These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence [TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCCCCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAACGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGT--GTGAG--TG-TGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACACACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATGA] [+] EMBL BX608600 [TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCCCCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAACGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGT GTGAG TG TGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACACACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTC ] [+] EMBL BX621592 [ GTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGAGTGTGTATGATGAGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAACTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAAACATAAACACACATACAACACACAAAATGTGGAAGAAATTAAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTAAGCAAGTGTGC GGTGGGTGCGTGTTGTACAAAAACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTTGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATGA] consensusID : consensus_5156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGTAGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTTAGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATAGGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC] [+] EMBL AL694375 [GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGTAGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTTAGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATAGGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC] consensusID : consensus_5156#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAAATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT] [+] EMBL AL695989 [AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAAATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5156#0 TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCC 60 consensus_5156#1 ------------------------------------------------------------ consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 CCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAA 120 consensus_5156#1 ------------------------------------------------------------ consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 CGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCA 180 consensus_5156#1 ------------------------------------------------------------ consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 AAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGTGA 240 consensus_5156#1 ------------------------------------------------------------ consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 GTGTGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTAC 300 consensus_5156#1 ------------------------------------------------------------ consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 TGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACAC 360 consensus_5156#1 --------------------------------------------------------GCCC 4 consensus_5156#2 ----------------------------------------------------------AA 2 consensus_5156#0 ACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTA 420 consensus_5156#1 G-AGGTTACACACAAAATGTGGAAGAAATTTAAACGTAAT--AAAAAAACCCTGTTTGTA 61 consensus_5156#2 GAAATTTAAACGTAAA---TAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAA 59 * * ** *** * ** *** * *** * *** * consensus_5156#0 GTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATG-TTAGCAAGTGTG--- 476 consensus_5156#1 GTTAA-TTATTCAATTTTACCGATTAGTAAACGAATCGCAAATG-TTAGCAAGTGTG--- 116 consensus_5156#2 ---AATTTATTCAAGTTTTACGATTAGTAA-CGAATCGCAAATGGTTAGCAAAGGTGGTG 115 ** ******** *** ********** ************* ******* *** consensus_5156#0 CGGGGGGGG-GGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTT 535 consensus_5156#1 CGGGGGGGG-GGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTT 175 consensus_5156#2 CGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTT 175 ********* ******************** ***************************** consensus_5156#0 TGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTA 595 consensus_5156#1 TGGTTAGTCGTCGTC-TTCCCTCCCATCCCAATATA-TTCCACC-ATTTCTTCGTACTTA 232 consensus_5156#2 TGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACC-ATTTCTTCGT----- 229 ** ************ ******************** ******* ********** consensus_5156#0 TAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATT 655 consensus_5156#1 TTAGCATAG--GGAAGTT-AAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATT 289 consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 CTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTA 715 consensus_5156#1 CTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTA 349 consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 AAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGC 775 consensus_5156#1 GAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGC 409 consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 A-GTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAAT 834 consensus_5156#1 ACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAAT 469 consensus_5156#2 ------------------------------------------------------------ consensus_5156#0 CGCATGA---------------------------------- 841 consensus_5156#1 CG-ATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC 509 consensus_5156#2 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||