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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1155 fasta sequence
[CCGAGGTAAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGATATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAATTTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCCTAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCGCGG-TAGTCGTCCTCTGTCCACGTTATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAA-AAGTGGGTAAAATCAGAA-AAAGGACTCACATCGAATACGAAAATCT-CCTC-CCTTGACACAACTTAATCG-CTTTGTGCGCGCACAAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTATGGAAAACTAAAAGACAGCCATCACTTTCACGCACTCTAGGATCGATCCTTGGAACCATTGCAAGGGTTTCCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAACATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGGTTCAATGCAAAAACAAATATGCGTTAAGGCAATAAAGGGGACAGAGAGAGAGACAAATATGCTACAAGTACAAGGCGCAACAGAAAGGGGGCTTGGCCGTTAAGGGAAAGGCATTTCCTAAGTAACCAGGCCATAAGCCTATCCGGTGGTTAACTTGTACACACACACGGGACGTTACACAAACTGGTGGAAACCGAATTAAAACACGGAAATGGCACCACNTAAAAGCAAGGGNATTTCGGGTCGGTTNGGGAGCACTTCNTTANAAAGGNTTGGAACNCGGGNTAAACGATGNGGTGGTATCACAACTGGGGTTGACCCTTAAAAGGNTGAAAACCGGNTTGCCACGCACAGATTGTTGACCGGACTGACGNGNTAGGGAGCCCCAAGATNNGGGTCTTCANAAAGAGGCNTCTTNCGACGGCATTA]
[+] EMBL AL694652 [CCGAGGTAAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGATATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAATTTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCCTAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCGCGG TAGTCGTCCTCTGTCCACG TATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAACAAGTGGGTAAAATCAGAA AAAGGACTCACATCGAATACGAAAATCT CCTCTCTTTGACACAACTTAATCG CTTTGTGCGCGCACAAAACA ACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTATGGAAAACTAAA ]
[+] EMBL AL694536 [CCGAGGTTAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGATATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAATTTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCCTAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCGCGGCTAGTCGTCCTCTGTCCACGTTATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAA AAGTGGGTAAAATCAGAACANAGGACTCACATCGAATACGAAAATCTCCCTC TCTTGACNCAACTTNNTCGCCTTCGTGCGCGCAC AAACACACCAACACACAcgct ]
[+] EMBL BX467922 [ gcaagAATCGGCACGA T GGCGACCTCTGTCCACGTTATTTCGTATGCGCACGGGGAAGCGAAAACTATCGAATGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGCGAACGAAACGCACCGCCGTTGCATACGGGCGGAAAAGAAAAACAGAACAAA AAATGGTTAAAATCAGAA AAAGGACTCACATCGAATACGAAAATCT CCTC CCTTGACACAACTTAATCG CTTTGTGCGCGCACAACACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTTTGG AAACTAAAAGACAGCCATCACTTTCACGCACTCTAGGATCGATCCTTGGAACCATTGCAAGGGTTTCCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAACATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGGTTCAATGCAAAAACAAATATGCGTTAAGGCAATAAAGGGGACAGAGAGAGAGACAAATATGCTACAAGTACAAGGCGCAACAGAAAGGGGGCTTGGCCGTTAAGGGAAAGGCATTTCCTAAGTAACCAGGCCATAAGCCTATCCGGTGGTTAACTTGTACACACACACGGGACGTTACACAAACTGGTGGAAACCGAATTAAAACACGGAAATGGCACCACNTAAAAGCAAGGGNATTTCGGGTCGGTTNGGGAGCACTTCNTTANAAAGGNTTGGAACNCGGGNTAAACGATGNGGTGGTATCACAACTGGGGTTGACCCTTAAAAGGNTGAAAACCGGNTTGCCACGCACAGATTGTTGACCGGACTGACGNGNTAGGGAGCCCCAAGATNNGGGTCTTCANAAAGAGGCNTCTTNCGACGGCATTA]
consensusID : consensus_5165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCGCGAAAATCTCCTCCCTTGACACAACTTAATCGCTATGTGCGCGCACAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTTTGGAAACTAAAAGACAGCCATCACTTTCACGCACTATAGGATCGATCCTTGGAACCATTGCATAGGGTTTGCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAATATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGTTAATGCGAAAACAAATATGCGTAAGGCAATAAAGGGAAACACATTAATACAAGCGAAAATACAAGCGAAAGAAAGGGCTGCCTTAGGAAGCATTCTAGTAACAGCATAGCTATCGTGTAATGTAAAAAGGAGTAAAAATGTTAACGATAAACAGAATGCACACTGTATTGTGTTATCTCTAAAGTGACCGTTAGTGTGTCCACTGTCCTAAACTAACGTTCACAATGTCGTTGTGTGGCCCATTTGTCTCAAAGCCTCAGCATATTCGTCGCAGCTTCCATGTACGCACAAAACATACGCACACACACAGTAAACCCAGGGGAGGTGTTTGCGCATAACTGTTGCTAATGTGTCTTACATCAACGCGCAAACTTAGTACGCAAAAGGGTATATGGGCAGCATAGCT]
[+] EMBL BM636335 [CCGCGAAAATCTCCTCCCTTGACACAACTTAATCGCTATGTGCGCGCACAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCCGTTTGGAAACTAAAAGACAGCCATCACTTTCACGCACTATAGGATCGATCCTTGGAACCATTGCATAGGGTTTGCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAAACGTCTGTGCTTGGAATAAAGAAGCTAATATTGTCTTTCTATCCCGTATCTTGTGTGCTTCTGTTGTTAATGCGAAAACAAATATGCGTAAGGCAATAAAGGGAAACACATTAATACAAGCGAAAATACAAGCGAAAGAAAGGGCTGCCTTAGGAAGCATTCTAGTAACAGCATAGCTATCGTGTAATGTAAAAAGGAGTAAAAATGTTAACGATAAACAGAATGCACACTGTATTGTGTTATCTCTAAAGTGACCGTTAGTGTGTCCACTGTCCTAAACTAACGTTCACAATGTCGTTGTGTGGCCCATTTGTCTCAAAGCCTCAGCATATTCGTCGCAGCTTCCATGTACGCACAAAACATACGCACACACACAGTAAACCCAGGGGAGGTGTTTGCGCATAACTGTTGCTAATGTGTCTTACATCAACGCGCAAACTTAGTACGCAAAAGGGTATATGGGCAGCATAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5165#0 CCGAGGTAAGAGCTAGGGGGGCGATCGGTGAAGGCGATCGGTCTTATTCTAAAAGGGTGA 60
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 TATATTACTTCTTAAATCAACCAGTTGCAAAACCGAGTTACGATATTTTATACTCTTAAT 120
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 TTCATTCAGTGGATCGTAAAATCAATAGAGCTTTTCCTTAAAAGTACACCCAATTTTCCC 180
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 TAGAGCGTTCTTTGACCCAAAAATAGAACAGGAAGAAGCTTCCAACGATCCCAAGCGCCG 240
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 CGGTAGTCGTCCTCTGTCCACGTTATTTCGTATGCGCACGGGAAAGCGAAAACTATCGAA 300
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 TGAAATTTATTATTCTACTTTGTACCTGGCTACCGTTGGCCTCGTGTGTTCACCGTTGGC 360
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 GAACGAAACGCACCGCCGTTGCATACGGGCAGAAAAGAAAAACAGAACAAAAAGTGGGTA 420
consensus_5165#1 ------------------------------------------------------------
consensus_5165#0 AAATCAGAAAAAGGACTCACATCGAATACGAAAATCTCCTCCCTTGACACAACTTAATCG 480
consensus_5165#1 -------------------------CCGCGAAAATCTCCTCCCTTGACACAACTTAATCG 35
********************************
consensus_5165#0 CTTTGTGCGCGCACAAAACACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCC 540
consensus_5165#1 CTATGTGCGCGCACAAA-CACACCAACACACAGTAAAGACAGTAGAATGGATCATAATCC 94
** ************** ******************************************
consensus_5165#0 GTATGGAAAACTAAAAGACAGCCATCACTTTCACGCACTCTAGGATCGATCCTTGGAACC 600
consensus_5165#1 GTTTGGAAA-CTAAAAGACAGCCATCACTTTCACGCACTATAGGATCGATCCTTGGAACC 153
** ****** ***************************** ********************
consensus_5165#0 ATTGCA-AGGGTTTCCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAA 659
consensus_5165#1 ATTGCATAGGGTTTGCCTGGAGCCTGGAGCCATCAAATGAAGTACAATATTTATAGCCAA 213
****** ******* *********************************************
consensus_5165#0 ACGTCTGTGCTTGGAATAAAGAAGCTAACATTGTCTTTCTATCCCGTATCTTGTGTGCTT 719
consensus_5165#1 ACGTCTGTGCTTGGAATAAAGAAGCTAATATTGTCTTTCTATCCCGTATCTTGTGTGCTT 273
**************************** *******************************
consensus_5165#0 CTGTTGGTTCAATGCAAAAACAAATATGCGTTAAGGCAATAAAGGGGACAGAGAGAGAGA 779
consensus_5165#1 CTGTTG--TTAATGCGAAAACAAATATGCGT-AAGGCAATAAAGG-----------GAAA 319
****** * ***** *************** ************* ** *
consensus_5165#0 CAAATATGCTACAAGTACAAGGCGCAACAGAAAGGGGGCTTGGCCGTTAAGGGAAAGGCA 839
consensus_5165#1 CACAT-TAATACAAGCG-AAAATACAAGCGAAAGAAAGGGCTGCCTTAGGAAGCATTCTA 377
** ** * ****** ** *** ***** * *** * * * *
consensus_5165#0 TTTCCTAAGTAACCAGGCCATAAGCCTATCCGGTGGTTAACTTGTACAC-ACACACGGGA 898
consensus_5165#1 GTAACAGCATAGCTATCGTGTAA-TGTAAAAAGGAGTAAAAATGTTAACGATAAACAGAA 436
* * ** * * *** ** * ** ** *** ** * * ** * *
consensus_5165#0 CGTTACACAAACTGGTGGAAAC-CGAATTAAAACACGGAAATGGCACCACNTAAAAGCAA 957
consensus_5165#1 TGC-ACACTGTATTGTGTTATCTCTAAAGTGACCGTTAGTGTGTCCACTGTCCTAAACTA 495
* **** * *** * * * ** * * ** * * ** * *
consensus_5165#0 GGGNATTTCGGGTCGGTTNGGGAGCACTTCNTTANAAAGGNTTGGAACNCGGGNTA-AAC 1016
consensus_5165#1 ACGTTCACAATGTCGTTGTGTGGCCCATTTGTCTCAAAGCCTCAGCATATTCGTCGCAGC 555
* **** * * * * ** * **** * * * * * *
consensus_5165#0 GATGNGGTGGTATCACAACTGGGGTTGACCCTTAAAAGGNTGAAAACCGGNTTGCCACGC 1076
consensus_5165#1 TTCCATGTACGCACAAAACATACGCACACACACAGTAAACCCAGGGGAGGTGT-TTGCGC 614
** ** *** * ** * * * * ** * ***
consensus_5165#0 ACAGATTGTTGACCGGACTGACGNGNTAGGGAGCCCCAAGATNNGGGTCTTCANAAAGAG 1136
consensus_5165#1 ATA-ACTGTTG------CTAATGTGTCTTACATCAACGCG--CAAACTTAGTACGCAAAA 665
* * * ***** ** * * * * * * * * * * *
consensus_5165#0 GCNTCTTNCGACGGCATTA-- 1155
consensus_5165#1 GGGTATATGGGCAGCATAGCT 686
* * * * * ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||