cluster # 5115

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Anopheles gambiae
cluster # 5115 cluster # 5115 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5115#0 length = 607 sequences # 1

consensus_5115#1 length = 597 sequences # 2
consensus_5115#2 length = 337 sequences # 1

consensusID : consensus_5115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGCAGACGATCAACTACATTGCCGCCCGCAACCGGGTGGGCGCTGTCGGAGAGGTGATTTCGCGCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGCAACAACATCAACCTGATCGGCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGCAGCTGAACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCGATCTGTTCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGGTCTGCTTGGGTTTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAGCCGGGATGCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACGCCGAGTCGGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGATTCTGCAGGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGTCGAACCGTGGACGT]

[+] EMBL AL696226             [ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGCAGACGATCAACTACATTGCCGCCCGCAACCGGGTGGGCGCTGTCGGAGAGGTGATTTCGCGCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGCAACAACATCAACCTGATCGGCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGCAGCTGAACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCGATCTGTTCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGGTCTGCTTGGGTTTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAGCCGGGATGCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACGCCGAGTCGGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGATTCTGCAGGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGTCGAACCGTGGACGT]




>consensus_5115#0
ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGC
AGACGATCAACTACATTGCCGCCCGCAACCGGGTGGGCGCTGTCGGAGAGGTGATTTCGC
GCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGCAACAACATCAACCTGATCG
GCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGCAGCTGA
ACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCGATCTGT
TCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGGTCTGCTTGGGT
TTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAGCCGGGAT
GCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACGCCGAGTC
GGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGATTCTGCA
GGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGTCGAACCG
TGGACGT

consensusID : consensus_5115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence

                              [TCGCCCCGAGGTTTAAATGAAAGCAGCTACGGTGACTACTAAGCTGTTCTTGTTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTG-ATTCCCGACGGTAAC-GGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGTCCCCAAGGGTGACAAT-GAGGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGT-GTTCCG-CTGTACACCCGT-CGCAATCCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGT-TTCCGGCAGCAACTTCAATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGA-GGATGCCAGCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACGTGGACTGGGGCGCGGGTTCGCAG-ACGATCAA--TACATTGCCG--CCGC-AACCG-GG-TG-GGCGC-TGTCGGAGAGG-TGATTTCGCGCATG-ATCAACA-CATCGTGTCCGC-TACCGG-TACGT-CGCGCAACAACATCAACCTGA-TCGG-CACAGCT-TGGGCGCGCACGTGGCGGCAACGCCGGTAAG]

[+] EMBL AL694301             [TCGCCCCGAGGTTTAAATGAAAGCAGCTACGGTGACTACTAAGCTGTTCTTGTTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTG ATTCCCGACGGTAAC GGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGTCCCCAAGGGTGACAAT GAGGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGT GTTCCG CTGTACACCCGT CGCAATCCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGT TTCCGGCAGCAACTTCAATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGA GGATGCCAGCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACGTGGACTGGGGCGCGGGTTCGCAG ACGATCAA  TACATTGCCG  CCGC AACCG GG TG GGCGC TGTCGGAGAGG TGATTTCGCGCATG ATCAACA CATCGTGTCCGC TACCGG TACGT CGCGCAACAACATCAACCTGA TCGG CACAGCT TGGGCGCGCACGTGGCGGCAACGCCGGTAAG]
[+] EMBL AL693071             [                                                                                  gaggttAGCAT CACCCGTGGGCCCTGCATTCCCGACGGTAACTGGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGT CCCAAGGGTGACAATAGAGGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGTAGTTCCGCCTGTACACCCGTACGCAATCCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGTNTTCCGGCAGCAACTTCAATCCGG  CCATCCGACGCGCTTCCTGATCCACGGCTTCCTGCAGNGGCGACGGATGCCAGCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACGTGGACTGGGGCGCGGGTTCGCAGCACGATCAACTTACATTGCCGCCCCGCAAACCGCGGCTGCGGCGCNTGTCGGAGAGGCTGATTTCGCGCATGCATCAACACCATCGTGTCCGCATACCGGCTACGTCCGCGCAACAACATCAACCTGACTCGGCCACAGCTATGGGCGCGCACGTGGCGGCca          ]




>consensus_5115#1
TCGCCCCGAGGTTTAAATGAAAGCAGCTACGGTGACTACTAAGCTGTTCTTGTTGCTCGT
CGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTGATTCCCGACGG
TAACGGAAGGCTGCGTCTGATCAACGTTAACCCGTACGATGTCCCCAAGGGTGACAATGA
GGTTGAGCCGCTGTTCGATCCGCTGACGGACGTTGTGTTCCGCTGTACACCCGTCGCAAT
CCGGTCCATCCGCAAGTGATCCGCTGGAACGATGCGGGTTCCGTTTCCGGCAGCAACTTC
AATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGAGGATGCCA
GCCTGCACTGGTCCATCAAGGATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACG
TGGACTGGGGCGCGGGTTCGCAGACGATCAATACATTGCCGCCGCAACCGGGTGGGCGCT
GTCGGAGAGGTGATTTCGCGCATGATCAACACATCGTGTCCGCTACCGGTACGTCGCGCA
ACAACATCAACCTGATCGGCACAGCTTGGGCGCGCACGTGGCGGCAACGCCGGTAAG

consensusID : consensus_5115#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCAGCTACGGTGATACTAAGCGTTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACCGTACGATGTCCCCAAAGGGTGACAATTGAGGTTTGAGCGNTTGTTCGATCCGCTGACCGGACGTTGTGTTCCGCCCTGGTACACCCGGTCGCAAATTCCGGGGTCCATCCGGCAAAGTTGNATCCCGGTTGGGAAAACCGGATTTGCCGGGGGGGTTTTTTCCCCGGGTTT]

[+] EMBL AL696567             [TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCAGCTACGGTGATACTAAGCGTTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACCGTACGATGTCCCCAAAGGGTGACAATTGAGGTTTGAGCGNTTGTTCGATCCGCTGACCGGACGTTGTGTTCCGCCCTGGTACACCCGGTCGCAAATTCCGGGGTCCATCCGGCAAAGTTGNATCCCGGTTGGGAAAACCGGATTTGCCGGGGGGGTTTTTTCCCCGGGTTT]




>consensus_5115#2
TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCAGCTACGGTGATACTAAGCG
TTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCATCCACCCGTGGGCC
CTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACCGTACGATGTCCCCA
AAGGGTGACAATTGAGGTTTGAGCGNTTGTTCGATCCGCTGACCGGACGTTGTGTTCCGC
CCTGGTACACCCGGTCGCAAATTCCGGGGTCCATCCGGCAAAGTTGNATCCCGGTTGGGA
AAACCGGATTTGCCGGGGGGGTTTTTTCCCCGGGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5115#1      --------------------------TCGCCCCGAGGTTTAAATGAAAGCA--GCTACGG 32
consensus_5115#2      ----------TTCNATGGGCCAAGGAAATTTCCGCCCCCGAGGTTNAAGCA--GCTACGG 48
consensus_5115#0      ATCGCCAGACGGTCATCGGTGAGTCAACATCGTGCAACGTGGACTGGGGCGCGGGTTCGC 60
                                                       *              **   * * ** 

consensus_5115#1      TGACTACTAAGCTGTTCTTGTTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCA 92
consensus_5115#2      TGA-TACTAAGC-GTTCTTGGTGCTCGTCGCGCTGGGCAGTGCTGCCCCAGTCGAGAGCA 106
consensus_5115#0      AGACGATCAACT--ACATTGCCGCCCGCAAC-CGGGTGGGCGCTGTCGGAGAGGTGATTT 117
                       **  *  **       ***  ** **   * * **   * **** *  **  * **   

consensus_5115#1      TCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACC 152
consensus_5115#2      TCCACCCGTGGGCCCTGATTCCCGACGGTAACGGAAGGCTGCGTCTGATCAACGTTAACC 166
consensus_5115#0      CGCGCATGATCAACACCATCGTGTCCGCTACCGGTACGTCGCGC---AACAACATCAACC 174
                        * *  *     *   **      ** ** *** * *  ***    * **** * ****

consensus_5115#1      CGTACGATGTCCCCAA-GGGTGACA-AT-GAGGTT-GAGCCGCTGTTC----GATCCGCT 204
consensus_5115#2      -GTACGATGTCCCCAAAGGGTGACA-ATTGAGGTTTGAGCGNTTGTTC----GATCCGCT 220
consensus_5115#0      TGATCGGCCACAGCTTGGGCGCGCACGTGGCGGCCAACGCCGGTAAGCACCAGAACGGGC 234
                       *  **    *  *   **    **  * * **     **   *   *    ** * *  

consensus_5115#1      GAC-GGACGTTGTGTTCCGCT---GTACACCCG-TC-GCAA--TCCGG------------ 244
consensus_5115#2      GACCGGACGTTGTGTTCCGCCCTGGTACACCCGGTC-GCAAATTCCGGG----------- 268
consensus_5115#0      AGCTGAACACCATCATCGGTTTGGACCCGGCCGGTCCGCTGTTCTCGAACGGGCAGGCCG 294
                        * * **    *  ** *        *  *** ** **      **             

consensus_5115#1      -TCCATCCGCAAGTGATCCGCTGGAAC-GATGCGGGTTCCGTTT-CCGGCAGCAACTTCA 301
consensus_5115#2      GTCCATCCGGCAAAGTTGNATCCCGGT-TGGGAAAACCGGATTTGCCGGGGGGGTTTTTT 327
consensus_5115#0      ATCTGTTCGGCGCCAACGATGCGCAGTACACGGAAGCCATTTACACCAATGCCGG-TCTG 353
                       **  * **                      *         *   **         *   

consensus_5115#1      ATCCGGCACCATCCGACGCGCTTCCTGATCCACGGATTCCTGGAGGGCCGAGGATGCCAG 361
consensus_5115#2      CCCCGGGTTT-------------------------------------------------- 337
consensus_5115#0      CTTGGGTTTGATCAGCCGCTGGCGCACGCCAACTTCTACCCGAACGGTGGCCGCTCGCAG 413
                          **                                                      

consensus_5115#1      CCTGCACTGGTCCATCAAG-GATCACTTCATCCGCGTCGGTGAGTTCAACATCGTGAACG 420
consensus_5115#2      ------------------------------------------------------------
consensus_5115#0      CCGGGATGCATCCTTGATGTGGCCGGCATCTGTGCGCACAACGGGTGAACAATTTCTACG 473
                                                                                  

consensus_5115#1      TGGACTGGGGCGCGGGTTCGCAGACGATCAATACATTGC-CGCCGCAACCGGGTGGGCGC 479
consensus_5115#2      ------------------------------------------------------------
consensus_5115#0      CCGAGTCGGTTTCGTCGTCGGTTGGGTTCCGCTCGACGCGCTGTGCCAACCATGCCGAGA 533
                                                                                  

consensus_5115#1      TGTCGGAGAGGTGATTTCGCGCATGATCAACACATCGTGTCCGCTACCGGTACGTCGCGC 539
consensus_5115#2      ------------------------------------------------------------
consensus_5115#0      TTCTGCAGGGGCCGCTGTACCCCGAGCGGTGCAAACGCGGAACATGGGCCGGCGAGCCGT 593
                                                                                  

consensus_5115#1      AACAACATCAACCTGATCGGCACAGCTTGGGCGCGCACGTGGCGGCAACGCCGGTAAG 597
consensus_5115#2      ----------------------------------------------------------
consensus_5115#0      CGAACCGTGGACGT-------------------------------------------- 607