These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 702 fasta sequence [CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCTATTGCTATCGGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTCATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGGACGCTCCGGAGAATTCGCATTTCGTCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGCGAACAGTGCGGCAAGGCCGATCTGCTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGATGTGGATTCTCTCTCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAAAATCGCACTCTTTTTACAGGGTTAAAAAAAAAAAAAAAAAAG] [+] EMBL CNS091YJ [CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCTATTGCTATCGGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTCATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGGACGCTCCGGAGAATTCGCATTTCGTCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGCGAACAGTGCGGCAAGGCCGATCTGCTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGATGTGGATTCTCTCTCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAAAATCGCACTCTTTTTACAGGGTTAAAAAAAAAAAAAAAA ] [-] EMBL CNS09RWC [ CGGAACCGGCGGTGCGGTCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTTCATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGAT TCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAAAATCGCGCTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAG] consensusID : consensus_5168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CAGATCCCGAGGTTATAGCGCTGTTATCTAGCAGCGTCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNNATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTCGGATGCGGCACCATTCATTGCAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCGCATTTTCATCTACGTACGATGTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATCCTTTCCGCCAAGGCACACTAACACGCATCTGTCCGTACATATCCAGACATGATCCGGATGGAAGCAGCCGCAGACGCCTCGAAGGTGCAACAGATGTGGCAAGGCGACCTGCTGGAACTGTACTNCNTCGGAANGACGACCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGTTGGNATTCTCTACTCTCGTGTACAAATATGTCATATNAGACGCAATAAAATCGCACTCTTATACAGGGTTCGGCGCGCAAA] [+] EMBL AL694650 [CAGATCCCGAGGTTATAGCGCTGTTATCTAGCAGCGTCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNNATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTCGGATGCGGCACCATTCATTGCAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCGCATTTTCATCTACGTACGATGTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATCCTTTCCGCCAAGGCACACTAACACGCATCTGTCCGTACATATCCAGACATGATCCGGATGGAAGCAGCCGCAGACGCCTCGAAGGTGCAACAGATGTGGCAAGGCGACCTGCTGGAACTGTACTNCNTCGGAANGACGACCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGTTGGNATTCTCTACTCTCGTGTACAAATATGTCATATNAGACGCAATAAAATCGCACTCTTATACAGGGTTCGGCGCGCAAA] consensusID : consensus_5168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [GCTCTACTGGAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATTCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCGGTACGCAGCGATCACAGGGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTTCATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGATTCTCTCGGGTTAAAATATGTATAT] [+] EMBL CNS09RWB [GCTCTACTGGAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATTCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCGGTACGCAGCGATCACAGGGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTTCATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGATTCTCTCGGGTTAAAATATGTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5168#0 CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGC 60 consensus_5168#2 --------------------------------GCTCTACTGGA--GAAAATTGATAGCGC 26 consensus_5168#1 --------------------------------------CAGATCCCGAGGTT-ATAGCGC 21 * * * ** ******* consensus_5168#0 TGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTC 120 consensus_5168#2 TGTTATCTAGCAGCGTCCCTCAAGCATTCCAATATAGCGACAAGTGGACAATACACTGTC 86 consensus_5168#1 TGTTATCTAGCAGCGTCC-TCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTC 80 ****************** ******** ******************************** consensus_5168#0 TCTATTGCTATC-GGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTA 179 consensus_5168#2 TCCATTGCTATC-GGTACGCAGCGATCACAGGGTCACGGGTTTTGTTCAGAGCACTGTTA 145 consensus_5168#1 TCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGGTTTTGTTCAGAGCACTGTTA 140 ** ********* ****************** * ************************** consensus_5168#0 TAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCA 239 consensus_5168#2 TAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCA 205 consensus_5168#1 TAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCA 200 ************************************************************ consensus_5168#0 TTCATGAAAGACTTCAACGGAAACGGCGGTGC-GATC--AATATTCTCTTCACCGGCGCA 296 consensus_5168#2 TTTATGAAAGACTTCAACGGAAACGGCGGTGC-GATC--AATATTCTCTTCACCGGCGCA 262 consensus_5168#1 TTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNNATATTCTCTTCACCGGCGCA 260 ** ***************************** **** ******************** consensus_5168#0 AAGCTCGAGAATGGTTTGAGCTGGTGTGGT-GACTGCGTCG-ATGCGGCACCATACATTG 354 consensus_5168#2 AAGCTCGAGAATGGTTTGAGCTGGTGTGGT-GACTGCGTCG-ATGCGGCACCATACATTG 320 consensus_5168#1 AAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTCGGATGCGGCACCATTCATTG 320 ******************* ********* ***** **** ************ ***** consensus_5168#0 AG--AAAGCGATCGAAACGGAC-GCTCCGGAG--AATTCGCATTT-CGTCTACGT-CGAT 407 consensus_5168#2 AG--AAAGCGATCGAAACGAAC-GCTCCGGAG--AATTCGCATTT-CATCTACGT-CGAT 373 consensus_5168#1 CAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCGCATTTTCATCTACGTACGAT 380 ** ************ ** ******* *********** * ******* **** consensus_5168#0 GTGGGCGATCGTCCAACCTGGAAGG-ATATGAACA--ATCCTTTCCGCAAGG--ACACTA 462 consensus_5168#2 GTGGGCGATCGTCCAACCTGGAAGG-ATATGAACA--ATCCTTTCCGCAAGG--ACACTA 428 consensus_5168#1 GTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATCCTTTCCGCCAAGGCACACTA 440 ********************* ** **** *** *********** * * ****** consensus_5168#0 ACACGCATCTGTCCGT-CAT-TCCGACCATGATCCGG-TGGAAGCAGCCGCAG-CGCCTC 518 consensus_5168#2 ACACGCATCTGTCCGT-CAT-TCCGACCATGATCCGG-TGGAAGCAGCCGCAG-CGCCTC 484 consensus_5168#1 ACACGCATCTGTCCGTACATATCCAGACATGATCCGGATGGAAGCAGCCGCAGACGCCTC 500 **************** *** *** ********** *************** ****** consensus_5168#0 GAAGGCG-AACAG-TGCGGCAAGGCCGATCTGCTGGAACTGTTCTTTTC--GGAAGACGA 574 consensus_5168#2 GAAGGTG-AACAG-TGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTC--GGAAGACGA 540 consensus_5168#1 GAAGGTGCAACAGATGTGGCAAGGC-GACCTGCTGGAACTGTACTNCNTCGGAANGACGA 559 ***** * ***** ** ******** ** *** ********* ** * * ***** consensus_5168#0 CTAA--AGCGATATCGC-GAAACGGGAATGACGATCGATGTGGATTCTCTCT-CTCTCGT 630 consensus_5168#2 CTAA--AGCGATATCGC-GAAACGGGAATGACGATCGTTGTGGATTCT-------CTCGG 590 consensus_5168#1 CCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGTTGGNATTCTCTACTCTCGT 619 * * ******** ** ******************* ** * * **** consensus_5168#0 GTTAAAATATGTATATTTTGTTCGCAATAAAATCGCACTCTTTTTACAGGGTTAAAAAAA 690 consensus_5168#2 GTTAAAATATGTATAT-------------------------------------------- 606 consensus_5168#1 GTACAAATATGT-CATATNAGACGCAATAAAATCGCACTCTTAT-ACAGGGTTCGGCGCG 677 ** ******** ** consensus_5168#0 AAAAAAAAAAAG 702 consensus_5168#2 ------------ consensus_5168#1 CAAA-------- 681 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||