These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1386 fasta sequence [GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCTGCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATCGAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGGCGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGTGTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGACTATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGACTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCAGCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNCGTGACG] [+] EMBL BX467982 [GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCTGCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATCGAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGGCGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGTGTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGACTATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGACTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCAGCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGC ] [+] EMBL BX625533 [ TATGCAGCAGTTGGGTCGACTGCATGCCG TTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGT GATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGA TGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCGCACG AAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNCGTGACG] [+] EMBL BX620364 [ TGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGAGGGCGTACCGGGAGCGCATGAGCTCGGCGATACGGGACATGGTGCAATATGGCTACCTGTAAGCTCTCGGGGGCATCGACGCATCTGGCCACCTCCNATGGAATTTGCGATAACATTGCGATATGTGTACGCGTGA ] consensusID : consensus_5133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC] [+] EMBL AL693434 [CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5133#0 GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCT 60 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATC 120 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGG 180 consensus_5133#1 --------------------------------------------------CCAAGAATTG 10 **** ** * consensus_5133#0 CGATG----GTTTCGTGGGACAAATGTTCAAAGCTTTCCTG-CAAGAGGGCGAACGACGG 235 consensus_5133#1 CCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGG 70 * * *************** * *********** * **************** consensus_5133#0 GAGGTGTATCT-GTGCAAGA-TTCCACCGCTGAAC-GAGGCACGCCG-TCAGCAGTTCCA 291 consensus_5133#1 GAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCA 130 *********** ******** ************** *********** ************ consensus_5133#0 ATCGATGACTATCTTTAG-CCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATAT 350 consensus_5133#1 ATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATAT 190 ****************** **** *********************** ************ consensus_5133#0 TCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAAT 410 consensus_5133#1 TCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAAT 250 ******************************* **************************** consensus_5133#0 GTTACTATGCCGA-GNGTGACGAAA--CCACCGAACAG--TCGGTCATCATCATGGAGG- 464 consensus_5133#1 GTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGT 310 ************* * ***** ** *********** *************** * consensus_5133#0 -ATCTGCGG--CTGAAGGACTATCG-CATGTGGAATAAGCTGGTGCCCGTG-AACT-ACG 518 consensus_5133#1 GATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACG 370 ****** * ************** ************************* **** *** consensus_5133#0 AACACGCGCGGCTAACTATGCAGCAGT-TGGGTCGACTGCATGCCGTTTTCGCTTGCGAT 577 consensus_5133#1 AACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTG-ATGCC--------------- 414 *************************** *********** ***** consensus_5133#0 GAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGA 637 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 TGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAG 697 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAA 757 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 TATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCT 817 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 CGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGA 877 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTC 937 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGAT 997 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGA 1057 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 AGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACT 1117 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 GATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGA 1177 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 CGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAA 1237 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 TGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATA 1297 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 TGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCG 1357 consensus_5133#1 ------------------------------------------------------------ consensus_5133#0 ATAACATTGCGATATGTGTACNCGTGACG 1386 consensus_5133#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||