These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACACACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGCTAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTATCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNGTAACACATNCGGGTTCTGCTACCCCTGGATATTATCCCGTACCACAATTTATTNGGCCTTATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTTCTNTGCAACTCCACAAACACTAGCGACTATNGCACANACAACACACACACACCCAGCGCCAATTGCTTNGCCAGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAGACAGGNGCTTACACTCAACCACAGCATCTGGCACTGGGCACCGTCCGGANTAGTTAACACAAAC] [+] EMBL AL693274 [CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACACACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGCTAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTATCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNGTAACACATNCGGGTTCTGCTACCCCTGGATATTATCCCGTACCACAATTTATTNGGCCTTATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTTCTNTGCAACTCCACAAACACTAGCGACTATNGCACANACAACACACACACACCCAGCGCCAATTGCTTNGCCAGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAGACAGGNGCTTACACTCAACCACAGCATCTGGCACTGGGCACCGTCCGGANTAGTTAACACAAAC] consensusID : consensus_5122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 764 fasta sequence [CCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATATGTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATT-GTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACACATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCATCTATTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG] [+] EMBL BX627419 [CCTTTGCTGGCCTGCGAACATCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATATGTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATT GTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAA ] [-] EMBL BX626202 [ GGAGGAGGAGAAAGGGGAAAGGGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAAGCTGCGTGTATATCCCTATATAAACACTCCAAGTATATATGTATATATGCACACACACACACGTGTGTACACGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATT GTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACACATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCATCTATTCCAATGCTGTCACGC ] [-] EMBL AL929631 [ TGTAAACTCACACATCGCACGCTCGCACGCTCATTGTCGTATTTAAGCTATGAGTAGACGAGCTTTGATGAATTCCTTTTACCAGCATTTGGCTACCCTCCTTCCGCTTGTATGTGCAGCACATGTGTCACTGTGATTGTGTGTTTCGTGTAATTGGTTTTTTTATAAACATTCTTTTGTATTGTGTTTTT GTTTGCTCCTGTTTTCCTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAAAAAACAAACGTTAAACGATCAAACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTTGTGCGTGTGTGTGTGTGTGTTTATGTACGTATG TTTGTATGACACGCTCCATACACATCCATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAACAAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCATCTCTTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5122#0 CCAGGGTTATTTTTTTTTGCTAGTCTANCATTGTGTCTAACCTTTGCTGGCCTGCGAACA 60 consensus_5122#1 ----------------------------------------CCTTTGCTGGCCTGCGAACA 20 ******************** consensus_5122#0 TCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAANG 120 consensus_5122#1 TCTTTTGAGCTCGCGGGGAGGAGGGAGGGCGGAGGAGGAGGAGGAGGAGAAAGGGGAAAG 80 ********************************************************** * consensus_5122#0 GGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAA 180 consensus_5122#1 GGATGGTTTAGCAGCAAATCGCTAAAGCAGCTTGCGCGCACATCGTAAGCAACACGTCAA 140 ************************************************************ consensus_5122#0 GCTGCGCTGATATATCCCTATATAAACACTCCAAGTATATATGTACTATATGCACACACA 240 consensus_5122#1 GCTGCGT--GTATATCCCTATATAAACACTCCAAGTATATATGTA-TATATGCACACACA 197 ****** *********************************** ************** consensus_5122#0 CACACGCTGTGTACACAGCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTC 300 consensus_5122#1 CACACG-TGTGTACAC-GCAAGTGTAAACTCACACATCGCACGCTCGCACGCTCATTGTC 255 ****** ********* ******************************************* consensus_5122#0 GTACTTTANAGCTATGAGTAGACGAGCTTCGATGANATTCCTTATTACACAGCATTTGGC 360 consensus_5122#1 GTATTT--AAGCTATGAGTAGACGAGCTTTGATGAA-TTCCTT-TTAC-CAGCATTTGGC 310 *** ** ******************** ***** ****** **** *********** consensus_5122#0 TAACCCTCCTTCCGCTCTGTATGTAGCAAGCACATGTGTCACTAGTGAATCAGTCGTGTA 420 consensus_5122#1 TA-CCCTCCTTCCGCT-TGTATGTG--CAGCACATGTGTCACT-GTGATTGTGT-GTTTC 364 ** ************* ******* *************** **** * ** ** * consensus_5122#0 TCGTAGTAACTACCGGTANACTACTCATATAAAACATATCTATATATCGANTAGATGTNG 480 consensus_5122#1 GTGTAATTGTTTTTTTATAAACATTCTTTTGTAGTGTGTTTTTGGTTTGCTCCTGTTTTC 424 *** * * * * ** * * * * * * * * * * * consensus_5122#0 TAACACATNCGGGTTCTGCTACCCCTGGATATTA--TCCCGTACCACAATTTATTNGG-- 536 consensus_5122#1 CTACATTTTTGCTTTCTCATTTAATAAGGCCACAAATTTTGAATCAAAATAGATTTGAAA 484 *** * * **** * * * * * * ** *** *** * consensus_5122#0 --------CCTTATCCATCCAATATATTACANTAAAAGCGGGCCCNCCCCACAACACTTT 588 consensus_5122#1 AAAACAAACGTTAAACGATCAA-ACGGTGCTGCTGCTGCTAATTTTGCCTTTGGGTGTTT 543 * *** * *** * * * ** ** *** consensus_5122#0 CTNTGCAACTCCACAAACACTAGCG-AC-TATNGCACANACAACACAC-----ACACACC 641 consensus_5122#1 GTGCGTGTGTGTGTGTGTGTTTATGTACGTATGTTTTGTATGACACGCTCCATACACATC 603 * * * * * ** *** * **** * ***** * consensus_5122#0 CAGCGCCAATTGCTTNGCCAGGGCCCGCCACACGCCATCTATATNCCCCCTATTCAGTAG 701 consensus_5122#1 CATTACATCCTAGGCAGTTGGCATGAGCGGGATTGGACTGGGAAGGGGCAGATACAAAAC 663 ** * * * * ** * * * * ** ** * consensus_5122#0 ACAGGNGCTTACACTCAACCACAGCATCTGGCACTGGGCACC-GTCCGGANTAGTTAACA 760 consensus_5122#1 AAAACTGCATACAGTCGCCCCGGAACCGGGGGGCCGAAAATAAGACTAAAAGAATAAGCA 723 * * ** **** ** ** ** * * * * * * * * * ** consensus_5122#0 CAAAC------------------------------------ 765 consensus_5122#1 TCTATTCCAATGCTGTCACGCTCGTTTGGCTGNNACCTCGG 764 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||