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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1004 fasta sequence
[CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGGTGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATCAAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTCGAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTGTGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCGACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGCCTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAAACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCACTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATCGATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGATTGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTCTTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTAGGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA]
[+] EMBL BM631737 [CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGGTGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATCAAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTCGAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTGTGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCGACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGCCTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAAACCGATTTGATTACGT ]
[+] EMBL BM596309 [ ccggTTGATAGCTCATTTGAAAGCCCAACTAGAGGAGTACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCC AAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAGACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCACTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATCGATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGATTGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTCTTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTAGGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA]
consensusID : consensus_5149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT]
[+] EMBL BM602203 [CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT]
consensusID : consensus_5149#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAACTCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCATGGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCGATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCTCGATCCCGGCTG]
[+] EMBL AL694242 [CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAACTCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCATGGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCGATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCTCGATCCCGGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5149#0 CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGG 60
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 ------------------------------------------------------------
consensus_5149#0 TGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATC 120
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 ------------------------------------------------------------
consensus_5149#0 AAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTC 180
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 ------------------------------------------------------------
consensus_5149#0 GAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTG 240
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 ------------------------------------------------------------
consensus_5149#0 TGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCG 300
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 ------------------------------------------------------------
consensus_5149#0 ACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGC 360
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 ---------------------CCGCTGGGGTGGTAC--GACGATGGGTTCGACATCTATG 37
consensus_5149#0 CTCATTTGAAAGCCCAACTA--GAGGAATACTTTGCCACCAACCCGAAAGTCCG-AATCG 417
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 GTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGG 97
consensus_5149#0 TACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGG--TGGAAAGAGTA 475
consensus_5149#2 ------------------------------------------------------------
consensus_5149#1 TTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAA 157
consensus_5149#0 CAAAAACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGG 535
consensus_5149#2 ----------------------------CGCCCACGTTTATGTTCGCAAGGGATGGCTGG 32
consensus_5149#1 AGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATA 217
* * * * ** ** *
consensus_5149#0 AGGCACTGATACAGCCCGT-TGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGAT 594
consensus_5149#2 ANGCACTGCTA-ATGTTGT-GGCACGTAACTCCACCACGATCGCGATCCCATCGATCGAT 90
consensus_5149#1 AGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAG 277
* *** * * * * * ** ** ** * *
consensus_5149#0 TGGATCGATGAGAAC--AACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTC--GG 650
consensus_5149#2 TGGATCGATGAAAA---AGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATC--GG 145
consensus_5149#1 TGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGG 337
*** * * ** * * * * *** * * ** * **
consensus_5149#0 TGCATACGATTG--GGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAG 708
consensus_5149#2 TGCGTACGATTG--GGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAG 203
consensus_5149#1 AGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAA 397
* * * * * ** * *** * ** * * *
consensus_5149#0 AACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATC 768
consensus_5149#2 TATGCAAACCTTCTCGAACCGTTTGATACGCCTGC-ATGGCTGGAGGATTGTTCGCGATC 262
consensus_5149#1 AGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCA--T 455
* * * * ** * * * ** * * * ** * **
consensus_5149#0 AATAGGACGTT-CTTCGAGCGCATTGGATGGTAC--GAT-GATGGG-TTCGAT-ATCTAT 822
consensus_5149#2 AATAGGACGTT-TTTTGAGCGACTGGGGTGGTAC--GACCGATGGGGTTCGACCATCTAT 319
consensus_5149#1 GGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGAT 515
* * ** **** **** * * **
consensus_5149#0 -GGTATC-GAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCA 880
consensus_5149#2 -GGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGA 378
consensus_5149#1 CAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCA 575
* * * ** ** * * * * * * * ** *
consensus_5149#0 CAGTACCT-TGTTCTC----GAGTAGGGCACATCCAGAAGAC--GGGCCACCCG-TATCT 932
consensus_5149#2 CGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCT 438
consensus_5149#1 TCGCTCACGTGGCAACCA-GGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCA 634
* * ** * * ** * * * ** * * * * *
consensus_5149#0 TT----ACAAACAACCGAAAGACGTTGTG-CGT--GCGAAC-TCGATCC-GGCTGGCCGA 983
consensus_5149#2 TCCACAACCGAAAAGAANGGGACGTTGTGGCGTT-GCGAACCTCGATCCCGGCTG----- 492
consensus_5149#1 TCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT----------- 683
* ** ** * ** *** * *** * *
consensus_5149#0 GGTGTGGATGGACGAGTACAA 1004
consensus_5149#2 ---------------------
consensus_5149#1 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||