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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1688 fasta sequence
[GACAGAGCCGCGTGGAAGCACTGGTACGTAAGTTCCTACCCTAGTTCCCATCCCCGACTGACGGTCCACGGAAAGGCAGGNCCTGCAGGATGGTGCAGTAGAGTACACTGCTGTGGTTTCAGTTAGAGCTGTTGTTGCTGTCGCTTAGACGCTACATTAGTTGCTTTAGAAAAGTTGGTTTGTTTGTAGGGTTTTCTGTTTTGTACAAAAAAAAAACACACACGCGCACGTTTAGCCTATGTACAGGAACAGCCAGGCCCCGGCTTGTAACTGGCTGGCGGATGATCGCGTACCAGCAAACTCAGTGCAATAGTAGTGTCCATGAGCGATTGTGTAGCCACAGTATCTTATAACATGTGTTTCTCCCTCTCTCTCTCCCTCTCTCTAGATTAGTCATTTAGTTAGTGTGGCTAGTACCCCTCGAGTATGGCTAGAAAGGCAAGGATGATGCTAGGATGATTTAGTGCTTCGCTCAGTATAGTTTTGTATGTTTGACTAAAAAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCNCCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGAACCTTTTCTAAGAATGCAGTACGAAAAACAATGATCGTCTTTTGCAGATTACAGGCCATTAAAAACAAAACAGTAAAGCGCTGTTTCTAAACGGTAAAATTGTAAAAGTAAAAAGTTCACCGAAGTAAAGGTAGCAGAATTAAAACCGAAACCTACAGACTGCTAGTATCAGTATCCCTATGACAAGAGTTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTTGTCTCTCTGTGTCCCTCTAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTTGACTCAACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACACCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAATGTTACCACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAAATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGCGCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACTTCAGATCCATCTCTTCGCTGCTTTCTTCTGCACTTTCGTTATTACTGTCCGATTGTTCCGTCTGTTTGTTCTTTGTGTCGCGCGCTTTTTCGGGTGCGGAGGATGACGACGACGGCTTCACCGGCGCCGGTAGTTCGCCACCATTGCTGGGTGCGTCGTCCCGCGCCGCCCCACCCACGCGTCCGCCCACGCGTCCGCGG]
[-] EMBL BX628920 [GACAGAGCCGCGTGGAAGCACTGGTACGTAAGTTCCTACCCTAGTTCCCATCCCCGACTGACGGTCCACGGAAAGGCAGGNCCTGCAGGATGGTGCAGTAGAGTACACTGCTGTGGTTTCAGTTAGAGCTGTTGTTGCTGTCGCTTAGACGCTACATTAGTTGCTTTAGAAAAGTTGGTTTGTTTGTAGGGTTTTCTGTTTTGTACAAAAAAAAAACACACACGCGCACGTTTAGCCTATGTACAGGAACAGCCAGGCCCCGGCTTGTAACTGGCTGGCGGATGATCGCGTACCAGCAAACTCAGTGCAATAGTAGTGTCCATGAGCGATTGTGTAGCCACAGTATCTTATAACATGTGTTTCTCCCTCTCTCTCTCCCTCTCTCTAGATTAGTCATTTAGTTAGTGTGGCTAGTACCCCTCGAGTATGGCTAGAAAGGCAAGGATGATGCTAGGATGATTTAGTGCTTCGCTCAGTATAGTTTTGTATGTTTGACTAAAAAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCNCCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCT ]
[+] EMBL CNS08MBN [ ATCAACGCTACTGCTGCGCGCACCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGAACCTTTTCTAAGAATGCAGTACGAAAAACAATGATCGTCTTTTGCAGATTACAGGCCATTAAAAACAAAACAGTAAAGCGCTGTTTCTAAACGGTAAAATTGTAAAAGTAAAAAGTTCACCGAAGTAAAGGTAGCAGAATTAAAACCGAAACCTACAGACTGCTAGTATCAGTATCCCTATGACAAGAGTTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTTGTCTCTCTGTGTCCCTCTAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTTGACTCAACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACACCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAATGTTACCACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAAATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGCGCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACTTCAGATCCATCTCTTCGCTGCTTTCT ]
[-] EMBL BM624721 [ AATTAAACCCGAACCTTACAGACTGCTAGTATCAGTATCCCTATGACAAGAGTTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTAGTCTCTCTGTGTCCCTCTAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTAGACTCAACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACACCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAATGTTAAAACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAAATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGCGCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACTTCAGATCCATCTCTTCGCTGCTTTCTTCTGCACTTTCGTTATTACTGTCCGATTGTTCCGTCTGTTTGTTCTTTGTGTCGCGCGCTTTTTCGGGTGCGGAGGATGACGACGACGGCTTCACCGGCGCCGGTAGTTCGCCACCATTGCTGGGTGCGTCGTCCCGCGCCGCCCCACCCACGCGTCCGCCCACGCGTCCGCGG]
consensusID : consensus_5174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[TCGTCCCTGCNCTGCGCNCCGCTGCTCTCTAGATTTAGTCANGTAGTTAGTGTGGCTAGTACCCCNTCGAGTATGGCTAGGANAGAGGCAAGGATGATGCTAGGATGAGTGTTAGTGCTTCGGGTCAGTATAGTGTTTGTATGTTTGAGCTNGGNNNAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCACCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGACCTTTTCTAAGATACCTCGGGGGATTCTT]
[-] EMBL AL694796 [TCGTCCCTGCNCTGCGCNCCGCTGCTCTCTAGATTTAGTCANGTAGTTAGTGTGGCTAGTACCCCNTCGAGTATGGCTAGGANAGAGGCAAGGATGATGCTAGGATGAGTGTTAGTGCTTCGGGTCAGTATAGTGTTTGTATGTTTGAGCTNGGNNNAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCACCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGACCTTTTCTAAGATACCTCGGGGGATTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5174#0 GACAGAGCCGCGTGGAAGCACTGGTACGTAAGTTCCTACCCTAGTTCCCATCCCCGACTG 60
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 ACGGTCCACGGAAAGGCAGGNCCTGCAGGATGGTGCAGTAGAGTACACTGCTGTGGTTTC 120
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 AGTTAGAGCTGTTGTTGCTGTCGCTTAGACGCTACATTAGTTGCTTTAGAAAAGTTGGTT 180
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 TGTTTGTAGGGTTTTCTGTTTTGTACAAAAAAAAAACACACACGCGCACGTTTAGCCTAT 240
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 GTACAGGAACAGCCAGGCCCCGGCTTGTAACTGGCTGGCGGATGATCGCGTACCAGCAAA 300
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 CTCAGTGCAATAGTAGTGTCCATGAGCGATTGTGTAGCCACAGTATCTTATAACATGTGT 360
consensus_5174#1 --------------------------------------------------------TCGT 4
**
consensus_5174#0 TTCTCCCTCTCTCTCTCCCTCTCTCTAGATT-AGTCATTTAGTTAGTGTGGCTAGTACCC 419
consensus_5174#1 CCCTGCNCTGCGCNCCGCTGCTCTCTAGATTTAGTCANGTAGTTAGTGTGGCTAGTACCC 64
** * * * * * *********** ***** *********************
consensus_5174#0 CT-CGAGTATGGCTAGAAA---GGCAAGGATGATGCTAGGATGATT--TAGTGCTTCGC- 472
consensus_5174#1 CNTCGAGTATGGCTAGGANAGAGGCAAGGATGATGCTAGGATGAGTGTTAGTGCTTCGGG 124
* ************* * ********************** * **********
consensus_5174#0 TCAGTATAGT-TTTGTATGTTTGA---CTAAAAAAGCGTATCAGAGTTACAAATAGGGGG 528
consensus_5174#1 TCAGTATAGTGTTTGTATGTTTGAGCTNGGNNNAAGCGTATCAGAGTTACAAATAGGGGG 184
********** ************* ***************************
consensus_5174#0 GGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCNCCACTTT 588
consensus_5174#1 GGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCACCACTTT 244
**************************************************** *******
consensus_5174#0 GGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAA 648
consensus_5174#1 GGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAA 304
************************************************************
consensus_5174#0 ATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACAC 708
consensus_5174#1 ATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACAC 364
************************************************************
consensus_5174#0 GCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGT 768
consensus_5174#1 GCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGT 424
************************************************************
consensus_5174#0 AGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTT 828
consensus_5174#1 AGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTT 484
************************************************************
consensus_5174#0 TCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGAACCTTTTCT 888
consensus_5174#1 TCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGA-CCTTTTCT 543
*************************************************** ********
consensus_5174#0 AAGAATGCAGTACGAAAAACAATGATCGTCTTTTGCAGATTACAGGCCATTAAAAACAAA 948
consensus_5174#1 AAGA---TACCTCGGGGGATTCTT------------------------------------ 564
**** * ** * *
consensus_5174#0 ACAGTAAAGCGCTGTTTCTAAACGGTAAAATTGTAAAAGTAAAAAGTTCACCGAAGTAAA 1008
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 GGTAGCAGAATTAAAACCGAAACCTACAGACTGCTAGTATCAGTATCCCTATGACAAGAG 1068
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 TTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTTGTCTCTCTGTGTCCCTC 1128
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 TAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTTGACTCA 1188
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 ACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACA 1248
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 CCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAAT 1308
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 GTTACCACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAA 1368
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 ATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGC 1428
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 GCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACT 1488
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 TCAGATCCATCTCTTCGCTGCTTTCTTCTGCACTTTCGTTATTACTGTCCGATTGTTCCG 1548
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 TCTGTTTGTTCTTTGTGTCGCGCGCTTTTTCGGGTGCGGAGGATGACGACGACGGCTTCA 1608
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 CCGGCGCCGGTAGTTCGCCACCATTGCTGGGTGCGTCGTCCCGCGCCGCCCCACCCACGC 1668
consensus_5174#1 ------------------------------------------------------------
consensus_5174#0 GTCCGCCCACGCGTCCGCGG 1688
consensus_5174#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||