cluster # 5086

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Anopheles gambiae
cluster # 5086 cluster # 5086 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5086#0 length = 767 sequences # 3

consensus_5086#1 length = 606 sequences # 1

consensusID : consensus_5086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 767
fasta sequence

                              [GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGTACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCACCGTACCGATTGTCCATCAAAGGGTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGACGCAGCTTGTTCGTTCGAAAGAGAAGAACTTTCGTGTTTTTTTATTGT]

[+] EMBL BX615998             [GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGTACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTTCACTGAA                                                                                                                                      ]
[+] EMBL BX608851             [                                                                                               AAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCACCGTACCGATTGTCCATCAAAGGGTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGACGCAGCTTGTTCGTTCGAAAGAGAAGAACTTTCGTGTTTTTTTATTGT]
[+] EMBL BX608827             [                                                                                               AAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGATCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGCGCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTG                                                                                                                     ]




>consensus_5086#0
GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGTACGCTGCGCTTCCTGAGCG
CGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCGTGGATGGAGGGCGGCAACC
CGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGG
CCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGC
ACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCATCATCG
TGATGGGCACGACCGAGCGGCTGGGCGGCAACATACACGTCGACCAGCTGATGGACACGA
TCGGCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGC
GCTTCTCCGACAAGAGCCAGAAGGCGATCGATTTGCTGCGCGTCAAGTGCTTGAAGCTGC
GCTGTCTGGTGCTGAGCGATGGTCGCTATTATGAAACGGTGAAGGCAAACTTTGAGCGTG
CCGATCGTACGACTGTGGTCCGTACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGC
TGAGCAACTACAACGACTTGGTTTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCAC
CGTACCGATTGTCCATCAAAGGGTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGAC
GCAGCTTGTTCGTTCGAAAGAGAAGAACTTTCGTGTTTTTTTATTGT

consensusID : consensus_5086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [CCCCGAGGTTAACACGACTGTCGACGAGTGTCTGATTGATCTGCTGACGCGCATCCGACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACGTCGACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANTCTCTCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGTCGCCTACTATACTGACACNCGGNGAACGGCACANACCTCTNTGGACCCGCTAGCCCCGCACTCCNCNCA]

[+] EMBL AL692431             [CCCCGAGGTTAACACGACTGTCGACGAGTGTCTGATTGATCTGCTGACGCGCATCCGACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCGTGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACCAACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACGTCGACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGCTGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANTCTCTCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGTCGCCTACTATACTGACACNCGGNGAACGGCACANACCTCTNTGGACCCGCTAGCCCCGCACTCCNCNCA]




>consensus_5086#1
CCCCGAGGTTAACACGACTGTCGACGAGTGTCTGATTGATCTGCTGACGCGCATCCGACG
CTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCGTGG
ATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAACATC
TCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGCGTG
CTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTGACC
AACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACGTCG
ACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTTCGC
TGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANTCTC
TCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGTCGC
CTACTATACTGACACNCGGNGAACGGCACANACCTCTNTGGACCCGCTAGCCCCGCACTC
CNCNCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5086#0      -------------------GTCGACCGAGTGTCTGATCGATCTGCTGACGCGCATCCCGT 41
consensus_5086#1      CCCCGAGGTTAACACGACTGTCGAC-GAGTGTCTGATTGATCTGCTGACGCGCATCCG-- 57
                                         ****** *********** *******************   

consensus_5086#0      ACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTTAAGGCG 101
consensus_5086#1      ACGCTGCGCTTCCTGAGCGCGGGCCAGATCAATGGCTTTAACGATTCCGTGCTGAAGGCG 117
                      ***************************************************** ******

consensus_5086#0      TGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAAC 161
consensus_5086#1      TGGATGGAGGGCGGCAACCCGAAGTCCCTGATCGCGCTGGACCTCGACTCGTCGGACAAC 177
                      ************************************************************

consensus_5086#0      ATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGC 221
consensus_5086#1      ATCTCGGACGAGGCGCTGGCCCGGTTCATCACCCGGTACGGGGCGCAGCTGCAGGCGTGC 237
                      ************************************************************

consensus_5086#0      GTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTG 281
consensus_5086#1      GTGCTTTCCGGCATGACGCACATCACCGACCAGCTGTGGATGTCGATCATGCCGATACTG 297
                      ************************************************************

consensus_5086#0      ACCAACATCCGC-ATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAA-CATACACG 339
consensus_5086#1      ACCAACATCCGCCATCATCGTGATGGGCACGACCGAGCGGCTGGGCGGCAAACATACACG 357
                      ************ ************************************** ********

consensus_5086#0      TCGACCAGCTGATGGACACGATCGGC-TCGCACTGCACCAAGCTGGAGCGGTTGGAGCTT 398
consensus_5086#1      TCGACCAGCTGATGGACACGATCGGCCTCGCACTGCACCAAGCTGGAGCGGTTGGAGCTT 417
                      ************************** *********************************

consensus_5086#0      CGCTGGGATCCGGAGAATTTGCGCTTCTCCGA-CAAGAGCCAGAAGGCGATCGAT----- 452
consensus_5086#1      CGCTGGGATCCGGAGAATTTGCGCTTCTCCGNACAAGAGCCACAANACGGCCGATCGANT 477
                      *******************************  ********* **  **  ****     

consensus_5086#0      ---TTGCTGCGCGTCAAG-TGCTTG-AAGCT-GCGC-TGTCTGGT-GCTGAGC-GATGGT 503
consensus_5086#1      CTCTCGCTGCGCGTCAANGTGCTTGCAAGCTTGCGCCTGTCTGGTTGCTGANCCGATGGT 537
                         * ************  ****** ***** **** ******** ***** * ******

consensus_5086#0      CGC-TATTATGAAACGGTGAAGGCAAACTTTGAGCGTGCCGATCGTACGACTGTGGTCCG 562
consensus_5086#1      CGCCTACTATACTGACACNC-GGNGAACGGCACANACCTCTNTGGACCCGCTA-GCCCCG 595
                      *** ** ***           **  ***           *  * *  *  **  *  ***

consensus_5086#0      TACCACCACCAGCTGCCGTGTGTCGGCGTACCATGTGCTGAGCAACTACAACGACTTGGT 622
consensus_5086#1      CACTCCNCNCA------------------------------------------------- 606
                       **  *   **                                                 

consensus_5086#0      TTTCAACTGAACGAGCAGAACGGTACTGTCGGCTTCACCGTACCGATTGTCCATCAAAGG 682
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      GTGTGTGGTTTGTTACTAATCGTTACTAATTTTGAGACGCAGCTTGTTCGTTCGAAAGAG 742
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      AAGAACTTTCGTGTTTTTTTATTGT 767
consensus_5086#1      -------------------------