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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1248 fasta sequence
[CAGNTTAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAATCTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTATATTGCGTAATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGAGGGGGCAACGTAGCAAAACGGTGGTAGTCTGTCGGTACAACTTTGTATTTAGATTCTTTATCGATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTGTGTACGCTTTTAGTTTAAAACGAAAACGACCGGCACTCCTTTTTTCCCACCGCGGAGGGGTAAANTGCCTTTGAAAAAATGACTAATATTTGGGCGCGCCTTGTTAGTTGCCGGGTCAATATGGGACACTGGTNCAACACACATATATATATTATTCTGGTCAACACATGCAACATTTGGTAACACACNATGCAACAACAGGGACACCCGGCGGCAGTTAATCCGCAAATCCCTAAACAACGCATTGTATTCCCGCAACGCCGTTACCGGGGACAACCCCGAGGTCCCGAACAACCAAGGAACCCCNACACACGGGGCAACATTTACTCCAATNACCCCNTAGACCTACCCCAACGGCACCAGCGACAACANCTGGAACTGGTNCCACCGCNGGGCACNCNCGGGGATCGGACTACCAAAACGCNCGGGGCTCCACAGCATCNACACAGGCCCACACANANACACCTGGGCNAACAACACAACCGGNACTNCTCNCCGAACCGACNTACCGGAAACGGNCCTATANGAANCGAAGATCCCCCTGGGTACCACGCCGAGCTCAGCANCAAGCNTAGGCTGGANAACGCAACAAAGCCCGAGCACNACACCGCGAAACCACAANGGAACCACACACCGACANAACACNGAAAAACCNGCCAGCAAAATATACCCCTTNAAAGGNNACCCNCAATCNACACCAACATNGGAACAACNGGGAAGGCCACNGACGGCGGCCCTGGCACCAACGGACAACAAGGGCACGACCNGTAAACACATGTACACACCAGCCCAAAGTGAGCGCACATACTACCGGAANCAAGTGTACCCAAAGACCACCACAGGGAGNGGCCACCGACGAAAANCGGAANAAAGGGCCCAGNCCAGGATAAAAGCAGNACAAAACAACCCAGGAGAGACAGAAGTACCAACCCCACAGGAGGCACANACACAAGTAGCGC]
[+] EMBL AL693893 [CAGNTTAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAATCTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTATATTGCGTAATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGAGGGGGCAACGTAGCAAAACGGTGGTAGTCTGTCGGTACAACTTTGTATTTAGATTCTTTATCGATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTGTGTACGCTTTTAGTTTAAAACGAAAACGACCGGCACTCCTTTTTTCCCACCGCGGAGGGGTAAANTGCCTTTGAAAAAATGACTAATATTTGGGCGCGCCTTGTTAGTTGCCGGGTCAATATGGGACACTGGTNCAACACACATATATATATTATTCTGGTCAACACATGCAACATTTGGTAACACACNATGCAACAACAGGGACACCCGGCGGCAGTTAATCCGCAAATCCCTAAACAACGCATTGTATTCCCGCAACGCCGTTACCGGGGACAACCCCGAGGTCCCGAACAACCAAGGAACCCCNACACACGGGGCAACATTTACTCCAATNACCCCNTAGACCTACCCCAACGGCACCAGCGACAACANCTGGAACTGGTNCCACCGCNGGGCACNCNCGGGGATCGGACTACCAAAACGCNCGGGGCTCCACAGCATCNACACAGGCCCACACANANACACCTGGGCNAACAACACAACCGGNACTNCTCNCCGAACCGACNTACCGGAAACGGNCCTATANGAANCGAAGATCCCCCTGGGTACCACGCCGAGCTCAGCANCAAGCNTAGGCTGGANAACGCAACAAAGCCCGAGCACNACACCGCGAAACCACAANGGAACCACACACCGACANAACACNGAAAAACCNGCCAGCAAAATATACCCCTTNAAAGGNNACCCNCAATCNACACCAACATNGGAACAACNGGGAAGGCCACNGACGGCGGCCCTGGCACCAACGGACAACAAGGGCACGACCNGTAAACACATGTACACACCAGCCCAAAGTGAGCGCACATACTACCGGAANCAAGTGTACCCAAAGACCACCACAGGGAGNGGCCACCGACGAAAANCGGAANAAAGGGCCCAGNCCAGGATAAAAGCAGNACAAAACAACCCAGGAGAGACAGAAGTACCAACCCCACAGGAGGCACANACACAAGTAGCGC]
consensusID : consensus_5142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 857 fasta sequence
[GAGAGAGAGCATTATTAGAAGATATGAGGTATGCAAATGTGTGCATACGAGTTGTAGGTAATGTAAAAAAGAGAAGGCGAGAGAGTACCGTTTAGAAAGTCTTTTAGTGTACGTTGAGGATGGGGTAGTAAGTTGGCAGACAAAACGATCCGCCAAGCTTACGACAAGCATAACCCAAAACTGAGTGCGCCACCGCTACAAACACACACACATCGGCGTGTGGTTGAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAATCTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTATATTGCGTTATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGAGGGGGCAACGTAGCAAAACGGTGGTAGTTGTTGGTACAACTTTGTATTTAGATTCTTTATCGATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTTGTGTACGCTTTAGTTAAACGAAACGACCGCGCACTCCTTTTTCCCACCGCGGAGGGTACATGCTTTGAAAAATGACTATTTTTGCGCGCCTGTTAGTTGCCGGTAATATGGAACTGTAAAAAAATATATATGTATATCTGTAAAATGAACATTGCACACACATACACACAGGCACAGCGCGGCGTTATCGCAATCCTAGCACGCATGTATCACAAACGCGTACGGAACCGGTCGACACAGAGGAAAGACGAAGGGAATTTTCATCCTTTTCCAGACAGGAAAATGATGTTANGGGGAAATGTTGTTTTAATTGNTATTAAAGCAAAGAATCTGGTAAAAAACGGATTTT]
[+] EMBL BX620885 [GAGAGAGAGCATTATTAGAAGATATGAGGTATGCAAATGTGTGCATACGAGTTGTAGGTAATGTAAAAAAGAGAAGGCGAGAGAGTACCGTTTAGAAAGTCTTTTAGTGTACGTTGAGGATGGGGTAGTAAGTTGGCAGACAAAACGATCCGCCAAGCTTACGACAAGCATAACCCAAAACTGAGTGCGCCACCGCTACAAACACACACACATCGGCGTGTGGTTGAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAATCTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTATATTGCGTTATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGAGGGGGCAACGTAGCAAAACGGTGGTAGTTGTTGGTACAACTTTGTATTTAGATTCTTTATCGATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTTGTGTACGCTTTAGTTAAACGAAACGACCGCGCACTCCTTTTTCCCACCGCGGAGGGTACATGCTTTGAAAAATGACTATTTTTGCGCGCCTGTTAGTTGCCGGTAATATGGAACTGTAAAAAAATATATATGTATATCTGTAAAATGAACATT ]
[+] EMBL BX623401 [ GGTATGCAAATGTGTGCATACGAGTTGTAGGTAATGTAAAAAAGAGAAGGCGAGAGAGTACCGTTTAGAAAGTCTTTTAGTGTACGTTGAGGTAGGGGTAGTAAGTTGGCAGACAAAACGATCCGCCAAGCTTACAAGAAGCATAACCCAAAACTGAGTGCGCCACCGCTACAAACACACACACATCGGCGTGTGGTTGAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAATCTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTATATTGCGTTATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGAGGGGGCAACGTAGCAAAACGGTGGTAGTTGTTGGTACAACTTTGTATTTAGATTCTTTATCGATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTTGTGTACGCTTTAGTTAAACGAAACGACCGCGCACTCCTTTTTCCCACCGCGGAGGGTAAATGCTTTGAAAAATGACTATTTTTGCGCGCCTGTTAGGTACCGGTAATATGGAACTGTTAAAAAATATATA TATATCTGTAAAATGAACATTGCACACACATACACACAGGCACAGCGCGGCGTTATCGCAATCCTAGCACGCATGTATCACAAACGCGTACGGAACCGGTCGACACAGAGGAAAGACGAAGGGAATTTTCATCCTTTTCCAGACAGGAAAATGATGTTANGGGGAAATGTTGTTTTAATTGNTATTAAAGCAAAGAATCTGGTAAAAAACGGATTTT]
consensusID : consensus_5142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence
[ACACACATGCACACAGGCACACCGCGGCGTTATCGCAATCCTAACACGCATGTATCACGAACGCGTACGGAACCGGTCGACACAGACGAAGGGAATTATCATCCTTCTCCAGGCAGGAAAATGATGTTAAGGGAAAGGTTGTTTTAATTGTTATTAAAGCAAAGAATCTGTAAAAAAACGGATTTTCGAAATTTGATTGCTTGTGGTGTCCTGTCCGCGGTGGAGTGTTTTATACGGGTTTGAA]
[+] EMBL BX615681 [ACACACATGCACACAGGCACACCGCGGCGTTATCGCAATCCTAACACGCATGTATCACGAACGCGTACGGAACCGGTCGACACAGACGAAGGGAATTATCATCCTTCTCCAGGCAGGAAAATGATGTTAAGGGAAAGGTTGTTTTAATTGTTATTAAAGCAAAGAATCTGTAAAAAAACGGATTTTCGAAATTTGATTGCTTGTGGTGTCCTGTCCGCGGTGGAGTGTTTTATACGGGTTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CAGNTTAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAA 60
consensus_5142#1 -------------------GAGAGAGAGCATTATTAGAAGATATGAGGTATGCAAATGTG 41
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 TCTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTAT 120
consensus_5142#1 TGCATACGAGTTGTAGGTAATGTAAAAAAGAGAAGGCGAGAGAGTACCGTTTAGAAAGTC 101
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 ATTGCGTAATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGA 180
consensus_5142#1 TTTTAGTGTACGTTGAGGATGGGGTAGTAAGTTGGCAGACAAAACGATCCGCCAAGCTTA 161
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 GGGGGCAACGTAGCAAAACGGTGGTAGTCTGTCGGTACAACTTTGTATTTAGATTCTTTA 240
consensus_5142#1 CGACAAGCATAACCCAAAACTGAGTGCGCCACCGCTACAAACACACACACATCGGCGTGT 221
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 TCGATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTGTGTACGCTTTT 300
consensus_5142#1 GGTTGAATCGGTTTATTTTATTGCTTGCTGCTGTACGTTCCGAGGTGAAGTTTGAACAAT 281
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 AGTTTAAAACGAAAACGACCGGCACTCCTTTTTTCCCACCGCGGAGGGGTAAANTGCCTT 360
consensus_5142#1 CTTCTATATTTTATTACTTTAATTCGAGCTTTTTTTTCCTATTCGATAACTACCACTATA 341
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 TGAAAAAATGACTAATATTTGGGCGCGCCTTGTTAGTTGCCGGGTCAATATGGGACACTG 420
consensus_5142#1 TTGCGTTATGTAAATCAATCCAGTGCACATAGCAGAAAGAGAAAGAGAGAGAAAGGAGAG 401
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 GTNCAACACACATATATATATTATTCTGGTCAACACATGCAACATTTGGTAACACACNAT 480
consensus_5142#1 GGGGCAACGTAGCAAAACGGTGGTAGTTGTTGGTACAACTTTGTATTTAGATTCTTTATC 461
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 GCAACAACAGGGACACCCGGCGGCAGTTAATCCGCAAATCCCTAAACAACGCATTGTATT 540
consensus_5142#1 GATTTGAAAAACCCAAAATGAAAACTTATTCTTAATTTAATGCGCTTGTGTACGCTTTAG 521
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CCCGCAACGCCGTTACCGGGGACAACCCCGAGGTCCCGAACAACCAAGGAACCCCNACAC 600
consensus_5142#1 TTAAACGAAACGACCGCGCACTCCTTTTTCCCACCGCGGAGGGTACATGCTTTGAAAAAT 581
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 ACGGGGCAACATTTACTCCAATNACCCCNTAGACCTACCCCAACGGCACCAGCGACAACA 660
consensus_5142#1 GACTATTTTTGCGCGCCTGTTAGTTGCCGGTAATATGGAACTGTAAAAAAATATATATGT 641
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 NCTGGAACTGGTNCCACCGCNGGGCACNCNCGGGGATCGGACTACCAAAACGCNCGGGGC 720
consensus_5142#1 ATATCTGTAAAATGAACATTGCACACACATACACACAGGCA--CAGCGCGGC-GTTATCG 698
consensus_5142#2 ----------------------ACACACATGCACACAGGCA--CACCGCGGC-GTTATCG 35
consensus_5142#0 TCCACAGCATCNACACAGGCCCACACANANACACCTGGGCNAACAACACAACCGGNACTN 780
***** * *** *** ** * * * * *
consensus_5142#1 CAATCCTAGC--ACGCATGTATCACAAACGCGTACGGAACC--GGTCGACACAGAGGAAA 754
consensus_5142#2 CAATCCTAAC--ACGCATGTATCACGAACGCGTACGGAACC--GGTCGACACAGA----- 86
consensus_5142#0 CTCNCCGAACCGACNTACCGGAAACGGNCCTATANGAANCGAAGATCCCCCTGGGTACCA 840
* ** * * ** * ** * ** * * * * ** * *
consensus_5142#1 GACGAAGGGAATTTTCATCCTTTT-CCAGACAGGAAAATGATGTTANGGGGAAATGTTGT 813
consensus_5142#2 --CGAAGGGAATTATCATCCTTCT-CCAGGCAGGAAAATGATGTTAAGGGAAAG-GTTGT 142
consensus_5142#0 CGCCGAGCTCAGCANCAAGCNTAGGCTGGANAACGCAACAAAGCCCGAGCACNACACCGC 900
* ** * ** * * * * * ** * * * *
consensus_5142#1 TTTAATTGNTATTAAAGCA------AAGAATCTGGTAAAAAACGGATTTT---------- 857
consensus_5142#2 TTTAATTGTTATTAAAGCA------AAGAATCTGTAAAAAAACGGATTTTCGAAATTTGA 196
consensus_5142#0 GA-AACCACAANGGAACCACACACCGACANAACACNGAAAAACCNGCCAGCAAAATATAC 959
** * ** ** * * ******
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 TTGCTTGT-GGTGTCCTGTCCGCGGTGGAGTGTTTTATACGGGTTTGAA----------- 244
consensus_5142#0 CCCTTNAAAGGNNACCCNCAATCNACACCAACATNGGAACAACNGGGAAGGCCACNGACG 1019
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 GCGGCCCTGGCACCAACGGACAACAAGGGCACGACCNGTAAACACATGTACACACCAGCC 1079
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CAAAGTGAGCGCACATACTACCGGAANCAAGTGTACCCAAAGACCACCACAGGGAGNGGC 1139
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CACCGACGAAAANCGGAANAAAGGGCCCAGNCCAGGATAAAAGCAGNACAAAACAACCCA 1199
consensus_5142#1 -------------------------------------------------
consensus_5142#2 -------------------------------------------------
consensus_5142#0 GGAGAGACAGAAGTACCAACCCCACAGGAGGCACANACACAAGTAGCGC 1248
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||