These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1333 fasta sequence [GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCTCGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAAGCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGAAACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTACGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCAAAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAGTAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGATAGTTCTGTGCCATCAGCATTGCGAGAGCTGGCTGTTACTGTAATTTGCAATTAATCGAGTGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAACACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGTCACGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACGGATAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGATTTCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAAACAAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATTGCGCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTAGTTATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAGGACGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGTCAGTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATTAAGAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAATGGGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAGCCCAACTTAAGCTGT] [+] EMBL BX612540 [GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCTCGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAAGCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGAAACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTACGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCAAAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAGTAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGATAGTTCTGTGCCATCAGCATTGCGAGAGCTGGCTGTTACTGTAATTTGCAATTAATCGAGTGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAACACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGTCACGTAAGGCTAAGCGCAATCC ] [+] EMBL BX617845 [ CGACACATCTGCAGCACGAACACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAAT AAACACGATGGTCACGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACGGATAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGATTTCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAAACAAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATTGCGCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTAGTTATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAGGACGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGTCAGTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATTAAGAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAATGGGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAGCCCAACTTAAGCTGT] consensusID : consensus_5104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [CGCGGACGACGAGGGGGGTGCAATCGACACAGAGAGTCCGGTGCCATCAGCATAGCGAGAGCGGGCGGTTACTGTAATTTGCAAGTAATCGAGGGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCGGCAAATCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTCCCGCGAGGCGGACGACACATCTGCAGCACGAACAC] [+] EMBL BX607917 [CGCGGACGACGAGGGGGGTGCAATCGACACAGAGAGTCCGGTGCCATCAGCATAGCGAGAGCGGGCGGTTACTGTAATTTGCAAGTAATCGAGGGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCGGCAAATCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTCCCGCGAGGCGGACGACACATCTGCAGCACGAACAC] consensusID : consensus_5104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GTCAGTCGGAAGTGAATAAAGAAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAATTAAGAAACGCAAACGTTTTACAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAAAAAGGGATAGCACGAGCACGGAATAAAGCAAAAGGCAAACGCAAAGGGGGGACATATTTTAG] [+] EMBL BX613219 [GTCAGTCGGAAGTGAATAAAGAAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAATTAAGAAACGCAAACGTTTTACAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAAAAAGGGATAGCACGAGCACGGAATAAAGCAAAAGGCAAACGCAAAGGGGGGACATATTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5104#0 GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCT 60 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 CGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAA 120 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 GCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGA 180 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 AACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTA 240 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 CGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCA 300 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 AAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAG 360 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 TAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGAT 420 consensus_5104#1 --------------------------CGCGGACGACGAGGGGGGTGCAATCGACACAGAG 34 consensus_5104#2 --------------------------------------GTCAGTCGGAAGTGA-ATAAAG 21 * * * ** ** * * consensus_5104#0 AGTTCTGTGCCATCAGCATTGCGAGAGC--TGGCTGTTACTGTAATTTGCAATTAATCGA 478 consensus_5104#1 AGTCCGGTGCCATCAGCATAGCGAGAGC--GGGCGGTTACTGTAATTTGCAAGTAATCGA 92 consensus_5104#2 AAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAATTAAGAAACGCAAACGTTTTA 81 * * * ** ** * * * * * * **** * * consensus_5104#0 GTGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGC 538 consensus_5104#1 GGGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCGGCAAATCTTTCGC 152 consensus_5104#2 CAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAAAAAGGG----ATAGCACGAGC 137 * ** *** * ** ** ** * * *** ** * * * ** consensus_5104#0 TTCCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAA 598 consensus_5104#1 TTCCATTCAGCCAGAAGCTGTGACAGTCCCGCGAGGCGGACGACACATCTGCAGCACGAA 212 consensus_5104#2 ACGGAATAAAGCAAAAG-----GCAAACGCAAAGGGGGGAC-ATATTTTAG--------- 182 * * * ** *** ** * ** **** * * * * consensus_5104#0 CACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCC 658 consensus_5104#1 CAC--------------------------------------------------------- 215 consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 CTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGT 718 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 CACGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACG 778 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 GATAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGA 838 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 TTTCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAA 898 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 ACAAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATT 958 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 GCGCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTA 1018 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 GTTATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAG 1078 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 GACGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGT 1138 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 CAGTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATT 1198 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 AAGAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAA 1258 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 TGGGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAG 1318 consensus_5104#1 ------------------------------------------------------------ consensus_5104#2 ------------------------------------------------------------ consensus_5104#0 CCCAACTTAAGCTGT 1333 consensus_5104#1 --------------- consensus_5104#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||