These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCATCAACCCGAAGGTGGGCGACTACATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGGCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTGGGCGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATCCGCAGTGTCGCGTTCCATCCGCGCTAT] [+] EMBL BX605583 [CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCATCAACCCGAAGGTGGGCGACTACATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGGCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTGGGCGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATCCGCAGTGTCGCGTTCCATCCGCGCTAT] consensusID : consensus_5094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTT-TTC-TTTG-TTCTTCTTCTTCTTCTTCCTCTTCCAGTTCTTCATCGCTG-TATCCTCCAGGTCG-CTTCATCTTCCTCCGTCACCTCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAA-AAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGC-GGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGCGA-CCAA-CGA-ACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGGGTGACAATCTGTGATCGGCACGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGACAAACCGTACCA] [+] EMBL AL930564 [CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTT TTC TTTG TTCTTCTTCTTCTTCTTCCTCTTCCAGTTCTTCATCGCTG TATCCTCCAGGTCG CTTCATCTTCCTCCGTCACCTCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAA AAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGC GGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGCGA CCAA CGA ACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGG ] [+] EMBL AL692620 [ CCCCCGAGGTTAATG CTGTTTTTTTTTTTTNCTCTTTTGCTTCTTCTTCTTCTTCTTCCTCTTCCAGTTCTTCATCGCTGCTATCCTCCAGGTCGCCTTCATCTTCCTCCGTCACCTCGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGGTGACGGAGGAGGAGAAGAAGCTGGGCGTGCGCATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTG CTGTTCGTGGCGACCCAACCGACACATCCGTGTGTACGATCTGGTGAAACAGTTGATGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGA G CATGGCGATTCATCCGAAGGGTGACAATCTGTGATCGGCACGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGACAAACCGTACCA] consensusID : consensus_5094#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATTCACTGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGTACAATGATTTACTGCAAAA] [+] EMBL AL697208 [TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGTGCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGCGTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAAGAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGCGACCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGTACCCGGGCTGCAAATGGATCTCGAGCATGGCGATCCATCCGAAGGGTGACAATCTGCTGATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTACCAGCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATTCACTGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGTACAATGATTTACTGCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5094#0 -----------------------CTGGTGGCCGCGGCGAGCGGTAAGCGCGTGCTGCTCA 37 consensus_5094#2 ------------------------------------------------------------ consensus_5094#1 CAAGAATCCCCCGAGGNAAATGCCTGGTTTTTTTTTTTTTCTTTGTTCTTCTTCTTCTTC 60 consensus_5094#0 TCAACCCGAAGGTGGGCGACTACATGCTGGTGAAGAAGACGGACGATCTGCTGACCGAGG 97 consensus_5094#2 ------------------------------------------------------------ consensus_5094#1 TTCCTCTTCCAGTTCTTCATCGCTGTATCCTCCAGGTCGCTTCATCTTCCTCCGTCACCT 120 consensus_5094#0 CGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGG 157 consensus_5094#2 ------------------------------------------------------------ consensus_5094#1 CGCCCCGGTCCGACACGGTCGACAGCGAGCGCATCCGGTCGGCGGTCCAGTGGGGCGAGG 180 consensus_5094#0 TGACGGAGGAGGAGAAGAAGCTGG--GCGTGCGGATCGTGATCACACACTTCCGCGAGGT 215 consensus_5094#2 TGCTCGAGCAGAATCGCCACGAGGTTANGTGCGGATCGTGATCACACACTTCCGCGAGGT 60 consensus_5094#1 TGACGGAGGAGGAGAAAAGCTGGG---CGTGCGCATCGTGATCACACACTTCCGCGAGGT 237 ** *** ** * ** ***** ************************** consensus_5094#0 GCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGC 275 consensus_5094#2 GCGCCAGGTGACGTGGCACGGGCGGGGCGACTACTTTGCCACCGTCATGCCGGACGGGGC 120 consensus_5094#1 GCGCCAGGTGACGTGGCACGGGCGGG-CGACTACTTTGCCACCGTCATGCCGGACGGGGC 296 ************************** ********************************* consensus_5094#0 GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTGCCGTTCTCGAA 335 consensus_5094#2 GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAA 180 consensus_5094#1 GTACCGGTCGGTGATGATCCACCAGCTGTCCAAGCGCCGGTCCCAGGTACCGTTCTCGAA 356 ************************************************ *********** consensus_5094#0 GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGC 395 consensus_5094#2 GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGTCTGTTCGTGGC 240 consensus_5094#1 GAGCAAGGGTTTGATACAGTGCGTGCTGTTCCATCCGATCAAGCCGTGCCTGTTCGTGGC 416 ************************************************ *********** consensus_5094#0 GACCCAACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGAT-GATGAAGAAGCTGT 454 consensus_5094#2 GACC-AACGACACATCCGCGTGTACGATCTGGTGAAACAGTTGATCGATGAAGAAGCTGT 299 consensus_5094#1 GACC-AACGA-ACATCCGTGTGTACGATCTGGTGAAACAGTTGAT-GATGAAGAAGCTGT 473 **** ***** ******* ************************** ************** consensus_5094#0 ACCCGGGCTGCAAATGGATCTCGAG--CATGGCGATCCATCCGAAGGGTGACAATCTGCT 512 consensus_5094#2 ACCCGGGCTGCAAATGGATCTCGAG--CATGGCGATCCATCCGAAGGGTGACAATCTGCT 357 consensus_5094#1 ACCCGGGCTGCAAATGGATCTCGACGCCATGGCGATTCATCCGAAGGGTGACAATCTG-T 532 ************************ ********* ********************* * consensus_5094#0 GATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTA 572 consensus_5094#2 GATCGGCACGTACGAGAAGCGGCTGATGTGGTTCGATCTGGACCTCTCGACCAAACCGTA 417 consensus_5094#1 GATCGGCACGTACGAGAAGCGGTGATGATGGTTCGATCTGGACCTCTCGAC-AAACCGTA 591 ********************** *********************** ******** consensus_5094#0 CCAGCAGCTGCGCATACACAATGCCGCCATCCGCAGTGTCGCGTTCCATCCG-CGCTAT- 630 consensus_5094#2 CCAGCAGCTGCGCATACACAATGCCGCCATTCGCAGTGTCGCGTTCCATCCGACGCTATT 477 consensus_5094#1 CCA--------------------------------------------------------- 594 *** consensus_5094#0 ------------------------------------------------------------ consensus_5094#2 CACTGTNTGCGTCCGCCGGCGACGATCGCAGNCGTGATCGTTNCACGAACGGTATGGTGT 537 consensus_5094#1 ------------------------------------------------------------ consensus_5094#0 ------------------- consensus_5094#2 ACAATGATTTACTGCAAAA 556 consensus_5094#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||