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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 890 fasta sequence
[CCGGAGCTGATTTGAGCTTCGTTTCAGTCATGACTGTTGATGACGGAAACAGTGGCATTTGGCAGCACTGTTCACAGCCAGAAATGATTATGCTTGTGACAGCATTAAGCTCAGCTTGTCAGTCAAAGTATCGCGGTTGACTCAAGCACTCGCATGCCCTTTCATTGAGTATCAGCAATGAGCATCAAGCTACTACGAATATGTTCGTTGGTGAATATCTCGTGATGCTCATGACATTTTGCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACCGTTCACGTCCCATAGGTTTTGTTTGAAAAACTGAATTGGCCATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTAAATATCAGTTCCAAAAACTCCCCAAACTGGGGTGATAGTGCTATAATAAGGGTGCATCTGGCGTGCATCGAAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTTTAGTGTGGTGCACGAAGCTGGCCAATGGGCGATCGTGTTAGGCAAAGTCCCAGGTTCGTTTGCTTAGCAGGTTAGGTTGAGTTACAACGCGCGTTACCCATCCTGAGTGCAGCATTTCCAATCACTATGTTTAAGCGTTTAGCCATAAGCCGGGAACGGGT-AGAGT-AGGTGGTGTATTTAATGCATTCCTTTGTCGGTACGGTACAGTATTTGCACACATCCTCGGATGCAGTATTGGGGTTTATTTGCCGTTCAGGGTAACCAGAAACCCTGCTTAACGCATTTGCTAAACTAAGACTATCCAGGTGTGGGCCCTTTTTGCTCACTTGTAGGGTTAAGGCAATGTGTAACAAAAACAAGTGAAACCAAAAAAACGAAACACTGTATGTAGGTCTAATTTTTCCCTCTATCCCATCCCACC]
[+] EMBL BM622898 [CCGGAGCTGATTTGAGCTTCGTTTCAGTCATGACTGTTGATGACGGAAACAGTGGCATTTGGCAGCACTGTTCACAGCCAGAAATGATTATGCTTGTGACAGCATTAAGCTCAGCTTGTCAGTCAAAGTATCGCGGTTGACTCAAGCACTCGCATGCCCTTTCATTGAGTATCAGCAATGAGCATCAAGCTACTACGAATATGTTCGTTGGTGAATATCTCGTGATGCTCATGACATTTTGCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACCGTTCACGTCCCATAGGTTTTGTTTGAAAAACTGAATTGGCCATTCACTAAAAGACATAGATGTAAGCCTCTCGTATTAAATATCAGTTCCAAAAACTCCCCAAACTGGGGTGATAGTGCTATAATAAGGGTGCATCTGGCGTGCATCGACGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTTTAGTGTGGTGCACGAAGCTGGCCAATGGGCGATCGTGTTAGGCAAAGTCCCAGGTTCGTTTGCTTAGCAGGTTAGGTTGAGTTACAACGCGCGTTACCCATCCTGAGTGCAGCATTTCCAATCACTATGTTTAAGCGTTTAGCCATAAGCCGGGAACGGGTAAAAGTAAGGGGGTGT ]
[+] EMBL BX624763 [ GGAAACAGTGGCATTTGGCAGCACTGTTCACAGCCAGAAATGATTATGCTTGTGACAGCATTAAGCTCAGCTTGTCAGTCAAAGTATCGCGGTTGACTCAAGCACTCGCATGCCCTTTCATTGAGTATCAGCAATGAGCATCAAGCTACTACGAATATGTTCGTTGGTGAATATATCGTGATGCTCATGACATTTTGCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACCGTTCACGTCCCATAGGTTTTGTTTGAAAAACTGAATTGGCCATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTAAATATCAGTTCCAAAAACTCCCCAAACTGGGGTGATAGTGCTATAATAAGGGTGCATCTGGCGTGCATCGAAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTTTAGTGTGGTGCACGAAGCTGGCCAATGGGCGATCGTGTTAGGCAAAGTCCCAGGTTCGTTTGCTTAGCAGGTTAGGTTGAGTTACAACGCGCGTTACCCATCCTGAGTGCAGCATTTCCAATCACTATGTTTAAGCGTTTAGCCATAAGCCGGGAACGGGT AGAGT AGGTGGTGTATTTAATGCATTCCTTTGTCGGTACGGTACAGTAT ]
[+] EMBL BX611049 [ CCATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTAAATATCAGTTCCAAAAACTCCCCAAACTGGGGTGATAGTGCTATAATAAGGGTGCATCTGGCGTGCATCGAAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTTTAGTGTGGTGCACGAAGCTGGCCAATGGGCGATCGTGTTAGGCAAAGTCCCAGGTTCGTTTGCTTAGCAGGTTAGGTTGAGTTACAACGCGCGTTACCCATCCTGAGTGCAGCATTTCCAATCACTATGTTTAAGCGTTTAGCCATAAGCCGGGAACGGGT AGAGT AGGTGGTGTATTTAATGCATTCCTTTGTCGGTACGGTACAGTATTTGCACACATCCTCGGATGCAGTATTGGGGTTTATTTGCCGTTCAGGGTAACCAGAAACCCTGCTTAACGCATTTGCTAAACTAAGACTATCCAGGTGTGGGCCCTTTTTGCTCACTTGTAGGGTTAAGGCAATGTGTAACAAAAACAAGTGAAACCAAAAAAACGAAACACTGTATGTAGGTCTAATTTTTCCCTCTATCCCATCCCACC]
consensusID : consensus_5078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence
[ATTGCCGNGGTTATGATGCTCATGACATTTTGCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACCTGTTCACGTCCATAGTGTTTTGTTTGAAAAACTGAATTGGCATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTANNATATCAGTTCCACAAAACTCCCCAAACTGTGTGTGTGATAGTGCTATACATAAGGGTGCATACTGGCGTGCATCGCAAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTACAGTGCTGGNTGCAACGAAANGCCTTGGCCCAACTTGGGCCGAATNCAGATTGTTTAGCGCAACAAAGATACCNCCAGNGTTNACAGCTCAATGCTTTAAGCAACAGTANANCGGTACGCACGTTACCACACNGGCCGCGATATAAGACCCATACCTTGAAATGGCTCAAGCACATTTNATCCCAAAATTTCAACTAAGTTTGTTACTTTACAAATGACNGNCCGAACAAGACTCACATGTCACCAACGGGCCACTGAAGGCAAACCAGGAGCACCCAAAATTGGGGCAGGCNCCAGGGGAAAAAGTTGAGGGAAAAACACCCCTGGNAGCATTGGNGCGCNGCAACAANGANNTGCACGTTCATGGCCGCCCCACGAGAAAACNACANAGATTGGTGAGAAGAGCCAANCCGACCAAANCACCTGAGACATATGGTAANTTGNCCGAAACTTCCTATGAAACAGNGGCAATGCATGTTTACAAACGGAATTATATACCAACTAACAACAGGATAAGCACCCGNCCCGCTNTGATCATNGTGTACATAGAAANANTTAAACAGACTTGGGANTG]
[+] EMBL AL692224 [ATTGCCGNGGTTATGATGCTCATGACATTTTGCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACCTGTTCACGTCCATAGTGTTTTGTTTGAAAAACTGAATTGGCATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTANNATATCAGTTCCACAAAACTCCCCAAACTGTGTGTGTGATAGTGCTATACATAAGGGTGCATACTGGCGTGCATCGCAAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTACAGTGCTGGNTGCAACGAAANGCCTTGGCCCAACTTGGGCCGAATNCAGATTGTTTAGCGCAACAAAGATACCNCCAGNGTTNACAGCTCAATGCTTTAAGCAACAGTANANCGGTACGCACGTTACCACACNGGCCGCGATATAAGACCCATACCTTGAAATGGCTCAAGCACATTTNATCCCAAAATTTCAACTAAGTTTGTTACTTTACAAATGACNGNCCGAACAAGACTCACATGTCACCAACGGGCCACTGAAGGCAAACCAGGAGCACCCAAAATTGGGGCAGGCNCCAGGGGAAAAAGTTGAGGGAAAAACACCCCTGGNAGCATTGGNGCGCNGCAACAANGANNTGCACGTTCATGGCCGCCCCACGAGAAAACNACANAGATTGGTGAGAAGAGCCAANCCGACCAAANCACCTGAGACATATGGTAANTTGNCCGAAACTTCCTATGAAACAGNGGCAATGCATGTTTACAAACGGAATTATATACCAACTAACAACAGGATAAGCACCCGNCCCGCTNTGATCATNGTGTACATAGAAANANTTAAACAGACTTGGGANTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5078#0 CCGGAGCTGATTTGAGCTTCGTTTCAGTCATGACTGTTGATGACGGAAACAGTGGCATTT 60
consensus_5078#1 ------------------------------------------------------------
consensus_5078#0 GGCAGCACTGTTCACAGCCAGAAATGATTATGCTTGTGACAGCATTAAGCTCAGCTTGTC 120
consensus_5078#1 ------------------------------------------------------------
consensus_5078#0 AGTCAAAGTATCGCGGTTGACTCAAGCACTCGCATGCCCTTTCATTGAGTATCAGCAATG 180
consensus_5078#1 ------------------------------------------------------------
consensus_5078#0 AGCATCAAGCTACTACGAATATGTTCGTTGGTGAATATCTCGTGATGCTCATGACATTTT 240
consensus_5078#1 --------------------------ATTGCCGNG---GTTATGATGCTCATGACATTTT 31
*** * * ******************
consensus_5078#0 GCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACC-GTTCACGTCCCATAGGTTTTG 299
consensus_5078#1 GCAGCAATGCTTCTAACCATGCACAAACAGTTTGCACCTGTTCACGTCCATAGTGTTTTG 91
************************************** ********** ******
consensus_5078#0 TTTGAAAAACTGAATTGGCCATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTAAA- 358
consensus_5078#1 TTTGAAAAACTGAATTGGC-ATTTACTAAAAGACATAGATGTAAGCCTCTCGTATTANNA 150
******************* *************************************
consensus_5078#0 TATCAGTTCCA-AAAACTCCCCAAACTGGG---GTGATAGTGCTATA-ATAAGGGTGCAT 413
consensus_5078#1 TATCAGTTCCACAAAACTCCCCAAACTGTGTGTGTGATAGTGCTATACATAAGGGTGCAT 210
*********** **************** * ************** ************
consensus_5078#0 -CTGGCGTGCATCG-AAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTTTA 471
consensus_5078#1 ACTGGCGTGCATCGCAAGAGTCTAGTCAAACATTCGCAATGACATAATCGTACATGTACA 270
************* ****************************************** *
consensus_5078#0 GTGT--GGTGCA-CGAAGC----TGGCCAA---TGGGC--------GATCGTGTTAGGCA 513
consensus_5078#1 GTGCTGGNTGCAACGAAANGCCTTGGCCCAACTTGGGCCGAATNCAGATTGTTTAGCGCA 330
*** * **** **** ***** * ***** *** ** * ***
consensus_5078#0 A-------AGTCCCAGGTTCGTTTGCTTAGCAGGTTAGGTTGAGTTACAACG-----CGC 561
consensus_5078#1 ACAAAGATACCNCCAGNGTTNACAGCTCAATGCTTTAAGCAACAGTANANCGGTACGCAC 390
* * **** * *** * *** * ** * ** * *
consensus_5078#0 GTTACCCATCCTGAGTGCAGCATT---TCCAATCACTAT----GTTTAAGCG---TTTAG 611
consensus_5078#1 GTTACC-ACACNGGCCGCGATATAAGACCCATACCTTGAAATGGCTCAAGCACATTTNAT 449
****** * * * ** ** *** * * * * **** ** *
consensus_5078#0 CCATAAGCCGGGAACGGGTAGAGTA-------GGTGGTGTATTTAATGC-ATTCCTTTGT 663
consensus_5078#1 CCCAAAATTTCAACTAAGTTTGTTACTTTACAAATGACNGNCCGAACAAGACTCACATGT 509
** ** * ** ** ** ** * ** ***
consensus_5078#0 CGGTA-CGGTACAGTATTTGCACACATCCTCGGATGCAGTATTGGGGTTTATTT--GCCG 720
consensus_5078#1 CACCAACGGGCCACTGAAGGCAAAC-CAGGAGCACCCAAAATTGGGGCAGGCNCCAGGGG 568
* * *** ** * *** ** * * ** ******* * *
consensus_5078#0 TTCAGGGTAACCAGAAACCCTGCTTAACGCATTTGCTAAACTAAGACTATCCAGGTGTGG 780
consensus_5078#1 AAAAAGTTGAGGGAAAAACACCCCTGGNAGCATTGGNGCGCNGCAACAANG-ANNTGCAC 627
* * * * *** * * * *** * ** * * **
consensus_5078#0 GCCCTTT-TTGCTCACTTGTAGGGTTAAGGCAATGTGTAACAAAAACAAGTGAAACCAAA 839
consensus_5078#1 GTTCATGGCCGCCCCACGAGAAAACNACANAGATTGGTGAGAAGAGCCAANCCGACCAAA 687
* * * ** * * * ** ** * ** * * * ******
consensus_5078#0 AAAAC---GAAACACTGTATGTAGGTCTAATTTTTCCCTCTATCCCATCCCACC------ 890
consensus_5078#1 NCACCTGAGACATATGGTAANTTGNCCGAAACTTCCTATGAAACAGNGGCAATGCATGTT 747
* * ** * * *** * * * ** ** * * * * * *
consensus_5078#0 ------------------------------------------------------------
consensus_5078#1 TACAAACGGAATTATATACCAACTAACAACAGGATAAGCACCCGNCCCGCTNTGATCATN 807
consensus_5078#0 -----------------------------------
consensus_5078#1 GTGTACATAGAAANANTTAAACAGACTTGGGANTG 842
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||