cluster # 5112

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Anopheles gambiae
cluster # 5112 cluster # 5112 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5112#0 length = 659 sequences # 3

consensus_5112#1 length = 505 sequences # 1

consensusID : consensus_5112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 659
fasta sequence

                              [CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAACAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG]

[+] EMBL BM585832             [CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGAATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACTGCCGGTCGCGGTCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTATGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGATTGGCTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGTGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAACAAAACGAAGAAGGACCG                                         ]
[+] EMBL BX628449             [       gttcagtcACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGANTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGA                                                                                                                     ]
[+] EMBL BM593217             [                      ccgGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATGGACTACCCGGAGCAGGCGGCGGGAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAACAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG]




>consensus_5112#0
CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCA
GTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCT
AGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACC
CAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATC
GACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGG
CAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAAGGTT
TTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGG
GCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCC
GGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGATG
GACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGAA
CAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG

consensusID : consensus_5112#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTCTCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGGCCTCTCGCCGACGCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGAT]

[+] EMBL AL693040             [AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTCTCCAGTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGGCCTCTCGCCGACGCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGTTTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGAT]




>consensus_5112#1
AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTCTCCAGTGTCGCCAGTTCTCTC
AGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCTAGAAGGTGTTTGGGAAC
GGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACCCAAATTGGCGAAAACCG
AGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATCGACACGGAAGAACCGGC
CTCTCGCCGACGCATCCATTTCGATGCCAAAACCGATGGGCAGCTCCTGAACCTAATCAA
AGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGTTTTCAATAACCTTGATCCGG
AGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGGGGCCGGCTACAATGAGCTGG
AGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGCCGGCGTGGGAGCGAAAACGC
TCGCGAACGAGGGCTGCACACAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5112#0      CCGCCCACGCGTCCGACGTTTTGTAGGCGCTCTGTGAAGGATCTCGAAAGGCCTCTCCCA 60
consensus_5112#1      ---------------AGATCCCCGAGGTTATCTGTGAAGGATCTCGAAAGGCTC--TCCA 43
                                     *  *     ***   **********************     ***

consensus_5112#0      GTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCT 120
consensus_5112#1      GTGTCGCCAGTTCTCTCAGCCGTAAGCCAACAACTCTCCAGGATGCTGTCCATCTTCGCT 103
                      ************************************************************

consensus_5112#0      AGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACC 180
consensus_5112#1      AGAAGGTGTTTGGGAACGGCCGGTCGCGGGCTCATCCCCAGAGCCTGCCAATATTCGACC 163
                      ************************************************************

consensus_5112#0      CAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATC 240
consensus_5112#1      CAAATTGGCGAAAACCGAGCTGATAAAGGGCTGGTGCTTGGGCTTTACGAGCAGGAAATC 223
                      ************************************************************

consensus_5112#0      GACACGGAAGAACCGCGCCTCTCGCCGACCGCCATCCATTTCGATGCCAAAACCGATGGG 300
consensus_5112#1      GACACGGAAGAACCG-GCCTCTCGCCGAC--GCATCCATTTCGATGCCAAAACCGATGGG 280
                      *************** *************   ****************************

consensus_5112#0      CAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAA-GGT 359
consensus_5112#1      CAGCTCCTGAACCTAATCAAAGAGTGCAATTTGAAGGGTAAACTGGGCAGTGTGAACGGT 340
                      ******************************************************** ***

consensus_5112#0      TTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGG 419
consensus_5112#1      TTTCAATAACCTTGATCCGGAGATTGGTTCCATCGCCATCGTCGGCTTGGGCATCGAGGG 400
                      ************************************************************

consensus_5112#0      GGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGC 479
consensus_5112#1      GGCCGGCTACAATGAGCTGGAGATGATTGACGAGGGCCTGGAGAATGTGCGCGTCGCGGC 460
                      ************************************************************

consensus_5112#0      CGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGATCTACGTCGACCCGAT 539
consensus_5112#1      CGGCGTGGGAGCGAAAACGCTCGCGAACGAGGGCTGCACACAGAT--------------- 505
                      *********************************************               

consensus_5112#0      GGACTACCCGGAGCAGGCGGCGGTAGGGCAGCGGTCTGGCGACGTGGCGCTACCAGGCGA 599
consensus_5112#1      ------------------------------------------------------------
                                                                                  

consensus_5112#0      ACAAAACGAAGAAGGACCGCAAACCCATCCCGAAGCTGGACCTGTACGATTCGGCCGAAG 659
consensus_5112#1      ------------------------------------------------------------