These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1096 fasta sequence [GCAGATCCCCCNAGTTATCAGGTGGGGTGAT-AGCGGCA-CGCTTAATCCTNGCCCTCGTTTGCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTCAAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAATCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCACCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAACAA-CCGAACGTAGTTCGCAGTGCCATAACGAAGAAGCAGGCGTTCCTGCGCTCCAAAGGACTGTCGGAGGATGAGATACAGATTGCGTGCGAGCGAGCGGGCGTCTTTACGACCAGCCCCACACAACAGACGGTCATCAGCATGGGTGTGGAGTCGAGTGGTGGCGGTAACTATGCCAAGCCCGGTTACCAAATTCAGCCAAGGCAAAACTTCCTTACCCGCATGAAGGACATGCTCAGCTCGGTGGCCCTACTGAGCGGACTGATGTATGGCGTGTACTTGTTCTATAAGAAATTCATTGAACCGCTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAGCTTAATCAGACGATGACNGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAGGGCGAACTGAACCAGGTAAACCAANCC-ATGCGACCGTAAAGGAGCTGGCCAACTTTAAGGGCGATCTTGATTCGATTAAGGGACTCCTATTGAACAGAAAACAATTCGCCGCACCAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCTACGTTCCCAGCAACATCAACCGGCCAGCAGCGAGGGCGAGCACGACAAGCACGACGACAACGACACCGGATCGGGTTCTGGGTCGAGTGAAAATGATGTCGTCCTGAAGAACAGCGACAGCAGCCTGGAGATTATATCTTAAACGGTCGAACAATGTGAATGCACCGCACTGCTGGAGAGGAGTGAACCTTCCGGGGGAGGAGTGAACAACAACCGCCGTACG] [+] EMBL AL692997 [GCAGATCCCCCNAGTTATCAGGTGGGGTGAT AGCGGCA CGCTTAATCCTNGCCCTCGTTTGCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTCAAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAATCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCACCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAACAA CCGAACGTA ] [+] EMBL BX627784 [ GGGGTGATAAGCGGCACCGCTTAATCCTCGCCCTCGTTTGCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTCAAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAATCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCACCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAACAACCCGAACGTAGTTCGCAGTGCCATAACGAAGAAGCAGGCGTTCCTGCGCTCCAAAGGACTGTCGGAGGATGAGATACAGATTGCGTGCGAGCGAGCGGGCGTCTTTACGACCAGCCCCACACAACAGACGGTCATCAGCATGGGTGTGGAGTCGAGTGGTGGCGGTAACTATGCCAAGCCCGGTTACCAAATTCAGCCAAGGCAAAACTTCCTTACCCGCATGAAGGACATGCTCAGCTCGGTGGCCCTACTGAGCGGACTGATGTATGGCGTGTACTTGTTCTATAAGAAATTCATTGAACCGCTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAGCTTAATCAGACGATGACNGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAGGGCGAACTGAACCAGGTAAACCAANCC ATGCGACCGTAAAGG ] [+] EMBL BX623075 [ GAAATTCATTGAACCGNTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAGCTTAATCAGACGATGACGGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAGGCCGAACTGAACCAGGTAAACCAAACCAATGCGACCGTAAAGGAGCTGGCCAACTTTAAGGGCGATCTTGATTCGATTAAGGGACTCCTATTGAACAGAAAACAATTCGCCGCACCAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCTACGTTCCCAGCAACATCAACCGGCCAGCAGCGAGGGCGAGCACGACAAGCACGACGACAACGACACCGGATCGGGTTCTGGGTCGAGTGAAAATGATGTCGTCCTGAAGAACAGCGACAGCAGCCTGGAGATTATATCTTAAACGGTCGAACAATGTGAATGCACCGCACTGCTGGAGAGGAGTGAACCTTCCGGGGGAGGAGTGAACAACAACCGCCGTACG] consensusID : consensus_5109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence [GCAGAATGCCCGAGGTTTACGTAAAGGAGCTGGCCAACTTTAAGTGGCGATCTTGTATTCGATTAAGTGGACTCCTATTGAACAGAAAACAATTCGCCGACAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCCTACGGTTTCCCCAGCCAACCAATTCAAACCGGGCCAAGCAAGCGAAGGGCGAAGCACCGAAAAAGCCAACCGGACGGAACAAACGGACCANCCGGGAATTCGGGGTTTCCTGGGGTTCNGAGTTGACACAACTTGATTGTTCCGTCCCTTGAAAGAAACCAAGGCGAACCAAGGGCAAGGCCCTTGGAACGGAATTAAGGCATTAATTCTTTTACACACACCGGGGTTCCGGAAACCAAAAGTGGTTGANAANTTTGCACCCGGAACCTTGGGCTTGGGAACGAAGCGGACGGTTGAAANACCCTTTTTCCCGGGGGTCGGGAACGGNGGAACGTTGGAAACCAAAACAAAACCCCGGGCCGGTAACCGCAAACACGGGGAAATGACTGGGCCGGCCAATTTTCCTTAAAACAACGCCCGAACAACATAACCAAGGAAAAAGCCTGGAGGTTCACCCAACCTGGAGGGTTTGGTCGGCTTTGCGCCCAACCGTTCTCTCGGTTACACAACAAAGCGGNGGGCCCCCAAATTCCCTTAATTTTTTTNACAACCAAAGCCCTGGATTAAACGACCANTTTCATCTTTCATGGGGAACNCGGAAACTTTTTAACTTTGGTGGGCCCACAACAAGGCTGGCAAACACGCGGGGTCCTGGGAAAGAGCCCGGCACAACTTTGGGAAATTTCCAAACCAAATTGGGAAAAAAAAACCGCCCCGGAAAGAACATCACGCGCCCNGGGAACGTAGCCAACCAACTTTTCTTTACAGGGCACTTTGGTGCACAACAAGGCGGCGAAATCTTTAACTTTNAATACATTTCCCGNAAGTTTTCATTTCCCAAAATNAGAAGTCTTCCCGTGAGTATGGNGCCCACAACATTAATTNNGGATTTTGGG] [+] EMBL AL696411 [GCAGAATGCCCGAGGTTTACGTAAAGGAGCTGGCCAACTTTAAGTGGCGATCTTGTATTCGATTAAGTGGACTCCTATTGAACAGAAAACAATTCGCCGACAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCCTACGGTTTCCCCAGCCAACCAATTCAAACCGGGCCAAGCAAGCGAAGGGCGAAGCACCGAAAAAGCCAACCGGACGGAACAAACGGACCANCCGGGAATTCGGGGTTTCCTGGGGTTCNGAGTTGACACAACTTGATTGTTCCGTCCCTTGAAAGAAACCAAGGCGAACCAAGGGCAAGGCCCTTGGAACGGAATTAAGGCATTAATTCTTTTACACACACCGGGGTTCCGGAAACCAAAAGTGGTTGANAANTTTGCACCCGGAACCTTGGGCTTGGGAACGAAGCGGACGGTTGAAANACCCTTTTTCCCGGGGGTCGGGAACGGNGGAACGTTGGAAACCAAAACAAAACCCCGGGCCGGTAACCGCAAACACGGGGAAATGACTGGGCCGGCCAATTTTCCTTAAAACAACGCCCGAACAACATAACCAAGGAAAAAGCCTGGAGGTTCACCCAACCTGGAGGGTTTGGTCGGCTTTGCGCCCAACCGTTCTCTCGGTTACACAACAAAGCGGNGGGCCCCCAAATTCCCTTAATTTTTTTNACAACCAAAGCCCTGGATTAAACGACCANTTTCATCTTTCATGGGGAACNCGGAAACTTTTTAACTTTGGTGGGCCCACAACAAGGCTGGCAAACACGCGGGGTCCTGGGAAAGAGCCCGGCACAACTTTGGGAAATTTCCAAACCAAATTGGGAAAAAAAAACCGCCCCGGAAAGAACATCACGCGCCCNGGGAACGTAGCCAACCAACTTTTCTTTACAGGGCACTTTGGTGCACAACAAGGCGGCGAAATCTTTAACTTTNAATACATTTCCCGNAAGTTTTCATTTCCCAAAATNAGAAGTCTTCCCGTGAGTATGGNGCCCACAACATTAATTNNGGATTTTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5109#0 GCAGATCCCCCNAGTTATCAGGTGGGGTGATAGCGGCACGCTTAATCCTNGCCCTCGTTT 60 consensus_5109#1 GCAGAATGCCCGAGGTTTACGTAAAGGAGCTGGC--CAACTTTAAGTGGCGATCTTGTAT 58 ***** *** ** * * * ** * * ** ** **** * ** ** * consensus_5109#0 GCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTC 120 consensus_5109#1 TCGATTAAGTGGACTCCTATTGAACAG----AAAACAATTCGC--CGACAAACCT---TC 109 * * * * * *** * * **** ** ** * ** consensus_5109#0 AAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAA 180 consensus_5109#1 CGG--TCGTTCCACCGTCCATCCCGGCATGGCAGCCTACGGT--TTCCCCAGCCAACCAA 165 * * * * * ** * * **** * **** * * * * ** consensus_5109#0 TCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCA 240 consensus_5109#1 TTCAAACCGG-GCCAAGCAA-GCGAAGGGCGA-------AGCACCGAAAAAGCCAACCGG 216 * *** * * *** *** ** ** ***** ** *** consensus_5109#0 CCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAAC 300 consensus_5109#1 ACGGAACAAACGG-ACCANC-CGGGAAT------TCGGGGTTTCC-TGGGGTTCNGAGTT 267 * * * * ** *** * ****** *** * * ** * **** consensus_5109#0 AACCGAACGTAGTT-CGCAGTGCCATAACGAAGAAGCAGGCGTTCCTGCGCTCCAAAGGA 359 consensus_5109#1 GACACAACTTGATTGTTCCGTCCCTTGAAAGAAACCAAGGCGAACCAAGGG--CAAGGCC 325 ** *** * ** * ** ** * * * * ***** ** * *** * consensus_5109#0 CTGTCGGAGGA--TGAGATACAGATTGCGTGCGAGCGAGCGGGCGTCTTTACGACCAGCC 417 consensus_5109#1 CTTGGAACGGAATTAAGGCATTAATT-CTTTTACACACACCGGGGTTCCGGAAACCAAAA 384 ** *** * ** * *** * * * * ** ** **** consensus_5109#0 CCACACAACAGACGGTCATCAGCATGGGTGTGGAGTCGAGTGGTGGCGGTAACTATGCCA 477 consensus_5109#1 GTGGTTGANAANTTTGCACCCGGAACCTTGGGCTTGGGAACGAAGCGGACGGTTGAAANA 444 * * ** * * * ** * ** * * * * * consensus_5109#0 AGCCCGGTTACCAAATTCAGCCAAGGCAAAACTTCCTTACCCGCATGAAGGACATGCTCA 537 consensus_5109#1 CCCTTTTTCCCGGGGGTCGGGAACGGNGGAACGTTGGAAACCA----AAACAAAACCCCG 500 * * * ** * * ** *** * * ** ** * * * * consensus_5109#0 GCTCGGTGGCCCTACTGAGCGGACTGATGTATGGCGTGTACT-TGTTCTATAAGAAATTC 596 consensus_5109#1 GGCCGGTAACCGCAA-ACACGGGGAAATGACTGGGCCGGCCAATTTTCCTTAAAACAACG 559 * **** ** * *** *** *** * * * *** *** * * consensus_5109#0 ATTGAACCGCTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAG 656 consensus_5109#1 CCCGAACAAC----ATAACCAAGGAAAAAGCCTGGAGGT-TCACCCAAC--CTGGAGG-G 611 **** * * * ** ** *** * ***** *** *** ** * consensus_5109#0 CTTAATCAGACGATGACNGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAG 716 consensus_5109#1 TTTGGTC-GGCTTTGCGCCCAACCGTTCTCTCGGT---TACACAACAAAGCGGNGG-GCC 666 ** ** * * ** * ** * ** * * * * * *** consensus_5109#0 GGCGAACTGAACCAGGTAAACCAANCCATGCGACCGTAAAGGAGCTGGCCAACTTTAAGG 776 consensus_5109#1 CCCAAATTCCCTTAATTTTTTTNACAACCAAAGCCCTGGATTAAACGACCANTTTCATCT 726 * ** * * * * ** * * * * *** ** * consensus_5109#0 GCGATCTTGATTCGATTAAGGGACTCCTATTGAACAGAAAACAATTCGCCGCACCAAACC 836 consensus_5109#1 TTCATGGGGAACNCGGAAACTTTTTAACTTTGGTGGGCCCACAACAAGGC-TGGCAAACA 785 ** ** ** * *** * **** * * ***** consensus_5109#0 TTCCGGTCGTTCCACCGTCCATCCCGGCATGGC---AGCTACGTTCCCAGCAACATCA-- 891 consensus_5109#1 CGCGGG--GTCCTGGGAAAGAGCCCGGCACAACTTTGGGAAATTTCCAAACCAAATTGGG 843 * ** ** * * ******* * * * **** * * * ** consensus_5109#0 ACCGGCCAGCAGCGAGGGCGAGCACGACAAGCACGACGACAACGACACCGGATCGGGTTC 951 consensus_5109#1 AAAAAAAAACCGCCCCGGAAAGAACATCACGCGCCCNGGGAACGTAGCCA-ACCAACTTT 902 * * * ** ** ** ** ** ** * * **** ** * * ** consensus_5109#0 TGGGTCGAGTGAAAATGATGTCGTCCTGAAGAACAGCGACAGC---AGCCTGGAGATTAT 1008 consensus_5109#1 T--CTTTACAGGGCACTTTGGTGCACAACAAGGCGGCGAAATCTTTAACTTTNAATACAT 960 * * * * * ** * * * * **** * * * * * * ** consensus_5109#0 ATCTTAAACGGTCGAACAATGTGAATGCACCGCACTGCTGGAGAGGAGTGAACCTTCCGG 1068 consensus_5109#1 TTCCCGNAAGTTTTCATTTCCCAAAATNAGAAGTCTTCCCGTGAGTATGGNGCCCACAAC 1020 ** * * * * ** * ** * * *** * * ** * consensus_5109#0 GGGAGGAGTGAACAACAACCGCCGTACG 1096 consensus_5109#1 ATTAATTNNGGATTTTGGG--------- 1039 * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||