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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence
[CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGACGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCAGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTCCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACACTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTGACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACCAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNCACAACTC]
[+] EMBL AL692968 [CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGACGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCAGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTCCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACACTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTGACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACCAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNCACAACTC]
[+] EMBL BX609776 [ aaGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAA AACAA AACAGAAACCAT AAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAA AA AAAATCCCCAAA CTACCACTAATTACCACCACTAG CCG TGGAATCGCGGAGTGTCCGTGTGT TAG T TAGGACGTTCGA TAAGTTACAAGTGTAGCTGGAGT GTGTGCTGGGGGGAAAACA A AACAGCAGCGGCGCA ]
consensusID : consensus_5106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTGAAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTCGACTAAGTTACAACGT]
[+] EMBL AL934690 [CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTGAAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTCGACTAAGTTACAACGT]
consensusID : consensus_5106#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAAAATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAAAAACCCCAAACTACCACTAATTACCACCAC]
[+] EMBL BX614133 [GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAAAATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAAAAACCCCAAACTACCACTAATTACCACCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5106#1 CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTG 60
consensus_5106#2 -------------------------GAAGAAAAAAACAGACAA--GAAGATAAAAACAAA 33
consensus_5106#0 ----------------------------------------------------CCCCCGNG 8
consensus_5106#1 AAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT 120
consensus_5106#2 ACGA-TTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT 92
consensus_5106#0 GTTAATT--AGCTAATTGGAATGCGCTTT-GTTTTTTCTTTGTATATACAAATCGTTGAT 65
* ** ******************** ******************************
consensus_5106#1 CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA 180
consensus_5106#2 CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTA 152
consensus_5106#0 CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA 125
************************************************** *********
consensus_5106#1 CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 240
consensus_5106#2 CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 212
consensus_5106#0 CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 185
************************************************************
consensus_5106#1 TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 300
consensus_5106#2 TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 272
consensus_5106#0 TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 245
************************************************************
consensus_5106#1 TTAAG-AATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 359
consensus_5106#2 TTAAG-AATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 331
consensus_5106#0 TTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 305
**** ******************************************************
consensus_5106#1 GATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTT 419
consensus_5106#2 GATGAAAAAAAACAAAACAGAAA----CCATAAAATATATAA-TATACTCTACGCTTTT- 385
consensus_5106#0 GATGAAAAAANAACAACAACAGAAAC-CATCAAAATATATGA-TATACTCTACGCTTTT- 362
********** * ** * * * * * * ***** * ************* **
consensus_5106#1 ACGACGATTATTAATGCTGCAGCAAAACAAATACAACAA-AAAATCCCCAAAC-TACCAC 477
consensus_5106#2 ACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAA-AAA--CCCCAAAC-TACCAC 441
consensus_5106#0 ACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCAC 422
***** ****************************** ** *** ******** ******
consensus_5106#1 TAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTA-CTTCAGGA 536
consensus_5106#2 TAATTACCACCAC----------------------------------------------- 454
consensus_5106#0 TAATTACCACCACTAGCCCGCTGGAATCGCG---GAGTGTCCGTGTGTACAGCTNTAGGA 479
*************
consensus_5106#1 CGT-CGACTAAGTTACAA-CGT-------------------------------------- 556
consensus_5106#2 ------------------------------------------------------------
consensus_5106#0 CGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGC 539
consensus_5106#1 ------------------------------------------------------------
consensus_5106#2 ------------------------------------------------------------
consensus_5106#0 AGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTT 599
consensus_5106#1 ------------------------------------------------------------
consensus_5106#2 ------------------------------------------------------------
consensus_5106#0 CCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACA 659
consensus_5106#1 ------------------------------------------------------------
consensus_5106#2 ------------------------------------------------------------
consensus_5106#0 CTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCT 719
consensus_5106#1 ------------------------------------------------------------
consensus_5106#2 ------------------------------------------------------------
consensus_5106#0 GACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAAC 779
consensus_5106#1 ------------------------------------------------------------
consensus_5106#2 ------------------------------------------------------------
consensus_5106#0 CAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCN 839
consensus_5106#1 --------
consensus_5106#2 --------
consensus_5106#0 CACAACTC 847
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||