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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1539 fasta sequence
[TGGATTTGAACCTTTCTGCGGACAGCAAACAATCGGAAAAGCTTTCCTCCTTGCTAGAAGATTAGAAAACGCGGAAGTGATGTGGAGTTAAAAGGGGGTTTTCCAAACACCCAGAAGTGCAGAAGCAGCGTCGAGATTGGTTAGCGATGGATTTGATTTTAGTTAGTGTAACAACAGAACCAACGAGCAGGAAACTTGTTTTCTGTTCAAACGACGTGTAACTTGCTGCTGGCTGCTACTTTCACATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAGGGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACAAAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACTTTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGTGCAATGTTCCACGCCTGTCCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGTTTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCGGGAAGTGGTGTATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAAGTGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGTTCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCCGGACGGATCCGCTCAGCCTGACGCTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTAAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCCTCTGACGGTGGAGGAGTTTTCCCACGTGCAAACGACCGATCTGGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGGAAAGCGGATCGGGGTGAACTGCTGTCGTACGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAGCATCGACACTGTTTACGCTGGCCGATGCAAACAAGGATAAGAAGCTGCTGATGCATGAGATGCTGGCCAAATCGGCAATATTCATATCGTCGAAAATGGTGCACACTGCGGAAAGTTTTCATGATGAGTTTTAAGTAGCACCGTAAAGTGCGAGCAATCAACGTTCCTTGCTTCGGAAGTGATCGACATATCTGTGAAATAAATGTGTTGTGTTTGTTTTAAAGGAA]
[+] EMBL CNS09PN5 [TGGATTTGAACCTTTCTGCGGACAGCAAACAATCGGAAAAGCTTTCCTCCTTGCTAGAAGATTAGAAAACGCGGAAGTGATGTGGAGTTAAAAGGGGGTTTTCCAAACACCCAGAAGTGCAGAAGCAGCGTCGAGATTGGTTAGCGATGGATTTGATTTTAGTTAGTGTAACAACAGAACCAACGAGCAGGAAACTTGTTTTCTGTTCAAACGACGTGTAACTTGCTGCTGGCTGCTACTTTCACATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAGGGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACAAAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACTTTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGTGCAATGTTCCACGCCTGTCCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGTTTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCGGGAAGTGGTGTATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAAGTGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAG ]
[+] EMBL BX606226 [ ATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAGGGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACAAAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACTTTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGCGCAATGTTCCACGCCTGTCCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGTTTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCCGGAAGTGGTGTATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAAGCGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCCGGACGGTCTGGTGA ]
[-] EMBL CNS09PN6 [ AGCGTTCGCGAAGGCCCACACAAATGGCAACAAGCATCTGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTTAAATACGCGAAAACATCGACGAAGCGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCCCGGGACGGTCTGGTGAGCT GGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGTTCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCCGGACGGATCCGCTCAGCCTGACGCTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTAAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCCTCTGACGGTGGAGGAGTTTTCCCACGTGCAAACGACCGATCTGGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGGAAAGCGGATCGGGGTGAACTGCTGTCGTACGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAGCATCGACACTGTTTACGCTGGCCGATGCAAACAAGGATAAGAAGCTGCTGATGCATGAGATGCTGGCCAAATCGGCAATATTCATATCGTCGAAAATGGTGCACACTGCGGAAAGTTTTCATGATGAGTTTTAAGTAGCACCGTAAAGTGCGAGCAATCAACGTTCCTTGCTTCGGAAGTGATCGACATATCTGTGAAATAAATGTGTTGTGTTTGTTTTAAAGGAA]
consensusID : consensus_5107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[CCCCGAGGTTNATACGCGAACACATGACGAAGCGATCGNACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGATCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCGGACGGATCCGCTCAGCCTGACGCTTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTCAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCATCTGACGGTGGAGGAGTTTTCCGACGTGCAAACGACCGATCTTGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGTAAAGCGGATCGGGGTGAGCTGCTGTCGTACAGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAG]
[+] EMBL AL692969 [CCCCGAGGTTNATACGCGAACACATGACGAAGCGATCGNACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGGTGAGCTGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGGCATCCAGGGGGACAGCCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGATCGCACGTGACAAAGCGCACTGGATGGAGGCGGCCGGACGGATCCGCTCAGCCTGACGCTTGGACGAGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTCAATCTCGTCGACGACATACTGCGACAGTTTGACGTGGACGGCGATGACCATCTGACGGTGGAGGAGTTTTCCGACGTGCAAACGACCGATCTTGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCGAGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGTAAAGCGGATCGGGGTGAGCTGCTGTCGTACAGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5107#0 TGGATTTGAACCTTTCTGCGGACAGCAAACAATCGGAAAAGCTTTCCTCCTTGCTAGAAG 60
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 ATTAGAAAACGCGGAAGTGATGTGGAGTTAAAAGGGGGTTTTCCAAACACCCAGAAGTGC 120
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 AGAAGCAGCGTCGAGATTGGTTAGCGATGGATTTGATTTTAGTTAGTGTAACAACAGAAC 180
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 CAACGAGCAGGAAACTTGTTTTCTGTTCAAACGACGTGTAACTTGCTGCTGGCTGCTACT 240
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 TTCACATTTTAACTGCTCTCTGTGTGTCTGTGTGTGTGTGTGTCTGGGGGTGGCGCAAAG 300
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 GGGCGCGCTCGTATAGAGCAGAGCGAGAAGAGCAAAACAAAAAACGCAAAACGCAAAACA 360
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 AAAGTAAAAGTTTTATCTTCCTCACATCGTTTCGCGTTGGAAATTGCGGTTCGTTGTACT 420
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 TTCGCTGCGGAAATCCGATGGCCAAACCGGCAAAGTTCTTGTGCAATGTTCCACGCCTGT 480
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 CCACGCTGTTCCCGCTGGTGCTGTACGTGCTGTTCATACTCTGCATACTAGTGTTGGCGT 540
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 TTTCCTCCCGCAGCCACAGCGATGGAAAGGGTCAAAAGACGGAACAAGCGGGAAGTGGTG 600
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 TATCGAGCAACGAGAGCCCGAATGGGCCCGCCCCGCTCGTTTACCGGAAGCTGGAGGAAA 660
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 GTGTGGTAAAGGAGCTGACGGAAGCGTTCGCGAAGGCCGACACAAATGGCGACAAGCATC 720
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 TGACCGTGCAGGAGTTGGCAAAGTTCATTAACTTTAAGATACGCGAACACATCGACGAAG 780
consensus_5107#1 -------------------------CCCCGAGGTTNA--TACGCGAACACAT-GACGAAG 32
* * ** * ************* *******
consensus_5107#0 CGATCCGCACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGG 840
consensus_5107#1 CGATC-GNACCAATCCGATCATGTTCGTCGAGATCGACCACAAACCGCGGGACGGTCTGG 91
***** * ****************************************************
consensus_5107#0 TGAGCTGGGGACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGG-CATCCAGGGGGACAG 899
consensus_5107#1 TGAGCTGGG-ACGAGTACCAGGGCTACTGGTTGCGCGGGCAGGGGCATCCAGGGGGACAG 150
********* ********************************** ***************
consensus_5107#0 CCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGTTCGCACG 959
consensus_5107#1 CCACATGAAGAAGAGCGCATTCGACAAGCTGGACCGGAAGGTGAAGGAATCGATCGCACG 210
**************************************************** *******
consensus_5107#0 TGACAAAGCGCACTGGATGGAGGCGGCCCGGACGGATCCGCTCAGCCTGACGCT-GGACG 1018
consensus_5107#1 TGACAAAGCGCACTGGATGGAGGCGGCC-GGACGGATCCGCTCAGCCTGACGCTTGGACG 269
**************************** ************************* *****
consensus_5107#0 AGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTAAATCTCGTCGACG 1078
consensus_5107#1 AGTTTCTTTCCTTTCGCCATCCGGAATCGAGCACCGTCAACTTGCTCAATCTCGTCGACG 329
********************************************** *************
consensus_5107#0 ACATACTGCGACAGTTTGACGTGGACGGCGATGACCCTCTGACGGTGGAGGAGTTTTCCC 1138
consensus_5107#1 ACATACTGCGACAGTTTGACGTGGACGGCGATGACCATCTGACGGTGGAGGAGTTTTCCG 389
************************************ **********************
consensus_5107#0 ACGTGCAAACGACCGATCTGGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCG 1198
consensus_5107#1 ACGTGCAAACGACCGATCTTGGCGAGGGTAAAAAGTTTATCCTTTCGCAGAACGTGCGCG 449
******************* ****************************************
consensus_5107#0 AGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGGAAAGCGGATCGGG 1258
consensus_5107#1 AGCGGAGGGAAGAGTTCACGAAGGTGATCGACAAAAATCGGGACGGTAAAGCGGATCGGG 509
********************************************** *************
consensus_5107#0 GTGAACTGCTGTCGTAC-GTTGATCCGAGACATCCGCGCTATGCAATACAGGAAGCATCG 1317
consensus_5107#1 GTGAGCTGCTGTCGTACAGTTGATCCGAGACATCCGCGCTATGCAATACAGGAAG----- 564
**** ************ *************************************
consensus_5107#0 ACACTGTTTACGCTGGCCGATGCAAACAAGGATAAGAAGCTGCTGATGCATGAGATGCTG 1377
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 GCCAAATCGGCAATATTCATATCGTCGAAAATGGTGCACACTGCGGAAAGTTTTCATGAT 1437
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 GAGTTTTAAGTAGCACCGTAAAGTGCGAGCAATCAACGTTCCTTGCTTCGGAAGTGATCG 1497
consensus_5107#1 ------------------------------------------------------------
consensus_5107#0 ACATATCTGTGAAATAAATGTGTTGTGTTTGTTTTAAAGGAA 1539
consensus_5107#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||