These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence [CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAGTGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATAACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTATTGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC] [+] EMBL AL695367 [CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAGTGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATAACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTATTGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC] consensusID : consensus_5120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCCGTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAGTAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACCACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATACTAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGGGGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGCCACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA] [+] EMBL AL693263 [GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCCGTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAGTAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACCACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATACTAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGGGGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGCCACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA] consensusID : consensus_5120#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAGGAACAGCCACTAACAGGTATATTGGATGGTGCA] [+] EMBL BX612634 [GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAGGAACAGCCACTAACAGGTATATTGGATGGTGCA] [+] EMBL BX602833 [ cttTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTGTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACTTTAGTAGCGGTTTCCAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5120#1 ------------------------------------------------------------ consensus_5120#2 ------------------------------------------------------------ consensus_5120#0 CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAG 60 consensus_5120#1 --------------------------------------GAATTGCCGAGGTTAAACGTAT 22 consensus_5120#2 ----------------------------------------GGAGCAGCGGAAGAAGGAGT 20 consensus_5120#0 TGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGT 120 ** * ** ** * * consensus_5120#1 TTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGT 82 consensus_5120#2 TTGTCAAGTATTCCAAAAAGTTTAGCACCACCC----TAAAGGAGTACTTTAAGGAGGGA 76 consensus_5120#0 TTGTCAAGTATTCCAAAAAGTTTAGCACCACCC----TAAAGGAGTACTTTAAGGAGGGA 176 ** * * * * * ** ** * ** * * ** *** * * consensus_5120#1 ATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCA--AACCAAATGGTGCTACTGGAT 140 consensus_5120#2 GAGGCTAATGCCGTATTCCTTTATTCCATTC-CGCCAGCATTCACTAACTTTTACTACGA 135 consensus_5120#0 GAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTAT 236 * * ** * **** * * * * ** * consensus_5120#1 AAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGA 200 consensus_5120#2 AAGAATGGAGTATTATTAATAT---------------TATAGTTACTATTACA------- 173 consensus_5120#0 GATAACGGTGAAGAATAAGTGCGAGTAGTGCT--GATGACGGTCGTCAACAGGGCTGGGA 294 * * * * * * ** * consensus_5120#1 ACGAAGAGTACC-TTAGTAGACGGTTTCCACAGCAAAACCCGTT-GAAGCGCGACACACT 258 consensus_5120#2 -CCACGGCTAC--TTGGCGCGCTGCCCAGGCAG-AATATCAGTT-T---TCCCCCCCAGA 225 consensus_5120#0 AGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTAN 354 * * * * * ** ** * consensus_5120#1 TTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCA 318 consensus_5120#2 CCAAGCTGTTTA-AATGACGTGCAA-CATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAA 283 consensus_5120#0 TTGTATTGTCNA-TTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACC-TCCGA 412 ** * * * *** * * * * consensus_5120#1 GTGCCAAGCGTGCCTATTTACTACTTGTGTGT-CGTAGTGTAGTAG-------------- 363 consensus_5120#2 AAACAAAACGTATTTTCCCGGGCCCCCGGCAT-ATATTTATACGCA-------------- 328 consensus_5120#0 CTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCT 472 * *** * * * * * * consensus_5120#1 ---TAGTGTGTGTAGTAAGGGCGATAGCTT--AAGGGTGCTTCTTACTATCA--CNCCAT 416 consensus_5120#2 ---TATTATACATAA-ATATGTTATTGCCT--GTATGCATTTTGTCTCATTC--CAAGGT 380 consensus_5120#0 GGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAG 532 * * * * * * * * consensus_5120#1 CACCACGGTTTCAATTCCCTGGGTAA----NGGTGCGTGCNGGAGTGTGTAGTGTGTCAG 472 consensus_5120#2 CCTAACAACGCCAAACCA------AA----TGGTGC-TACTGGA--------TAAAAGAA 421 consensus_5120#0 CNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCG 592 * * * * * ** ** * * * * consensus_5120#1 GGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGG 532 consensus_5120#2 AAAAATCCCCAATCCGTTTCCCTCCAG-----GGACAA------AGTGTGTGTTACAAGG 470 consensus_5120#0 CACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCC 652 * * * * * * consensus_5120#1 ATTCATACTAATTAAACAAACCACCATTAACGACTC------TAGGGCTAAACGGTCAAT 586 consensus_5120#2 A--------GAAGAAGAGTACC-TTAGTAGCGGTTT------CCACGCAAAAC--CCGTT 513 consensus_5120#0 AACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGC 712 * * * * * * **** consensus_5120#1 TTCGGGCTACTCGGGGCACGCTAGNCNAAATT--GGCACGGCGAAACAGAGGATTACANA 644 consensus_5120#2 GAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAA 573 consensus_5120#0 CTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGC-ACCANACG 771 * * * * * ** * * * consensus_5120#1 CACGTAATTNATTTGCCACAAC---AAANCCACCTGCTTAAAGACANCAACACAACCCGG 701 consensus_5120#2 TATTTACATTTTCTGTAGTGGA---GGGAGGAACAGCC-ACTAACAGGTATATTGGATGG 629 consensus_5120#0 ACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCA 831 ** * * ** * consensus_5120#1 GAA---------------------------------- 704 consensus_5120#2 TGCA--------------------------------- 633 consensus_5120#0 CCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC 868 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||