cluster # 5083

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Anopheles gambiae
cluster # 5083 cluster # 5083 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5083#0 length = 1201 sequences # 3

consensus_5083#1 length = 585 sequences # 1

consensusID : consensus_5083#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1201
fasta sequence

                              [GATNGCCGAGGNNCGTGATCTGGGGCTGCGGTTCAACGCTGATGGCTCGGTCGGGAAAGCTGTTCGAGCGGGCGAGTGGTGACCGCAAGCTGATCGTCACTTCGGCCCACTTTTCCGATCTGCCCATGGAGGTCATCCTGTACATTCTGCGCTGGGTGGTGTCGAACGATTTGGACCTGAAATCGCTCNAGCGGTTTGCGTCGGTCTGTCGCGGTTTCTATCTGCTTGCGCGAGATCCCGAAATCTGGCGTCATGCCTGCATGAGGATTTGGGGCGTTAATCTGGGTGTGCTGAAGGGAACACCGTTCAGCTCCTGGCGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGATGTTACATCAG-CGAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTCTATCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAGGTGCTAATGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACGTGTCCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGTTATTGTGGTCATACAGCGCAACCGTCCATCGGCGGCCGGACAAATGCAACGCCCCGGTCGCAAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAGCACCGGCAAGCGGCCGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGCAGCGCAACAATCAGGAGAAAACGACCCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTACTTTTCGCGCGTCAAGAGCTACCACCAGGAATCGGAAGGACCATTGAAGTAGTTTGCTCGTGCGGCGCGCAATACATGCTCTTTGCTTGCGGGAGCCTAAAGATCGAGCAGAATACGATACTTTACCCAGAGAGAGAGAGAGACACAGTAGGAGATGATTTATTTTTTGCATGGTTTTTTTCTCTCCTACCCGTAGGTAATGATAGTACGAAAAACAATCGTGTTAATTTTAACCCGTTTCGGTGAGTCGTGTGATGGGCTGAAATTGTAAGAAGAGAAGCAGTTCTTCGGTGTCGGAAAAGCCTAGCTTATATGAATGTGAAAAGGCTCGAGAAACCATCTTAAAGGTGAATAAATCAGT]

[+] EMBL AL693483             [GATNGCCGAGGNNCGTGATCTGGGGCTGCGGTTCAACGCTGATGGCTCGGTCGGGAAAGCTGTTCGAGCGGGCGAGTGGTGACCGCAAGCTGATCGTCACTTCGGCCCACTTTTCCGATCTGCCCATGGAGGTCATCCTGTACATTCTGCGCTGGGTGGTGTCGAACGATTTGGACCTGAAATCGCTCNAGCGGTTTGCGTCGGTCTGTCGCGGTTTCTATCTGCTTGCGCGAGATCCCGAAATCTGGCGTCATGCCTGCATGAGGATTTGGGGCGTTAATCTGGGTGTGCTGAAGGGAACACCGTTCAGCTCCTGGCGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGATGTTACATCAG CGAACGAGCTACCTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX621978             [                                                                                                                           CCATGGAGGTCATCCTGTACATTCTGCGCTGGGTGGTGTCGAACGATTTGGACCTGAAATCGCTCGAGCGGTTTGCGTCGGTCTGTCGCGGTTTCTATCTGCTTGCGCGAGATCCCGAAATCTGGCGTCATGCCTGCATGAGGATTTGGGGCGTTAATCTGGGTGTGCTGAAGGGAACACCGTTCAGCTCCTGGCGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGATGTTACATCAGCCGAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTCTATCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAGGTGCTAATGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACGTGTCCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGTTATTGTGGTCATACAGCGCAACCGTCCATCGGCGGCCGGACAAATGCAACGCCCCGGTCGCAAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAGCACCGGCAAGCGGCCGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGCAGCGCAACAATCAGGAGAAAACGACCCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTACTTTTCGCGCGTCAAGAGCTACCACCAGGAATCGGAAGGACCATT                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTGGTCATACAGCGCAACCGTCCATCGGCGGCCGGACAAATGCAACGCCCCGGTCGCAAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAGCACCGGCAAGCGGCCGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGCAGCGCAACAATCAGGAGAAAACGACCCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTACTTTTCGCGCGTCAAGAGCTACCACCAGGAATCGGAAGGACCATTGAAGTAGTTTGCTCGTGCGGCGCGCAATACATGCTCTTTGCTTGCGGGAGCCTAAAGATCGAGCAGAATACGATACTTTACCCAGAGAGAGAGAGAGACACAGTAGGAGATGATTTATTTTTTGCATGGTTTTTTTCTCTCCTACCCGTAGGTAATGATAGTACGAAAAACAATCGTGTTAATTTTAACCCGTTTCGGTGAGTCGTGTGATGGGCTGAAATTGTAAGAAGAGAAGCAGTTCTTCGGTGTCGGAAAAGCCTAGCTTATATGAATGTGAAAAGGCTCGAGAAACCATCTTAAAGGTGAATAAATCAGT]




>consensus_5083#0
GATNGCCGAGGNNCGTGATCTGGGGCTGCGGTTCAACGCTGATGGCTCGGTCGGGAAAGC
TGTTCGAGCGGGCGAGTGGTGACCGCAAGCTGATCGTCACTTCGGCCCACTTTTCCGATC
TGCCCATGGAGGTCATCCTGTACATTCTGCGCTGGGTGGTGTCGAACGATTTGGACCTGA
AATCGCTCNAGCGGTTTGCGTCGGTCTGTCGCGGTTTCTATCTGCTTGCGCGAGATCCCG
AAATCTGGCGTCATGCCTGCATGAGGATTTGGGGCGTTAATCTGGGTGTGCTGAAGGGAA
CACCGTTCAGCTCCTGGCGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGAT
GTTACATCAGCGAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTCTA
TCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAGGT
GCTAATGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACGTGT
CCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGTTATTGT
GGTCATACAGCGCAACCGTCCATCGGCGGCCGGACAAATGCAACGCCCCGGTCGCAAGGC
ACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAG
CACCGGCAAGCGGCCGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGCAGCG
CAACAATCAGGAGAAAACGACCCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTA
CTTTTCGCGCGTCAAGAGCTACCACCAGGAATCGGAAGGACCATTGAAGTAGTTTGCTCG
TGCGGCGCGCAATACATGCTCTTTGCTTGCGGGAGCCTAAAGATCGAGCAGAATACGATA
CTTTACCCAGAGAGAGAGAGAGACACAGTAGGAGATGATTTATTTTTTGCATGGTTTTTT
TCTCTCCTACCCGTAGGTAATGATAGTACGAAAAACAATCGTGTTAATTTTAACCCGTTT
CGGTGAGTCGTGTGATGGGCTGAAATTGTAAGAAGAGAAGCAGTTCTTCGGTGTCGGAAA
AGCCTAGCTTATATGAATGTGAAAAGGCTCGAGAAACCATCTTAAAGGTGAATAAATCAG
T

consensusID : consensus_5083#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CAGAATCCCCCGAGGTTATACGAGGGCTGAAGGGAACACCGTTCAGCTCCTGGCNGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGATGTTACATCAGCCGAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTCTATCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAGGTGCTANATGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACAGTGTCCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGTATATTGTGGTCATACAGCGCAACCGTCCATCGGCGGCGGACAAATGCAACGCCCCGGTCGCAAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAGCACCGGCAAGCGGACGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGGCAGCCGCAACAATCAGGNAGCANAACACGACCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTA]

[+] EMBL AL692308             [CAGAATCCCCCGAGGTTATACGAGGGCTGAAGGGAACACCGTTCAGCTCCTGGCNGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGATGTTACATCAGCCGAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTCTATCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAGGTGCTANATGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACAGTGTCCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGTATATTGTGGTCATACAGCGCAACCGTCCATCGGCGGCGGACAAATGCAACGCCCCGGTCGCAAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAGCACCGGCAAGCGGACGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGGCAGCCGCAACAATCAGGNAGCANAACACGACCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTA]




>consensus_5083#1
CAGAATCCCCCGAGGTTATACGAGGGCTGAAGGGAACACCGTTCAGCTCCTGGCNGCGAG
ATGTACATCAACAGGCCGCGCATACTCTTCCACGGATGTTACATCAGCCGAACGAGCTAC
CTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTCTATCGCCCGATACAGCTGGTAGAA
TACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAGGTGCTANATGATGACGACCGCCGA
TGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACAGTGTCCCCACACAGAATGAAATAC
TGCGCGGACACTATCGACTGCATGACGACATCGTATATTGTGGTCATACAGCGCAACCGT
CCATCGGCGGCGGACAAATGCAACGCCCCGGTCGCAAGGCACGTGATATTGAGCCAGAAT
ATGGACAGCAAACGTTCCTGATGGAGCTACAGATTGTGAGCACCGGCAAGCGGACGTTCA
GCCAGCTGCACTGGAAGCAGTACACGATGGTGCAGGCAGCCGCAACAATCAGGNAGCANA
ACACGACCAGTTCGAGCTAACCACAACCAAGTATCCGCCGCTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5083#0      GATNGCCGAGGNNCGTGATCTGGGGCTGCGGTTCAACGCTGATGGCTCGGTCGGGAAAGC 60
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      TGTTCGAGCGGGCGAGTGGTGACCGCAAGCTGATCGTCACTTCGGCCCACTTTTCCGATC 120
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      TGCCCATGGAGGTCATCCTGTACATTCTGCGCTGGGTGGTGTCGAACGATTTGGACCTGA 180
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      AATCGCTCNAGCGGTTTGCGTCGGTCTGTCGCGGTTTCTATCTGCTTGCGCGAGATCCCG 240
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      AAATCTGGCGTCATGCCTGCATGAGGATTTGGGGCGTTAATCTGGGTGTGCTGAAGGGAA 300
consensus_5083#1      ----------------------CAGAATCCCCCGAGGTTATACGAGGG--CTGAAGGGAA 36
                                             ** **     * * * **  * * *  **********

consensus_5083#0      CACCGTTCAGCTCCTGGCG-CGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGA 359
consensus_5083#1      CACCGTTCAGCTCCTGGCNGCGAGATGTACATCAACAGGCCGCGCATACTCTTCCACGGA 96
                      ******************  ****************************************

consensus_5083#0      TGTTACATCAGC-GAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTC 418
consensus_5083#1      TGTTACATCAGCCGAACGAGCTACCTACGGTCCGGGGAGAACAGCTTCCAGGACCAGTTC 156
                      ************ ***********************************************

consensus_5083#0      TATCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAG 478
consensus_5083#1      TATCGCCCGATACAGCTGGTAGAATACTATCGCTACTTTCGCTTCTTCGCTGATGGGAAG 216
                      ************************************************************

consensus_5083#0      GTGCTAA-TGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAAC- 536
consensus_5083#1      GTGCTANATGATGACGACCGCCGATGAGCCGCAGCAGTGCGTCGTGCGGCTAAAGCAACA 276
                      ******  *************************************************** 

consensus_5083#0      GTGTCCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGT-T 595
consensus_5083#1      GTGTCCCCACACAGAATGAAATACTGCGCGGACACTATCGACTGCATGACGACATCGTAT 336
                      ********************************************************** *

consensus_5083#0      ATTGTGGTCATACAGCGCAACCGTCCATCGGCGGCCGGACAAATGCAACGCCCCGGTCGC 655
consensus_5083#1      ATTGTGGTCATACAGCGCAACCGTCCATCGGCGGC-GGACAAATGCAACGCCCCGGTCGC 395
                      *********************************** ************************

consensus_5083#0      AAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATT 715
consensus_5083#1      AAGGCACGTGATATTGAGCCAGAATATGGACAGCAAACGTTCCTGATGGAGCTACAGATT 455
                      ************************************************************

consensus_5083#0      GTGAGCACCGGCAAGCGGCCGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAG 775
consensus_5083#1      GTGAGCACCGGCAAGCGGACGTTCAGCCAGCTGCACTGGAAGCAGTACACGATGGTGCAG 515
                      ****************** *****************************************

consensus_5083#0      -CAGC-GCAACAATCAGGAG--AAAACG-ACCCAGTTCGAGCTAACCACAACCAAGTATC 830
consensus_5083#1      GCAGCCGCAACAATCAGGNAGCANAACACGACCAGTTCGAGCTAACCACAACCAAGTATC 575
                       **** ************    * ***    *****************************

consensus_5083#0      CGCCGCTGTACTTTTCGCGCGTCAAGAGCTACCACCAGGAATCGGAAGGACCATTGAAGT 890
consensus_5083#1      CGCCGCTGTA-------------------------------------------------- 585
                      **********                                                  

consensus_5083#0      AGTTTGCTCGTGCGGCGCGCAATACATGCTCTTTGCTTGCGGGAGCCTAAAGATCGAGCA 950
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      GAATACGATACTTTACCCAGAGAGAGAGAGAGACACAGTAGGAGATGATTTATTTTTTGC 1010
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      ATGGTTTTTTTCTCTCCTACCCGTAGGTAATGATAGTACGAAAAACAATCGTGTTAATTT 1070
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      TAACCCGTTTCGGTGAGTCGTGTGATGGGCTGAAATTGTAAGAAGAGAAGCAGTTCTTCG 1130
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      GTGTCGGAAAAGCCTAGCTTATATGAATGTGAAAAGGCTCGAGAAACCATCTTAAAGGTG 1190
consensus_5083#1      ------------------------------------------------------------
                                                                                  

consensus_5083#0      AATAAATCAGT 1201
consensus_5083#1      -----------