGCGTGAAGCGATAACAAGTAAAATGGTTAATCGGTGATGTATATCCTAAAAACAACAACACACAAACAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5076#2 ------------------------------------------------------------
consensus_5076#3 ------------------------------------------------------------
consensus_5076#0 ACATGGCAGAAAGCAGGCCCACCAGCCACCGCCAGCGGAAGGTTTGCTGCAGCTTGCTTG 60
consensus_5076#1 ------------------------------------------------------------
consensus_5076#2 ------------------------------------------------------------
consensus_5076#3 ------------------------------------------------------------
consensus_5076#0 ATCTCGTCGATCTGTACGCTGAACGAATTCCCTGCCAATCTGTACGCACTGCGGCTGGTG 120
consensus_5076#1 ------------------GATNGCCCAGGGTTAATGCGTAGCAGCTGTTCGAGATCTACT 42
consensus_5076#2 ------------------------------------------------------------
consensus_5076#3 ------------------------------------------------------------
consensus_5076#0 GTGTTTAACTGACAATCTTCCTTGTGTTGCTGGTTGCTGCGGCTGTACTGGGGAAACATC 180
consensus_5076#1 ACAGCTGTTCGAAATCGCACGACATNGCAGAAAGCAGGCCACCAGCACCGCAGCGGAAGG 102
consensus_5076#2 ---------------------------------------CG-GTATC--CCGAGG--CGT 16
consensus_5076#3 ------------AATCCCCCGAGGTTAGTCATTGCTGCTCGCGTATC--CCGAGG--CGT 44
consensus_5076#0 TCACCCCGCAAGCCTGTACTGCTGCTGGTCATTGCTTGCTCGGTATCTGCTGAGTGCTGT 240
consensus_5076#1 TTTGCGCAGCTTGCTTGATCTCGTCGATCGTACGCTGAACGAATTCCCTGCAATCTGTAC 162
* * *
consensus_5076#2 TCAC-G---GCTGA-AACGCTGGACGACTTCATTGCCACGGAA--GCATC-----GCCTT 64
consensus_5076#3 TCAC-G---GTTGA-AACGCTGGACGACTTCATTGCCACGGAA--GCATCT----GCCTT 93
consensus_5076#0 GCACTG---GCTGA-AACGCTGGACGACTTCATTGCCACTGGAATGCATC-----GCCTT 291
consensus_5076#1 GCACTGCGTGCTGGTGGTGTTTAACGACAATCTTCCTATGGTATGCGGTTGCGCGGCTGT 222
*** * * ** * * ***** ** * * * * * ** *
consensus_5076#2 ACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTG---AAATCAACCAGCACGGACA 121
consensus_5076#3 ACAAGCAACGTATCCTGAACCTGCTCGGCGGTGCGCTG---AAATCAACCAGCACGGACA 150
consensus_5076#0 ACAAGCAACGTATCCTGAACCTGCTCGGCTGTGTGCTGCTGAAATCAACCAGCACGGACA 351
consensus_5076#1 ACCTGGGGAAACATCTCANCCCGAAAGCCGTACTGNTGCTGGTCATTTGCTGCTCGGGTA 282
** * ** * ** * * * * ** * ** *** *
consensus_5076#2 -GTGCGG--CCGTACT-GTATC-GCAATGCACT-GCTCTGGCGGCTGTACCTG-CGGGAA 174
consensus_5076#3 -GTGCGG--CCGTACTTGTATCTGCAATGCACTAGGTCTGGCGGCTGTACCTGGCGGGAA 207
consensus_5076#0 TGTGCTGGCCTGTACT-GTATC-GCAATGCACT-GCTCTGGCGGCTGTACCTG-CGGGAA 407
consensus_5076#1 -TCGCGACGCGGTGCNCGGCTG---AACACGCTTGGACGANTTCATTTGCGCACCGNGAA 338
** * ** * * * ** * ** * * * * * ** ***
consensus_5076#2 CT-GTTCGAT-CAACCGAAC-GCAC-CACCCGGATACAGTGTGCTGGAGC--AGTGCCGG 228
consensus_5076#3 CTAGTTCGATACAAACGAAC-GCACACAACCGGATACAGTGTGCTGGAGGCAGNTGCCGG 266
consensus_5076#0 CTTGTTCTGATCAACCGAACTGCAC-CACCTGGATACAGTGTGCTGGAGC--AGTGCCGG 464
consensus_5076#1 AGCATCTGGCTTACNAAAGCAACGGTATCCNTGAAACCCTTGTCGGACGTNTAGNGCACT 398
* * * * * * ** ** * * * * **
consensus_5076#2 AGAACGCTGTACGT-GGCACTGGAA--------GCGTGCCCG-TGGAATAAGGCGCTCTA 278
consensus_5076#3 AGAACGCTGTACGTTGGCACTGGAAA-------GCGTGCCCGGTGGAATAAGGCGCTCTA 319
consensus_5076#0 AGAACGCTGTACGT-GGCACTGGAA--------GCGTGCCCG-TGGAATAAGGCGCTCTA 514
consensus_5076#1 AGAAATCCAACCAGCAACTNNGGGACAAGGTTGGCGGGCTNG-TGAACCTCGTCATTCCG 457
**** * * * ** * *** ** * ** * * * **
consensus_5076#2 CCTCGATGGGGC-------GTCCTGC-GCACCGCAGGAAC-TGTCCCAG--CTGCT-TGA 326
consensus_5076#3 CCTCGATGGGGC-------GTC-TGC-GCACCGNAGGAAC-TGTCCCAGAGCTGCTATGA 369
consensus_5076#0 CCTCGATGGGGCT------GTCCTGCTGCACCGCAGGAAC-TGTCCCAG--CTGCT-TGA 564
consensus_5076#1 CCACACTGGCGCAAACCNGGNNNGNTTCCTCTGTGGGCACGNGCCGTGNGTATACCCCCT 517
** * *** ** * * * * ** ** * * * *
consensus_5076#2 TTTGA--TGATGG-AAAAGCAGCT-CCG-GGTGCACGCGATCCCGGCAAGCAC---GTTG 378
consensus_5076#3 TTTTGCGTGATGGCANAAGCAGCTACCGCGGTGCACGCGATCCCGGAAGA------GTTG 423
consensus_5076#0 TTTGA--TGATGG-AAAAGCAGCT-CCG-GGTGCACGCGATCCCGGAAGA------GTTG 613
consensus_5076#1 TNTGGCCTGGGTGCACAACCTGGT---G-GTTACGCGACATTCCCNAAAACNCGGCAANA 573
* * ** * * ** * * * * * * * ** ** ** *
consensus_5076#2 GCTATACTGCAGATGAAGGC--ATAACAATAAAACTGCGCTANANCTCAGCGCTGCATGT 436
consensus_5076#3 GCTATACTGCG--TGAAGCG--ATAACAAGTAAAATG-GTTAA---TCGGTGATGTATAT 475
consensus_5076#0 GCTATACTGCG--TGAAGG---ATAACAATAAAATGGTTCGGTGAACTGGTACTATCCCT 668
consensus_5076#1 ANCAGACGACACCCAAACCCCGGTGACAATAATCCCAGGCTAGTGTTGNCTGGTGAGCGC 633
* ** * ** * **** * *
consensus_5076#2 ACTTAT-TCCCTAAAACAACAACACACACNCACNCCACACACACTCCTCACNAACACCCN 495
consensus_5076#3 --------CCTAAAAACAACAACACACAAACAAAT------------------------- 502
consensus_5076#0 AACC-T-TAAAAAAAANCACANCAAAAAAACAAAAAAGACANACACANACNAGTNNACAC 726
consensus_5076#1 CAGGATGTGGCCTGCGGANNGACANACCGTCACNTGNCTAACCAGCNTTAGTGTGCCGCT 693
** * **
consensus_5076#2 CAGAGACCCCGCCAAACGACCTCTAATTCCCCATATACTA-------------------- 535
consensus_5076#3 ------------------------------------------------------------
consensus_5076#0 CAGTGANCCATCGACAACACAAAACACNGACACAGANCAGACAACAAGCACAGGAGCCAC 786
consensus_5076#1 GTGTGTNAAAGCCCGNTTGTGCCCCCTTGCTGGNANNAA--------------------- 732
consensus_5076#2 ------------------------------------------------------------
consensus_5076#3 ------------------------------------------------------------
consensus_5076#0 TATTGTTTANAGCGCCTGGAAACNGCTTTATTTCCCCTTTTAAGGTNGAGGGGNGATTAC 846
consensus_5076#1 ------------------------------------------------------------
consensus_5076#2 ------------------------------------------------------------
consensus_5076#3 ------------------------------------------------------------
consensus_5076#0 AGGTTAACAGCGCTTANGGNGACCTTGGCCGGGCCNGTTTTACGCAANCCGNTCGTATCG 906
consensus_5076#1 ------------------------------------------------------------
consensus_5076#2 -----------------------
consensus_5076#3 -----------------------
consensus_5076#0 ACCTTGGCAGAAAAANNCCCCTT 929
consensus_5076#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||