cluster # 5176

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Anopheles gambiae
cluster # 5176 cluster # 5176 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5176#0 length = 697 sequences # 1
consensus_5176#1 length = 693 sequences # 1

consensus_5176#2 length = 540 sequences # 1
consensus_5176#3 length = 133 sequences # 1

consensusID : consensus_5176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCATACCGGTACCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTTCAAAATGACGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACCTTCCCAACCACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAGAAAGGCATACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAACGCCCCAAAAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGGGGGGGAGTGCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTAAACAATTTGTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTTATATATTTGTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGAAAAGGTACGAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGAATATGGTGAAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGTTAAAACGATGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA]

[+] EMBL BM623667             [CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCATACCGGTACCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTTCAAAATGACGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACCTTCCCAACCACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAGAAAGGCATACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAACGCCCCAAAAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGGGGGGGAGTGCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTAAACAATTTGTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTTATATATTTGTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGAAAAGGTACGAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGAATATGGTGAAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGTTAAAACGATGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA]




>consensus_5176#0
CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCATACCGGTA
CCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTTCAAAATGA
CGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACCTTCCCAAC
CACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAGAAAGGCAT
ACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAACGCCCCAA
AAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGGGGGGGAGT
GCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTAAACAATTT
GTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTTATATATTT
GTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGAAAAGGTAC
GAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGAATATGGTG
AAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGTTAAAACGA
TGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA

consensusID : consensus_5176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [TCCCCCGAGGTTAAATGGAGGCGAAGCTAGGCTCCCAAACAGAGGGGAGGGCCGAGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCACACATACATGTAGAAACAAGATACACACACACAAACAGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATCAATCATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACACCCGCGGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGACGCTCAGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAAGCAGCACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCGTCATTAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACANNTGCTAGCANCACGCACATAAACTTANCGCCCC]

[+] EMBL AL694805             [TCCCCCGAGGTTAAATGGAGGCGAAGCTAGGCTCCCAAACAGAGGGGAGGGCCGAGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCACACATACATGTAGAAACAAGATACACACACACAAACAGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATCAATCATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACACCCGCGGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGACGCTCAGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAAGCAGCACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCGTCATTAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACANNTGCTAGCANCACGCACATAAACTTANCGCCCC]




>consensus_5176#1
TCCCCCGAGGTTAAATGGAGGCGAAGCTAGGCTCCCAAACAGAGGGGAGGGCCGAGTCAA
GACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATA
AACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAA
TATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGG
AAAGTGCAGGTCATAGTAGAACAAACCACACATACATGTAGAAACAAGATACACACACAC
AAACAGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATC
AATCATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACAC
CCGCGGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGAC
GCTCAGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAA
GCAGCACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCG
TCATTAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACAN
NTGCTAGCANCACGCACATAAACTTANCGCCCC

consensusID : consensus_5176#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAAAGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAACAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCAAACCAAGAGAGACAGACACACACAAAGAAAAGTGAAAAAAAAACAGCAAACGAAATGGAGGCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAACAGATACACACAC]

[+] EMBL BM638816             [CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAAAGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAACAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCAAACCAAGAGAGACAGACACACACAAAGAAAAGTGAAAAAAAAACAGCAAACGAAATGGAGGCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAACAGATACACACAC]




>consensus_5176#2
CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAA
AGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAA
CAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCA
AACCAAGAGAGACAGACACACACAAAGAAAAGTGAAAAAAAAACAGCAAACGAAATGGAG
GCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCAAGACATAAGCAACAGTATAA
CAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATG
AAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCG
AGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAG
AACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAACAGATACACACAC

consensusID : consensus_5176#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 133
fasta sequence

                              [TGCCACACCACAGGAGCCACACGCGCACACGCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGAC]

[+] EMBL BX612445             [TGCCACACCACAGGAGCCACACGCGCACACGCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGAC]




>consensus_5176#3
TGCCACACCACAGGAGCCACACGCGCACACGCGGGTAATGAAACGAGGAGAATAAAGAGT
AAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGG
CTCCGTGATGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5176#2      CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAA 60
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      ------------------------------------------------------------
consensus_5176#0      --------CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCA 52
                                                                                  

consensus_5176#2      AGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAA 120
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      ------------------------------------------------------------
consensus_5176#0      TACCGGTACCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTT 112
                                                                                  

consensus_5176#2      CAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCA 180
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      ------------------------------------------------------------
consensus_5176#0      CAAAATGACGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACC 172
                                                                                  

consensus_5176#2      AACCAAGAGAGACAGACACACACAAAGAA-AAGTGAAAAAAAAACAGCAAACG---AAAT 236
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      -----------------------------------------TCCCCCGAGGTT---AAAT 16
consensus_5176#0      TTCCCAACCACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAG 232
                                                                                  

consensus_5176#2      GGAGGCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCA---AGACATAAGCAAC 293
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      GGAGGCGAAGCTAGGCTCCCAAAC-AGAGGGGAGGGCCGAGTCA---AGACATAAGCAAC 72
consensus_5176#0      AAAGGCATACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAA 292
                                                                                  

consensus_5176#2      AGTATAACAGTATGTGTATGTGAAGATAAAC-TAATAAACGTAC-TAATAAACTGCACCT 351
consensus_5176#3      --------------------------TGCCA-CACCACAGGAGC-CACACGCGCACACG- 31
consensus_5176#1      AGTATAACAGTATGTGTATGTGAAGATAAAC-TAATAAACGTAC-TAATAAACTGCACCT 130
consensus_5176#0      CGCCCCAAAAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGG 352
                                                          *      *  *          *  

consensus_5176#2      CGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACA-AATAGGAAATATCTAATA 410
consensus_5176#3      CGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACA-AATAGGAAATATCTAATA 90
consensus_5176#1      CGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACA-AATAGGAAATATCTAATA 189
consensus_5176#0      GGGGGAGTGCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTA 412
                       *** * **  *  *     * *****  **** * *** * *** * *  ** * * **

consensus_5176#2      --CAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGC 468
consensus_5176#3      --CAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGAC--------------- 133
consensus_5176#1      --CAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGC 247
consensus_5176#0      AACAATTTGTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTT 472
                        ******       ***     * *      *      *  **                

consensus_5176#2      AGGTCATAGTAGAACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAAC 528
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      AGGTCATAGTAGAACAAACC-ACACATACATGTAGAAACAAGATACACACACACA--AAC 304
consensus_5176#0      ATATATTTGTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGA 532
                                                                                  

consensus_5176#2      AGATACACACAC------------------------------------------------ 540
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      AGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATCAATC 364
consensus_5176#0      AAAGGTACGAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGA 592
                                                                                  

consensus_5176#2      ------------------------------------------------------------
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      ATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACACCCGC 424
consensus_5176#0      ATATGGTGAAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGT 652
                                                                                  

consensus_5176#2      ------------------------------------------------------------
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      GGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGACGCTC 484
consensus_5176#0      TAAAACGATGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA--------------- 697
                                                                                  

consensus_5176#2      ------------------------------------------------------------
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      AGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAAGCAG 544
consensus_5176#0      ------------------------------------------------------------
                                                                                  

consensus_5176#2      ------------------------------------------------------------
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      CACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCGTCAT 604
consensus_5176#0      ------------------------------------------------------------
                                                                                  

consensus_5176#2      ------------------------------------------------------------
consensus_5176#3      ------------------------------------------------------------
consensus_5176#1      TAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACANNTGC 664
consensus_5176#0      ------------------------------------------------------------
                                                                                  

consensus_5176#2      -----------------------------
consensus_5176#3      -----------------------------
consensus_5176#1      TAGCANCACGCACATAAACTTANCGCCCC 693
consensus_5176#0      -----------------------------