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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1386 fasta sequence
[GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCTGCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATCGAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGGCGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGTGTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGACTATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGACTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCAGCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNCGTGACG]
[+] EMBL BX467982 [GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCTGCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATCGAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGGCGATGGTTTCGTGGGACAAATGTTCAAAGCTTTCCTGCAAGAGGGCGAACGACGGGAGGTGTATCTGTGCAAGATTCCACCGCTGAACGAGGCACGCCGTCAGCAGTTCCAATCGATGACTATCTTTAGCCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGAGNGTGACGAAACCACCGAACAGTCGGTCATCATCATGGAGGATCTGCGGCTGAAGGACTATCGCATGTGGAATAAGCTGGTGCCCGTGAACTACGAACACGCGCGGCTAACTATGCAGCAGTTGGGTCGACTGCATGCCGTTTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGC ]
[+] EMBL BX625533 [ TATGCAGCAGTTGGGTCGACTGCATGCCG TTTCGCTTGCGATGAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGT GATGATGCCGGAAGGTAGTCCGTTCGAGGCGATGA TGATTAAAATGCTCACCGATGCAAAGGAAACGCTTGAACCGCACG AAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAATATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATATGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCGATAACATTGCGATATGTGTACNCGTGACG]
[+] EMBL BX620364 [ TGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCTCGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGAGCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTCGTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGATGAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGAAGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACTGATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGACGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAATGCGAACCAGAGGGCGTACCGGGAGCGCATGAGCTCGGCGATACGGGACATGGTGCAATATGGCTACCTGTAAGCTCTCGGGGGCATCGACGCATCTGGCCACCTCCNATGGAATTTGCGATAACATTGCGATATGTGTACGCGTGA ]
consensusID : consensus_5133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC]
[+] EMBL AL693434 [CCAAGAATTGCCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGGGAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCAATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATATTCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAATGTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGTGATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACGAACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTGATGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5133#0 GCAGATCGGCACGTAGGCTAGTGAGGAAAGCTCTACCGCTCCACAGTAGTCGCTGATGCT 60
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GCCACTAGCTCTGGTGAGCTTCCCCAGTATCTGTACAATGCCATGGAACAGGTGGCAATC 120
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GAGCAGGGGCTTTACGGCGGGCAAGTTCAAGATTGAGTTTGACGTCGGATCCAACAAGGG 180
consensus_5133#1 --------------------------------------------------CCAAGAATTG 10
**** ** *
consensus_5133#0 CGATG----GTTTCGTGGGACAAATGTTCAAAGCTTTCCTG-CAAGAGGGCGAACGACGG 235
consensus_5133#1 CCCCGAGGTGTTTCGTGGGACAAAATGTTCAAGCTTTCCTGTCNAGAGGGCGAACGACGG 70
* * *************** * *********** * ****************
consensus_5133#0 GAGGTGTATCT-GTGCAAGA-TTCCACCGCTGAAC-GAGGCACGCCG-TCAGCAGTTCCA 291
consensus_5133#1 GAGGTGTATCTCGTGCAAGACTTCCACCGCTGAACAGAGGCACGCCGCTCAGCAGTTCCA 130
*********** ******** ************** *********** ************
consensus_5133#0 ATCGATGACTATCTTTAG-CCGCGAAACGCTTGCTTACAAGAGTCTGCTACCGCTGATAT 350
consensus_5133#1 ATCGATGACTATCTTTAGGCCGCNAAACGCTTGCTTACAAGAGTCTGGTACCGCTGATAT 190
****************** **** *********************** ************
consensus_5133#0 TCACCTACCAGGAGGAGAAGGGCATCAGTCGGGAGGATGGGTTCTTCAACGTGCCGAAAT 410
consensus_5133#1 TCACCTACCAGGAGGAGAAGGGCATCAGTCGNGAGGATGGGTTCTTCAACGTGCCGAAAT 250
******************************* ****************************
consensus_5133#0 GTTACTATGCCGA-GNGTGACGAAA--CCACCGAACAG--TCGGTCATCATCATGGAGG- 464
consensus_5133#1 GTTACTATGCCGACGTGTGACTGAAATCCACCGAACAGATCTGGTCATCATCATGGAAGT 310
************* * ***** ** *********** *************** *
consensus_5133#0 -ATCTGCGG--CTGAAGGACTATCG-CATGTGGAATAAGCTGGTGCCCGTG-AACT-ACG 518
consensus_5133#1 GATCTGCTGGTCTGAAGGACTATCGACATGTGGAATAAGCTGGTGCCCGTGTAACTCACG 370
****** * ************** ************************* **** ***
consensus_5133#0 AACACGCGCGGCTAACTATGCAGCAGT-TGGGTCGACTGCATGCCGTTTTCGCTTGCGAT 577
consensus_5133#1 AACACGCGCGGCTAACTATGCAGCAGTATGGGTCGACTG-ATGCC--------------- 414
*************************** *********** *****
consensus_5133#0 GAAGCGTGACCGGCCGGCTGATTTCGAGCAGTTCAAGGTGCCGGACCCGCTGGAGGTGGA 637
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 TGATGCCGGAAGGTAGTCCGTTCGAGGCGATGATTGATTAAAATGCTCACCGATGCAAAG 697
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GAAACGCTTGAACCCGACGAAAACCAAAGAGCGGACAAAGATGCAGAAGCTGATTGACAA 757
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 TATGCGGCAGGAGATGAAAACCTGTACGGATGGTGCGCTGGCGGAGCCGTATGCCGTGCT 817
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 CGGTCACGGTGACTGTTGGGTGAACAACTTTATGTTTCACTATAAGAACGGCGCCCCAGA 877
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GCATGTAATTCTGCTCGACTGGCAGATCACGCGGTACGTCTCGCCGGTGACGGACCTGTC 937
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GTACTTCATCTTCTGCTGCACGGACGGAGAGTTCCGGCGGCGGCACTACGACGAGATGAT 997
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GAGCATCTACTACAACTCGCTGGAAGCACTGCTCGAAAAGCTTGGCCACAACCCGCAGGA 1057
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 AGTGTTCCCGCGGACGGCCCTGATGCGTCAGCTGCGCCGCTTCGGCCGGTTCGGCATACT 1117
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 GATGGCCATCTTCCTGGTGCCCATGCTGTGCACGCGCAACGAAGATCTGCCCGATATGGA 1177
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 CGAGGCGGCCGAAAAGTATCGCGAAACGAATGAGATGGATTTGAACGCGATGACGCTGAA 1237
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 TGCGAACCAGANGGCGTACCGGGAGCGCATGAGCTCGGCGATACNGGACATGGTGCAATA 1297
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 TGGCTACCTGTAAGCTCTCNGGGGCATCGACGCATCTGGGCACCTCCAATGGAATTTGCG 1357
consensus_5133#1 ------------------------------------------------------------
consensus_5133#0 ATAACATTGCGATATGTGTACNCGTGACG 1386
consensus_5133#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||