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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1099 fasta sequence
[CGAATGACTATTGGAGACCCGCGGACGCCAGTGAGCGCCATGCTGTAGACGACGATCACGCGCAAACCGATAGCAAAAGCAAAAATAGGCTCTAACGCTCTTGTACAAAAAACATATCGACACCTCGCGACAACACTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTTATTTATCACTTGTTTTTCACGGCACTAGAGTAAGCGGTGCGGTGCGCGGCTACTTCCATTTTGGAGGTTCGTGCTAGGCGCACGCGGAAGTAGAAGAACAAATCAAGCTTAACCGTGAGTGAGACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGAGGAAGATAGAGATAGAGATAGAAAAGATAGGGACAGAAAATATTCAAATAGAGAGAAAAAGAAGAAGAGGAAGAGAGAGAAAAAGAAAGAAGAGAGAGAGAGAGAAAGAGAGAAGAAAAAGATACTAAAGAGAAATAGAAAAGATAAGAAAAAAACCGAAAGCAGTTAACTCCCCACAAACGGGTACACTGTTTGGGAGGAATCCCGT-GGGTGGTGATGTTGCACCGTTGTTTGTGATTTAAACGTGTGGGTTTCAACATATACACTTAAAGCGCACCGGCAGTGTGAAGAGTGAGAATTAAGGAGCGAACAAAGAGAGGGTAGAAATGATTAACAGAAACAGAAACCTAACCAACGTTCCGAGTGAATGTTGCGGCTAATCAAACGGACCTATTTTTATCCATTTCGATTTGTATCGCTTGCATCGCGCTATTGCTCACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATCAAAAAGGTTGCCTGTGGCCAGCGGATTGCATACCTTACGGGCGATTTAGGTCATTATCGGTCAGCTCTGTGCACAACTTCGCCCTCGGGGTATGCAATCTGGCTCACCTGCACCTTCCTGATTGGTCTGGTTTGTGATCTTCTAGCAAAGCGCTCACTTTAGAACCACGTCCTGTCTCGAATATACACATATATATATATATTTATATACACCGTTCTACTTCTCTCGTATTTACGGACCATTTGCACCACTGCTCA]
[+] EMBL BX608978 [CGAATGACTATTGGAGACCCGCGGACGCCAGTGAGCGCCATGCTGTAGACGACGATCACGCGCAAACCGATAGCAAAAGCAAAAATAGGCTCTAACGCTCTTGTACAAAAAACATATCGACACCTCGCGACAACACTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTTATTTATCACTTGTTTTTCACGGCACTAGAGTAAGCGGTGCGGTGCGCGGCTACTTCCATTTTGGAGGTTCGTGCTAGGCGCACGCGGAAGTAGAAGAACAAATCAAGCTTAACCGTGAGTGAGACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGAGGAAGATAGAGATAGAGATAGAAAAGATAGGGACAGAAAATATTCAAATAGAGAGAAAAAGAAGAAGAGGAAGAGAGAGAAAAAGAAAGAAGAGAGAGAGAGAGAAAGAGAGAAGAAAAAGATACTAAAGAGAAATAGAAAAGATAAGAAAAAAACCGAAAGCAGTTAACTCCCCACAAACGGGTACACTGTTTGGGAGGAATCCCGT GGGTGGTGATGTTGCACCGTT ]
[+] EMBL BM628124 [ AGATACTAAAGAGAAGTAGAAAAGATAAGAAAAAAACCGAAAGCAGTTAACTCCCCACAAACGGGTACACTGTTTGGGAGGAATCCCGTGGGGTGGTGATGTTGCACCGTTGTTTGTGATTTAAACGTGTGGGTTTCAACATATACACTTAAAGCGCACCGGCAGTGTGAAGAGTGAGAATTAAGGAGCGAACAAAGAGAGGGTAGAAATGATTAACAGAAACAGAAACCTAACCAACGTTCCGAGTGAATGTTGCGGCTAATCAAACGGACCTATTTTTATCCATTTCGATTTGTATCGCTTGCATCGCGCTATTGCTCACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATCAAAAAGGTTGCCTGTGGCCAGCGGATTGCATACCTTACGGGCGATTTAGGTCATTATCGGTCAGCTCTGTGCACAACTTCGCCCTCGGGGTATGCAATCTGGCTCACCTGCACCTTCCTGATTGGTCTGGTTTGTGATCTTCTAGCAAAGCGCTCACTTTAGAACCACGTCCTGTCTCGAATATACACATATATATATATATTTATATACACCGTTCTACTTCTCTCGTATTTACGGACCATTTGCACCACTGCTCA]
consensusID : consensus_5084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1051 fasta sequence
[NCCTTAGCCAGCATCCCGGGGTTGAAGTAAAGAACANATCAANCTTAACTGTGAGTGATACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGCAGGAAGCATAGAGCATAGCAGCATAGCAANAGATAGGGACAGAAACATATTCCAAATCAGAGAGAAAAACAGCAAGCAAGCAGGAAGCAGCAGCAGCAAACACAGCAAAGCACAGCAGCAGCAGCAGAGCAGCACAAGNAGCAGCACAGAAAACAGCATACTCAAAGCAGGAAATAGAAAAGATACAGAAAAAAACCGAGAAGCAGTTAACTCCCCAGAAAACGGGTACACTGTTTGGGGAGGAATCCCCGTGGGTGGTGATTGTTGCACCGGTATGTTTGTGATTTCAACACGTGTGGGTTTCAGCNATATACACTTCAAAGCGCAACCCGGGCAGTGTTGAAGAGATGAGAACTTCAAGGGAGGCGAACCANCAAGNAGAGGGGGTTAGNCAAACATTGGAATTTCACCAGCTAAAAGCGCTTAAGCCAAAGCGTTTCCCGGANGCTTGCAAACTGGTTCTGGCCGAGGGNTAAANTCCANACAGACGGGAAGGCCTTAATAAAATCATTACCCCCNCTTACACCANACNGNTCNGCTATTCCAGGCATCTTAGGGCCAATTCAGCGAGACATCATCTGGCANTCCACCACAGGGGCGACATTCACAAAACGAAGACNCCNNCACAACCAGAGCAACAAGCATAGCNCCGCTAGGAATGGANAAAACAGGAANCAANCCAACNCAAGANCNANAANAGCANGGGNAAAGGANAGGTNANNAAGNNNAANCACCCCCAGACGACAAAAGAAAAAAGNGGGNAGGGNNNNTAGCAGGGGNGCGCANAAGCAGTNNAGAGTCTAAGANANNTNAAGAACATAAAACACAAGGGAGGGNAAAGNAAACAGAGNANNCAANCAAAGACGGAGGCANANNNGANTCANNGNANAACNAGAAAAAACANACAAGGCCGATCGGAAGGGCGAANATTACGACCNANTANGAGGGCCAACGAC]
[+] EMBL AL696509 [NCCTTAGCCAGCATCCCGGGGTTGAAGTAAAGAACANATCAANCTTAACTGTGAGTGATACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGCAGGAAGCATAGAGCATAGCAGCATAGCAANAGATAGGGACAGAAACATATTCCAAATCAGAGAGAAAAACAGCAAGCAAGCAGGAAGCAGCAGCAGCAAACACAGCAAAGCACAGCAGCAGCAGCAGAGCAGCACAAGNAGCAGCACAGAAAACAGCATACTCAAAGCAGGAAATAGAAAAGATACAGAAAAAAACCGAGAAGCAGTTAACTCCCCAGAAAACGGGTACACTGTTTGGGGAGGAATCCCCGTGGGTGGTGATTGTTGCACCGGTATGTTTGTGATTTCAACACGTGTGGGTTTCAGCNATATACACTTCAAAGCGCAACCCGGGCAGTGTTGAAGAGATGAGAACTTCAAGGGAGGCGAACCANCAAGNAGAGGGGGTTAGNCAAACATTGGAATTTCACCAGCTAAAAGCGCTTAAGCCAAAGCGTTTCCCGGANGCTTGCAAACTGGTTCTGGCCGAGGGNTAAANTCCANACAGACGGGAAGGCCTTAATAAAATCATTACCCCCNCTTACACCANACNGNTCNGCTATTCCAGGCATCTTAGGGCCAATTCAGCGAGACATCATCTGGCANTCCACCACAGGGGCGACATTCACAAAACGAAGACNCCNNCACAACCAGAGCAACAAGCATAGCNCCGCTAGGAATGGANAAAACAGGAANCAANCCAACNCAAGANCNANAANAGCANGGGNAAAGGANAGGTNANNAAGNNNAANCACCCCCAGACGACAAAAGAAAAAAGNGGGNAGGGNNNNTAGCAGGGGNGCGCANAAGCAGTNNAGAGTCTAAGANANNTNAAGAACATAAAACACAAGGGAGGGNAAAGNAAACAGAGNANNCAANCAAAGACGGAGGCANANNNGANTCANNGNANAACNAGAAAAAACANACAAGGCCGATCGGAAGGGCGAANATTACGACCNANTANGAGGGCCAACGAC]
consensusID : consensus_5084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence
[GGCAGAATAGCCCCGAGGTTATCAAAGTTCCGAGTGAATGTTGCGGCTTTCAAACGGACCTATTTTTATCCATTTCGAGTTGTATCCGCTTGCATCGCGCTATATGCTACACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATACAAAAAGGTTAGCCTGTGGCAGTGGATTGCATACCTTACGGGCGATTTAGGTCATATATCGGTCAGACTACTGTGCACAACTTCGCCCTACGGGGTATGCAATCTGGGCTCANCTGACCTTCCTGATATGGNCTGGTATGTAGATCTTACTAGCAAAGCGCTCANTNTTACGAAACCACAGTACCTAGTCTCGAATATACACATANTAATAATATTATAATNATATACACCGTNCTTAACTTTCTACNCGTGGTCTTCACGGACCATTCTAGNCACCAACTCTCCACTTTGANTAACACCACAACCGTACTGCACAGCAACCANTNGGCNCCCTCCCCGGTGNAAACTGGCCGCGNAGCGCTGGCAGGCCGGCGTAACAGTTCGGCCACAGCCTTACATCTCCGCGTGTTGCACGATAGAGGTTGCGCTGTCGAACCGCTAGTCAGNGGCCTCGTAATAACAAGGATTGCATAAAACNCCCTTTCNTTCNAGANCCACTTATTCAAAAGAAANGACGANNATAGANACGNAGACACAAACACACTTCCTTAAGCAACACNGCCNGGCGNGCCGCACACGGCNTNTCTTANGCCCCCCTATTAAACNNAGCAGCGCGNGCTTNCAGACCNTCTCCAAGGACTCTATGCAGATCNTTGGCTCCCCGCCCTGTTTCTATTCCCACCACGGTCTCNNTTGGANACCTCGGCAGCAAAACACCCCCNNGGCGG]
[+] EMBL AL692423 [GGCAGAATAGCCCCGAGGTTATCAAAGTTCCGAGTGAATGTTGCGGCTTTCAAACGGACCTATTTTTATCCATTTCGAGTTGTATCCGCTTGCATCGCGCTATATGCTACACAGGAATACAAAACTCAAAACAAAACTGCCCTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATACAAAAAGGTTAGCCTGTGGCAGTGGATTGCATACCTTACGGGCGATTTAGGTCATATATCGGTCAGACTACTGTGCACAACTTCGCCCTACGGGGTATGCAATCTGGGCTCANCTGACCTTCCTGATATGGNCTGGTATGTAGATCTTACTAGCAAAGCGCTCANTNTTACGAAACCACAGTACCTAGTCTCGAATATACACATANTAATAATATTATAATNATATACACCGTNCTTAACTTTCTACNCGTGGTCTTCACGGACCATTCTAGNCACCAACTCTCCACTTTGANTAACACCACAACCGTACTGCACAGCAACCANTNGGCNCCCTCCCCGGTGNAAACTGGCCGCGNAGCGCTGGCAGGCCGGCGTAACAGTTCGGCCACAGCCTTACATCTCCGCGTGTTGCACGATAGAGGTTGCGCTGTCGAACCGCTAGTCAGNGGCCTCGTAATAACAAGGATTGCATAAAACNCCCTTTCNTTCNAGANCCACTTATTCAAAAGAAANGACGANNATAGANACGNAGACACAAACACACTTCCTTAAGCAACACNGCCNGGCGNGCCGCACACGGCNTNTCTTANGCCCCCCTATTAAACNNAGCAGCGCGNGCTTNCAGACCNTCTCCAAGGACTCTATGCAGATCNTTGGCTCCCCGCCCTGTTTCTATTCCCACCACGGTCTCNNTTGGANACCTCGGCAGCAAAACACCCCCNNGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5084#0 ------------------CGAATGACTATTGGAGACCCGCGGACGCCAGTGAGCGCCATG 42
consensus_5084#2 ------------------------------------------------------------
consensus_5084#1 NCCTTAGCCAGCATCCCGGGGTTGAAGTAAAGAACANATCAANCTTAACTGTGAGTGATA 60
consensus_5084#0 CTGTAGACGACGATCACGCGCAAACCGATAGCAAAAGCAAAAATAGGCTCTAACGCTCTT 102
consensus_5084#2 ------------------------------------GGCAGAATAG-CCCCGAGGTTATC 23
consensus_5084#1 CCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGCAGGAAGCATAGAGCATAGCAGCATA 120
* * **** *
consensus_5084#0 ---GTAC-------AAAAAACATATCGACACCTCGCGACAACACTTGTGTGTGTGTGTGT 152
consensus_5084#2 AAAGTTC-------CGAGTGAATGTTG-CGGCTTTCAAACGGACCTATTTTTATCCATTT 75
consensus_5084#1 GCAANAGATAGGGACAGAAACATATTCCAAATCAGAGAGAAAAACAGCAAGCAAGCAG-- 178
** * * *
consensus_5084#0 GTGTTTGTGTGTGTGTGTTATTTATCACTTGTTTTTCACGGCACTAGAGTAAGCGGTGCG 212
consensus_5084#2 CGAGTTGTATCCGCTTGC-----ATCGC--GCTATATGCTACACAGGAATACAAAACTCA 128
consensus_5084#1 GAAGCAGCAGCAGCAAACACAGCAAAGCACAGCAGCAGCAGCAGAGCAGCACAAGNAGCA 238
* * * * * ** * * *
consensus_5084#0 GTGCGCGGCTACTTCCATTTTGGAGGTTCGTGCTAGGCGCACGCGGAAGTAGAAGAACAA 272
consensus_5084#2 AAACAAAACTGCC-CTGTTGGAAGCAAACAAGTCAGCCGTAGGCATGATACCCCATACAA 187
consensus_5084#1 GCACAGAAAACAGCATACTCAAAGCAGG-AAATAGAAAAGATACAGAAAAAAACCGAGAA 297
* * * * * * **
consensus_5084#0 ATCAAGCTTAACCGTGAGTGAGACCGTGAGAATTTAGGGAGTAGAGATGCATCTAAGAGG 332
consensus_5084#2 A--AAGGTTAGCC-----TGTGGCAGTG-GATTGCATACCTTACGGGCG-ATTTAGGTCA 238
consensus_5084#1 G---CAGTTAACTCCCCAGAAAACGGGTACACTGTTTGGGG-AGGAATCCCCGTGGGTGG 353
*** * * * * * * * *
consensus_5084#0 AAGATAG---AGATAGAGATAGAAAAGATAGGGACAGAAAATATTCAAATAGAGA----G 385
consensus_5084#2 TATATCGGTCAGACTACTGTGCACAACTTCGCCCTACGGGGTATGCAATCTGGGC----T 294
consensus_5084#1 TGATTGTTGCACCGGTATGTTTGTGATTTCAACACGTGTGGGTTTCAGCNATATACACTT 413
* * * * * * **
consensus_5084#0 AAAAAGAAGAAGAGGAAGAGAGAGAAAAAGAAAG----AAGAGAGAGAGAGAGAAAGAGA 441
consensus_5084#2 CANCTGACCTTCCTGATATGGNCTGGTATGTAGATCTTACTAGCAAAGCGCTCANTNTTA 354
consensus_5084#1 CAAAGCGCAACCCGGGCAGTGTTGAAGAGATGAGAACTTCAAGGGAGGCGAACCANCAAG 473
* * * ** *
consensus_5084#0 GAAGAAAAAGATACTAAAGAGAAATAGAAAAGATAAGAAAAAAACCGAAAGCAGTTA-AC 500
consensus_5084#2 CGAAACCACAGTACCTAGTCTCGAATATACACATANTAATAATATTATAATNATATACAC 414
consensus_5084#1 NAGAGGGGGTTAGNCAAACATTGGAATTTCACCAGCTAAAAGCGCTTAAGCCAAA-GCGT 532
* * ** * * *
consensus_5084#0 TCCCCACAAACGGGTACACT--GTTTG--GGAGGAATCCCGTGGGTGGTGATGTTGCACC 556
consensus_5084#2 CGTNCTTAACTTTCTACNCGTGGTCTT--CACGGACCATTCTAGNCACCAACTCTCCACT 472
consensus_5084#1 TTCCCGGANGCTTGCAAACTGGTTCTGGCCGAGGGNTAAANTCCANACAGACGGGAAGGC 592
* * * * * * ** * *
consensus_5084#0 GTTGTTTGTGATTTAAACGTGTGGGTTTCAACATATACACTTAAAGCGCACCGGCAGTGT 616
consensus_5084#2 TTGANTAACACCACAACCGTAC----TGCACAGCAACCANTNGGCNCCCTCCC-CGGTGN 527
consensus_5084#1 CTTAATAAAATCATTACCCCCN----CTTACACCANACNGNTCNGCTATTCCA--GGCAT 646
* * * * * * * ** *
consensus_5084#0 GAAGAGTGAGAATTAAGGAGCGAACAAAGAGAGGGTAGAAATGATTAACAGAAACAGAAA 676
consensus_5084#2 AAACTG-----GCCGCGNAGCGCTGGCAGGCCGGCGTAACAGTTCGGCCACAGCCTTACA 582
consensus_5084#1 CTTAGGGCCAATTCAGCGAGACATCATCTGGCANTCCACCACAGGGGCGACATTCACAAA 706
* ** * * * * * *
consensus_5084#0 CCTAACCAACGTTCCGAGTGAATGTTGCGGCTAATCAAACGGACCTATTTTTATCCATTT 736
consensus_5084#2 TCTCCGCGTGTTGCACGATAGAGGTTGCG-CTGTCGAACCGCTAGTCAGNGGCCTCGTAA 641
consensus_5084#1 ACGAAGACNCCNNCACAACCAGAGCAACAAGCATAGCNCCGCTAGGAATGGANAAAACAG 766
* * * * **
consensus_5084#0 CGATTTGTATCGCTTGCATCGCGCTATTGCTCACAGGAATACAAAACTCAAAACAAAACT 796
consensus_5084#2 TAACAAGGATTGCATAAAACNCCCTTTCNTTCN-AGANCCACTTATTCAAAAGAAANGAC 700
consensus_5084#1 GAANCAANCCAACNCAAGANCNANAANAGCANGGGNAAAGGANAGGTNANNAAGNNNAAN 826
* * *
consensus_5084#0 GCCCTGTTGGAAGCAAACA-AGTCAGCCGTAGGCATGATACCCCATCAAAAAGGTTGCCT 855
consensus_5084#2 GANNATAGANACGNAGACACAAACACACTTCCTTAAGCAACACNGCCNGGCGNGCCGCAC 760
consensus_5084#1 CACCCCCAGACGACAAA---AGAAAAAAGNGGGNAGGGNNNNTAGCAGGGGNGCGCANAA 883
* * * * * *
consensus_5084#0 GTGGCCA-GCGGATTGCATACCTTACGGGCGATTTAGGTCATTATCGGTCAGCTCTGTGC 914
consensus_5084#2 ACGGCNT-NTCTTANGCCCCCCTATTAAACNNAGCAGCGCGNGCTTNCAGACCNTCTCCA 819
consensus_5084#1 GCAGTNNAGAGTCTAAGANANNTNAAGAACATAAAACACAAGGGAGGGNAAAGNAAACAG 943
* * * * *
consensus_5084#0 ACAACTTCGCCCTCGGGGTATGCAATCTGGCTCACCTGCACCTTCCTGATTGGTCTGGTT 974
consensus_5084#2 AGGACTCTATGCAGATCNTTGGCTCCCCGCCCTGTTTCTATTCCCACCAC-GGTCTCNNT 878
consensus_5084#1 AGNANNCAANCAAAGACGGAGGCANANNNGANTCANNGNANAACNAGAAAAAACANACAA 1003
* * ** * *
consensus_5084#0 TGTGATCTTC--TAGCAAAGCGCTCACTTTAGAACCACGTCCTGTCTCGAATATACACAT 1032
consensus_5084#2 TGGANACCTCGGCAGCAAAACACCCCCNNGGCGG-------------------------- 912
consensus_5084#1 GGCCGATCGGAAGGGCGAANATTACGACCNANTANGAGGGCCAACGAC------------ 1051
* ** ** *
consensus_5084#0 ATATATATATATTTATATACACCGTTCTACTTCTCTCGTATTTACGGACCATTTGCACCA 1092
consensus_5084#2 ------------------------------------------------------------
consensus_5084#1 ------------------------------------------------------------
consensus_5084#0 CTGCTCA 1099
consensus_5084#2 -------
consensus_5084#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||