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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1005 fasta sequence
[TGCCCTGCAGGTTAATACAATTTCGTCATCCCACAAAACAATACGTTCGCTGCGATTACAACGTTTGGGATTGTAATTTACATCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATACGGTGGAAAGCATACAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGCAGCTTCGCGCAGCTCGATTACCAACAGTAAAGGATCTAACACCAGNGCTTACGGAACCGTCCGATCATACGCTCCTGGANGCCTGGTACAGTCATCTTGCTGGCGAAGCTGCTATCCAGTCCATCATAGATTCCCCGGNTACGCCCCAGCACATTTAAAGCTGAACNGCCGATCAGTAACTTGGCACCCGGAAACGGGAGAACNAGAACTGNGAGGATTGAGCCAACACGTCAGTAGTACCGTNCAGCTCGAGTAACGAGTGAGCTACACCAGAGGGCACCGNGACACACGAGTGACATTGTCAGGNATGCGGTCAGTNCAAAACAGACATATAGTGAAACCCAGACCAACTGNCGGAGCATATTGGCAAAACTATCAGCATGCATACGAACGGAGGTCGGGAAACCGNATGGTGGAAAGATTGAGGATCGACGAAACNAAACGCAANAGATGAGCGAATAANTACCAGCAGGCACAGCGCGGAAAGGNTAAGGAGCACCCCGTATACAGACAGAGAGTAAGANAGACTACACCCCCGNGANACGCCCCAGAGGCAAATATTAGGACCGGAANAGACACCGGNAACAAAGCAACCAAAATGGGAGGCATTGGGATGACAAAGGGGCACGANTGGGGAANAAGTGCAGGGAAAGCCAGACGACCNGGAGAGCACNANGACAACAAACAAAGAAACAGGAGGGATACAACACAANCCGAGTNAGACGGCACGACCNCAACGCAAGCTGNGAAAGACGNGGGACGANAACNNAGGGACAGG]
[+] EMBL AL693712 [TGCCCTGCAGGTTAATACAATTTCGTCATCCCACAAAACAATACGTTCGCTGCGATTACAACGTTTGGGATTGTAATTTACATCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATACGGTGGAAAGCATACAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGCAGCTTCGCGCAGCTCGATTACCAACAGTAAAGGATCTAACACCAGNGCTTACGGAACCGTCCGATCATACGCTCCTGGANGCCTGGTACAGTCATCTTGCTGGCGAAGCTGCTATCCAGTCCATCATAGATTCCCCGGNTACGCCCCAGCACATTTAAAGCTGAACNGCCGATCAGTAACTTGGCACCCGGAAACGGGAGAACNAGAACTGNGAGGATTGAGCCAACACGTCAGTAGTACCGTNCAGCTCGAGTAACGAGTGAGCTACACCAGAGGGCACCGNGACACACGAGTGACATTGTCAGGNATGCGGTCAGTNCAAAACAGACATATAGTGAAACCCAGACCAACTGNCGGAGCATATTGGCAAAACTATCAGCATGCATACGAACGGAGGTCGGGAAACCGNATGGTGGAAAGATTGAGGATCGACGAAACNAAACGCAANAGATGAGCGAATAANTACCAGCAGGCACAGCGCGGAAAGGNTAAGGAGCACCCCGTATACAGACAGAGAGTAAGANAGACTACACCCCCGNGANACGCCCCAGAGGCAAATATTAGGACCGGAANAGACACCGGNAACAAAGCAACCAAAATGGGAGGCATTGGGATGACAAAGGGGCACGANTGGGGAANAAGTGCAGGGAAAGCCAGACGACCNGGAGAGCACNANGACAACAAACAAAGAAACAGGAGGGATACAACACAANCCGAGTNAGACGGCACGACCNCAACGCAAGCTGNGAAAGACGNGGGACGANAACNNAGGGACAGG]
consensusID : consensus_5102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 908 fasta sequence
[GGCAGAATCGGCACGAGGAACGCAGCGGCGTACCAATTTCGTCATCCCACAAAACAATACGTTCGCTGCCGATTACAACG-TTTG-GGATTGTAATTTACCATCAAAACAG--AATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAAGGATCTAACACCAGCGCTTACGGAACCGTCCGATCATACGCTCCGCACGCCGTACAGTCATCTGCTGCCGAAGCGCTTCCAGTCCATCATAGATCCCCGCTCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAACGGGAGCAGACTGCAGCTTGACCAACGTCGTGTCGTCGCTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATTGTGACCCGCACTGCCGGAGGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCGGGTCGACGAAAAAGAAGTGACGATATTCGAGGACGCCGGCAGGTTGCACCCTTCGCAGGTAGCGATCCCGGTCGGCCGTGTATTGCCGTAGCCCGAAACCCATTGGGTGGCTTGGGTGAAAGGGAAGACNGGACAGCAAGGGAGGGAAAGTGTTGCCGGAGCCCGGAGACAAANTCGAGGCAGAGCAGGTTAGCAAATTCTTGGGCAGAGGCTTTCCAAACCNCGACCCTTNNAAAAGCCGGGAGGTCGCAAAAAGGCAGGAAACGCGCACCCCCAAAGCGCGGGAAATCACNGGGCACCGTGAGAAACNCTGTG]
[+] EMBL BX467798 [GGCAGAATCGGCACGAGGAACGCAGCGGCGTACCAATTTCGTCATCCCACAAAACAATACGTTCGCTGCCGATTACAACG TTTG GGATTGTAATTTACCATCAAAACAG AATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCAGCAGGATCCTCGCTCGCCTACACTGCACATCAACAGAAGCCCCATCAGTCAGGAGCAAGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAAGGATCTAACACCAGCGCTTACGGAACCGTCCGATCATACGCTCCGCACGCCGTACAGTCATCTGCTGCCGAAGCGCTTCCAGTCCATCATAGATCCCCGCTCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAACGGGAGCAGACTGCAGCTTGACCAACGTCGTGTCGTCGCTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATTGTGACCCGCACTGCCGGAGGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCGGGTCGACGAAAAAGAAGTGACGATATTCGAGGACGCCGGCAGGTTGCACCCTTCGCAGGTAGCGATCCCGGTCGGCCGTGTATTGCCGTAGCCCGAAACCCATTGGGTGGCTTGGGTGAAAGGGAAGACNGGACAGCAAGGGAGGGAAAGTGTTGCCGGAGCCCGGAGACAAANTCGAGGCAGAGCAGGTTAGCAAATTCTTGGGCAGAGGCTTTCCAAACCNCGACCCTTNNAAAAGCCGGGAGGTCGCAAAAAGGCAGGAAACGCGCACCCCCAAAGCGCGGGAAATCACNGGGCACCGTGAGAAACNCTGTG]
[+] EMBL CNS08UJS [ ATACGTTCGCTGCCGATTACAACGTTTTGTGGATTGTAATTTACCATCAAAACAGTAAATGGGTGCGTTAAACAGCAAAGTTTC ]
consensusID : consensus_5102#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[GATCCCCTGNGTTATACAACGCAGTGGTGTACAATTTCGTCTATTCCAGCAAAACAATACGTTCGCTGCCGATTACAAGCGTTATGGGATTGTAATTTACCAGTCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCTAGCTAGGATCCTCGCTCGCTCGTACACTGCTACATCAACAGAAGCCCCATCAGTCAGGAGCAATGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAATGGATCTAACACCAGCGCTTACGGAACCTGTCCTGATCATACGCTCCGCACTGCCGTACCAGTCATCTGCTGCCGAAGCGCTTCCAGATCCAGTCATAGATCCCCGCATCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAAGCGGGAGCAGACTGCAGCTTGACCAACGTCGCTGTCGTACGACTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATNNGTGACCCGACACTGCCGGAGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCNGGTCGACGAANNAAGAAGTGACGATATTCGAGGACGCCGAGGTTGCACCCTTCGCAAGTAGCGATCCCCGCTCGCCGTGTACTTGGCGTAGCCCAGACACCATGGTGCTGGTCNAANGAA]
[+] EMBL AL692826 [GATCCCCTGNGTTATACAACGCAGTGGTGTACAATTTCGTCTATTCCAGCAAAACAATACGTTCGCTGCCGATTACAAGCGTTATGGGATTGTAATTTACCAGTCAAAACAGAATGGGTGCGTTAAACAGCAAAGTTTCCCCATCGGTGGAAAGCATCAAGCAACAGGAAAATGGTACCCTAGCTAGGATCCTCGCTCGCTCGTACACTGCTACATCAACAGAAGCCCCATCAGTCAGGAGCAATGCCGGAGCTTCGCGCAGCTCGATTACCAAAGTAAATGGATCTAACACCAGCGCTTACGGAACCTGTCCTGATCATACGCTCCGCACTGCCGTACCAGTCATCTGCTGCCGAAGCGCTTCCAGATCCAGTCATAGATCCCCGCATCGCCCAGCACATTTAACCGAACGCCGATCGTACTGGACCCGGAAAGCGGGAGCAGACTGCAGCTTGACCAACGTCGCTGTCGTACGACTCGAGTACGAGGAGCTACACAGCGGCCCGGAAGAGGACATGCAGGATGCGTCGTTCAAAGATNNGTGACCCGACACTGCCGGAGATATGCAATCTTCAGATCGAATACGACGAGTCGGTACCGTTCGTGGAAGTTGCNGGTCGACGAANNAAGAAGTGACGATATTCGAGGACGCCGAGGTTGCACCCTTCGCAAGTAGCGATCCCCGCTCGCCGTGTACTTGGCGTAGCCCAGACACCATGGTGCTGGTCNAANGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5102#1 GGCAGAATCGGCACGAGGAACGCAGCGGCGTACCAATTTCGTC-ATCCCA-CAAAACAAT 58
consensus_5102#2 -GATCCCCTGNGTTATACAACGCAGTGGTGTAC-AATTTCGTCTATTCCAGCAAAACAAT 58
consensus_5102#0 ---------------TGCCCTGCAGGTTAATAC-AATTTCGTC-ATCCCA-CAAAACAAT 42
**** *** ********* ** *** *********
consensus_5102#1 ACGTTCGCTGCCGATTACAA-CGTT-TGGGATTGTAATTTACCA-TCAAAACAGAATGGG 115
consensus_5102#2 ACGTTCGCTGCCGATTACAAGCGTTATGGGATTGTAATTTACCAGTCAAAACAGAATGGG 118
consensus_5102#0 ACGTTCGCTGC-GATTACAA-CGTT-TGGGATTGTAATTTACA--TCAAAACAGAATGGG 97
*********** ******** **** **************** ***************
consensus_5102#1 TGCGTTAAACAGCAAAGTTTCCCCAT-CGGTGGAAAGCAT-CAAGCAACAGGAAAATGGT 173
consensus_5102#2 TGCGTTAAACAGCAAAGTTTCCCCAT-CGGTGGAAAGCAT-CAAGCAACAGGAAAATGGT 176
consensus_5102#0 TGCGTTAAACAGCAAAGTTTCCCCATACGGTGGAAAGCATACAAGCAACAGGAAAATGGT 157
************************** ************* *******************
consensus_5102#1 ACCC-AGC-AGGATCCTCGCTCGCC--TACACTGC-ACATC-AACAGAAGCCCCATCAGT 227
consensus_5102#2 ACCCTAGCTAGGATCCTCGCTCGCTCGTACACTGCTACATC-AACAGAAGCCCCATCAGT 235
consensus_5102#0 ACCC-AGC-AGGATCCTCGCTCGCC--TACACTGC-ACATCCAACAGAAGCCCCATCAGT 212
**** *** *************** ******** ***** ******************
consensus_5102#1 CAGGAGCAA-GCCGGAGCTTCGCGCAGCTCGATTACCAA-AGTAAA-GGATCTAACACCA 284
consensus_5102#2 CAGGAGCAATGCCGGAGCTTCGCGCAGCTCGATTACCAA-AGTAAATGGATCTAACACCA 294
consensus_5102#0 CAGGAGCAAGCCGGCAGCTTCGCGCAGCTCGATTACCAACAGTAAA-GGATCTAACACCA 271
********* * * ************************ ****** *************
consensus_5102#1 GCGCTTACGGAACC-GTCC-GATCATACGCTCCGCAC-GCC--GTAC-AGTCATCT-GCT 337
consensus_5102#2 GCGCTTACGGAACCTGTCCTGATCATACGCTCCGCACTGCC--GTACCAGTCATCT-GCT 351
consensus_5102#0 GNGCTTACGGAACC-GTCC-GATCATACGCTCCTGGANGCCTGGTAC-AGTCATCTTGCT 328
* ************ **** ************* *** **** ******** ***
consensus_5102#1 GCCGAAGC-GCTTCCAG-TCCA-TCATAGATCCCC--GC-TCGCCC-AGCACATTTAA-- 388
consensus_5102#2 GCCGAAGC-GCTTCCAGATCCAGTCATAGATCCCC--GCATCGCCC-AGCACATTTAA-- 405
consensus_5102#0 GGCGAAGCTGCTATCCAGTCCA-TCATAGATTCCCCGGNTACGCCCCAGCACATTTAAAG 387
* ****** *** * **** ******** *** * ***** ***********
consensus_5102#1 CCGAACG-CCGATC-GTA--CTGG-ACCCGGAAA-CGGGAGCA----GACTGCA--GCTT 436
consensus_5102#2 CCGAACG-CCGATC-GTA--CTGG-ACCCGGAAAGCGGGAGCA----GACTGCA--GCTT 454
consensus_5102#0 CTGAACNGCCGATCAGTAACTTGGCACCCGGAAA-CGGGAGAACNAGAACTGNGAGGATT 446
* **** ****** *** *** ********* ****** * **** * **
consensus_5102#1 GA-CCAAC--GTCG----TGTCGTC--GCTCGAGTA-CGAG-GAGCTACAC---AGCGGC 482
consensus_5102#2 GA-CCAAC--GTCGC---TGTCGTACGACTCGAGTA-CGAG-GAGCTACAC---AGCGGC 503
consensus_5102#0 GAGCCAACACGTCAGTAGTACCGTNCAGCTCGAGTAACGAGTGAGCTACACCAGAGGGCA 506
** ***** *** * *** ******** **** ********* ** *
consensus_5102#1 CCGGAA-----GAG-GACATGC---AGGATGCG-TCGTTCAAAGAT-------TG-TGA- 523
consensus_5102#2 CCGGAA-----GAG-GACATGC---AGGATGCG-TCGTTCAAAGAT-------NNGTGA- 545
consensus_5102#0 CCGNGACACACGAGTGACATTGTCAGGNATGCGGTCAGTNCAAAACAGACATATAGTGAA 566
*** * *** ***** * ***** ** * ** * ***
consensus_5102#1 --CCCG-C--ACTGCCGGAGGATAT----GCAATCTTCAGATCGAATACGAC---GAGTC 571
consensus_5102#2 --CCCGAC--ACTGCCGGAG-ATAT----GCAATCTTCAGATCGAATACGAC---GAGTC 593
consensus_5102#0 ACCCAGACCAACTGNCGGAGCATATTGGCAAAACTATCAGCATGCATACGAACGGAGGTC 626
** * * **** ***** **** ** **** * ****** ***
consensus_5102#1 GGTA--CCGT-TCGTGGAAG--TTGCGGGTCGACGAAAAA-GAAGTGAC-GATATTCGAG 624
consensus_5102#2 GGTA--CCGT-TCGTGGAAG--TTGCNGGTCGACGAANNAAGAAGTGAC-GATATTCGAG 647
consensus_5102#0 GGGAAACCGNATGGTGGAAAGATTGAGGATCGACGAAACNAAACGCAANAGATGAGCGAA 686
** * *** * ****** *** * ******** * * * *** ***
consensus_5102#1 GA-----------------CGCCGGCAGGTT-----GCACCC--TTCGCAGGTAGCGATC 660
consensus_5102#2 GA-----------------CGCCG--AGGTT-----GCACCC--TTCGCAAGTAGCGATC 681
consensus_5102#0 TAANTACCAGCAGGCACAGCGCGGAAAGGNTAAGGAGCACCCCGTATACAGACAGAGAGT 746
* *** * *** * ****** * ** ** **
consensus_5102#1 CCGGTCGGCCGTGTA-TTGCCGTA-GCCCGAAACCCATTGGGTGGCTTGGGTGAAAGGGA 718
consensus_5102#2 CCCGCTCGCCGTGTACTTGGCGTA-GCCCAGACACCATGGTGCTGGTCNAANGAA----- 735
consensus_5102#0 AAGANAGACTACACCCCCGNGANACGCCCCAGAGGCAAATATTAGGACCGGAANAGACAC 806
* * * **** ** * *
consensus_5102#1 AGACNGGACAGCAA--GGGAGGGAAAGTGTTGCCGGAGCCCGGAGACAAANTCGAGGCAG 776
consensus_5102#2 ------------------------------------------------------------
consensus_5102#0 CGGNAACAAAGCAACCAAAATGGGAGGCATTGGGATGACAAAGGGGCACGANTGGGGAAN 866
consensus_5102#1 AGCAGGTTAGCAAATTCTTGGGC--AGAGGCTTTCCAAACCNCGACCCTTNNAAAAGCCG 834
consensus_5102#2 ------------------------------------------------------------
consensus_5102#0 AAGTGCAGGGAAAGCCAGACGACCNGGAGAGCACNANGACAACAAACAAAGAAACAGGAG 926
consensus_5102#1 GGAGGTCGCAAAAAGGCAGGAAACGCGCACCCCCAAAGCGCGGGAAATCACNGGGCACCG 894
consensus_5102#2 ------------------------------------------------------------
consensus_5102#0 GGATACAACACAANCCGAGTNAGACGGCACGACCNCAACGCAAGCTGNGAAAGACGNGGG 986
consensus_5102#1 TGAGAAACNCTGTG----- 908
consensus_5102#2 -------------------
consensus_5102#0 ACGANAACNNAGGGACAGG 1005
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||