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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1138 fasta sequence
[AGGGCAAATATCGATAGCCGGCTTTGCTTTCTGCAAAGTTTTGCTTGCTTAGAGAAATTTCCGTTAGCACAACATGAAACGTATCATGGCTTTGCGTGAAATGATATTCAAAGATGCTGTTCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATTCATCGCTACACATCAAGTAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCTCCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTTCACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGGCAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGAACGATTTGCAGCACAAGCTGGACATCGTAACGGACAAACTGAACACTAGCGAGCTGGAGCTCATAGAGGTGAAGAAGCAAGTTGCGGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGACATCGAATACTTTGACTTTTTGAAAAAAGAATTCAAGCTTTTATCCGAGAAGCAGCGCCTGGATGGACTGATAGGGCTACTGAACTACGAACACCAACTGCTGCTG-ATGCAGCTAACACACGCCCTCAACGAGGTCCATGCGAAGGAGCGCCATGAAGCAAACACGCTTCGATTGGTGAAGGTATTCCTCACCACACTGGTGGCCGTGATTGGATTCGCAGGAAACGCCGGGTACAATCACTACAAGGACGCCAAGGTGCAGAACCACATGATGCAGCAAAGCACGATGCTTCAGACGGTGTTGGAGTATGTGGAGGAGGAGAAATCACGCAAAGCGACAGCTTCGACTGAATCCTGGGGAAGCTATTTGTATCGCCAGCCGGGCCGGCTGTACGGATACCTGCTGCCGAAACAGTCCATCGAGTCATGGGGAAGCAGCCTATATCGTCAACCTGTTCGGCTTTATCGGTACATGTTTCCTAAAAATCCATAACAGTTCGGATTAGGTGTATACAATTCATTGGCGACATTTCATTTCATAGTTTTACAACGGCAGAGGTTATGCCAATTTTCGAAGTACATTTTGTAAAGGAGGATTTACCATGTATTTTGGAAGAAT]
[+] EMBL BX622569 [AGGGCAAATATCGATAGCCGGCTTTGCTTTCTGCAAAGTTTTGCTTGCTTAGAGAAATTTCCGTTAGCACAACATGAAACGTATCATGGCTTTGCGTGAAATGATATTCAAAGATGCTGTTCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATTCATCGCTACACATCAAGTAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCTCCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTTCACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGGCAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGAACGATTTGCAGCACAAGCTGGACATCGTAACGGACAAACTGAACACTAGCGAGCTGGAGCTCATAGAGGTGAAGAAGCAAGTTGCGGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGACATCGAATACTTTGACTTTTTGAAAAAAGAATTCAAGCTTTTATCCGAGAAGCAGCGCCTGGATGGACTGATAGGGCTACTGAACTACGAACACCAACTGCTGCTG ATGCAGCTAACACACGTCCTCAACGAGGTCCATGCGAAGGAGCGCCATGAAGCAAACACGCTTCGATTGGTGAAGGTATTCCTCACCACACTGGTGGCCGTGATTGGATTCGCAGGAAACGCCGGGTACNATCACTACNAGGACGCCAAGGTGCAGAACCACATGATGCAGCAAAGCACGATGCTTCAGACGGTGTTGGAGTATGTGGAGGAGGAG ]
[+] EMBL CNS097EX [ acAGCCGGCTTTGCTTTCTGCAAAGTTTTGCTTGCTTAGAGAAATTTCCGTTAGCACAACATGAAACGTATCATGGCTTTGCATGAAATGATATCCAAAGATGCTGTTCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATGCATCGCTACACAGCAAGGAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCTCCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTTCACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGGCAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGGACGATTTGCAGCACAAGCTGGACATCGTAATGGACAAACGGAACACTAGCGAGCTGGAGCTCATAGAGGTCAAGAAGCAACTTGCGGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGACATCGAATACTTAGACTTTTTGAAAAAAGAATTCAAGCTTTTATCCGAGAAGCAGCGCTTGGATGGACTGATAGGGCTACTGAACTACGAACACCAACTGCTGCTG ATGCAGCTAACACACGCCCTCAACGAGGTCCATGCGAAGGAGCGCCATGAAGCAAACACGCTTCGATTGGTGAAGGTATTCCTCACCACACTGGTGGCCGTGATTGGATTCGCAGGAAACGCCGGGTACAATCACTACAAGGACGCCAAGGTGCAGAACCACATGATGCAGCAAAGCACGATGCTTCAGACGGTGTTGGAGTATGTGGAGGAGGAGAAATCACGCAAAGCGACAGCTTCGACTGA ]
[-] EMBL CNS097EY [ CGAACACCAACTGCTGCTGTATGCAGCTAACACACGCCCTCAACGAGGTCCATGCGAAGGAGCGCCATGAAGCAAACACGCTTCGATTGGTGAAGGTATTCCTCACCACACTGGTGGCCGTGATTGGATTCGCAGGAAACGCCGGGTACAATCACTACAAGGACGCCAAGGTGCAGAACCACATGATGCAGCAAAGCACGATGCTTCAGACGGTGTTGGAGTATGTGGAGGAGGAGAAATCACGCAAAGCGACAGCTTCGACTGAATCCTGGGGAAGCTATTTGTATCGCCAGCCGGGCCGGCTGTACGGATACCTGCTGCCGAAACAGTCCATCGAGTCATGGGGAAGCAGCCTATATCGTCAACCTGTTCGGCTTTATCGGTACATGTTTCCTAAAAATCCATAACAGTTCGGATTAGGTGTATACAATTCATTGGCGACATTTCATTTCATAGTTTTACAACGGCAGAGGTTATGCCAATTTTCGAAGTACATTTTGTAAAGGAGGATTTACCATGTATTTTGGAAGAAT]
consensusID : consensus_5140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[CNCCCGAGGTGATAGCCGGCTTGCTTTCTGCAAGTTTTGCTTGCTTAGAGAAATTTCCGTTAGCACAACATGAAACGTATCATGGCTTTGCGTGAAATGATATTCAAAGATGCTGTTCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATTCATCGCTACACATCAAGTAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCTCCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTTCACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGGCAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGAACGATTTGCAGCACAAGCTGGACATCGTAACGGACAAACTGAACACTAGCGAGCTGGAGCTCATAGAGGTGAAGAAGCAAGTTGCGGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGA]
[+] EMBL AL693792 [CNCCCGAGGTGATAGCCGGCTTGCTTTCTGCAAGTTTTGCTTGCTTAGAGAAATTTCCGTTAGCACAACATGAAACGTATCATGGCTTTGCGTGAAATGATATTCAAAGATGCTGTTCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATTCATCGCTACACATCAAGTAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCTCCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTTCACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGGCAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGAACGATTTGCAGCACAAGCTGGACATCGTAACGGACAAACTGAACACTAGCGAGCTGGAGCTCATAGAGGTGAAGAAGCAAGTTGCGGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5140#0 AGGGCAAATATCGATAGCCGGCTTTGCTTTCTGCAAAGTTTTGCTTGCTTAGAGAAATTT 60
consensus_5140#1 --CNCCCGAGGTGATAGCCGGCTT-GCTTTCTGCAA-GTTTTGCTTGCTTAGAGAAATTT 56
* ************ *********** ***********************
consensus_5140#0 CCGTTAGCACAACATGAAACGTATCATGGCTTTGCGTGAAATGATATTCAAAGATGCTGT 120
consensus_5140#1 CCGTTAGCACAACATGAAACGTATCATGGCTTTGCGTGAAATGATATTCAAAGATGCTGT 116
************************************************************
consensus_5140#0 TCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATTCAT 180
consensus_5140#1 TCGTATGTACTCCCAACTGTTAATAATCAATCCACTGCCGGTGAACTCCAACCGATTCAT 176
************************************************************
consensus_5140#0 CGCTACACATCAAGTAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCT 240
consensus_5140#1 CGCTACACATCAAGTAAACCTTTCAAAGGGCAGTGGTCAATCATCATCATACGATAGCCT 236
************************************************************
consensus_5140#0 CCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTT 300
consensus_5140#1 CCCTGAAGGATTTGCTCATCCTTTTGTAACGCACGGTCAGAGTTCCCTCAAGCTACGTTT 296
************************************************************
consensus_5140#0 CACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGG 360
consensus_5140#1 CACCGAGCAAGGAAGGCTTATGATTTACAACATTAAGCATTTTTACGAGGACTTTACGGG 356
************************************************************
consensus_5140#0 CAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGAACGATTTGCAGCACAAGCTGGACAT 420
consensus_5140#1 CAACAGTGAGGTGAGGGAGGCACAAAGCAAAGTGAACGATTTGCAGCACAAGCTGGACAT 416
************************************************************
consensus_5140#0 CGTAACGGACAAACTGAACACTAGCGAGCTGGAGCTCATAGAGGTGAAGAAGCAAGTTGC 480
consensus_5140#1 CGTAACGGACAAACTGAACACTAGCGAGCTGGAGCTCATAGAGGTGAAGAAGCAAGTTGC 476
************************************************************
consensus_5140#0 GGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGACATCGAATACTTTGACTTTTT 540
consensus_5140#1 GGAACTGAACAGCTCACAGCAAAATGTAACGCATCAGGA--------------------- 515
***************************************
consensus_5140#0 GAAAAAAGAATTCAAGCTTTTATCCGAGAAGCAGCGCCTGGATGGACTGATAGGGCTACT 600
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 GAACTACGAACACCAACTGCTGCTGATGCAGCTAACACACGCCCTCAACGAGGTCCATGC 660
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 GAAGGAGCGCCATGAAGCAAACACGCTTCGATTGGTGAAGGTATTCCTCACCACACTGGT 720
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 GGCCGTGATTGGATTCGCAGGAAACGCCGGGTACAATCACTACAAGGACGCCAAGGTGCA 780
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 GAACCACATGATGCAGCAAAGCACGATGCTTCAGACGGTGTTGGAGTATGTGGAGGAGGA 840
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 GAAATCACGCAAAGCGACAGCTTCGACTGAATCCTGGGGAAGCTATTTGTATCGCCAGCC 900
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 GGGCCGGCTGTACGGATACCTGCTGCCGAAACAGTCCATCGAGTCATGGGGAAGCAGCCT 960
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 ATATCGTCAACCTGTTCGGCTTTATCGGTACATGTTTCCTAAAAATCCATAACAGTTCGG 1020
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 ATTAGGTGTATACAATTCATTGGCGACATTTCATTTCATAGTTTTACAACGGCAGAGGTT 1080
consensus_5140#1 ------------------------------------------------------------
consensus_5140#0 ATGCCAATTTTCGAAGTACATTTTGTAAAGGAGGATTTACCATGTATTTTGGAAGAAT 1138
consensus_5140#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||