cluster # 5178

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Anopheles gambiae
cluster # 5178 cluster # 5178 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5178#0 length = 882 sequences # 3

consensus_5178#1 length = 465 sequences # 1

consensusID : consensus_5178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 882
fasta sequence

                              [CACGCGTCCGCCCACGCGTCCGGCGCGGCACACGGGACGCACAGGTTA--TTTTCTTGACTGGTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAGCAGCAGCACAC-AAAAAATCCCCACCATGGCTGAGGTAGTGGAGGAAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAACCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATGGCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGTCGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCATCCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGTTCTTCAAGATCTTCTCCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCCTCGGCGTGATGGCCCTGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCTCGATTCCGAAGATCCCGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACAAGAAGAGCAAGGAGAAGAAGTATCTCATCGACTACCGCTTCA]

[+] EMBL BM613821             [CACGCGTCCGCCCACGCGTCCGGCGCGGCACACGGGACGCACAGGTTATTTTTTCTTGACTGGTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAGCA CA CACACAAAAAAATCCCCACCATGGCTGAGGTAGTGGAGGAAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAACCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATGGCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGTCGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCATCCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGC                                                                                                                                                                                                                                                ]
[+] EMBL BM588929             [                     ccgGCGGCACACGGGACGCACAAGTTA  TTTTCTTGTCTGGTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCACCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAGCAGCAGCACAC Ac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM644341             [                                                                                                                                                                                                               ccGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAGCAGCAGCTCAC AAAAATTCCCCACCATGGCTGAGGTAGTGGAGGAAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAACTGGAAAAACACCCTCCACACCGGAAGGGATGGCCCTCGCATATGGCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGTCGACGGCATTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCGTCCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGTTCTTCAAGATCTTCTCCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCCTCGGCGTGATGGCCCTGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCTCGATTCCGAAGATCCCGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACAAGAAGAGCAAGGAGAAGAAGTATCTCATCGACTACCGCTTCA]




>consensus_5178#0
CACGCGTCCGCCCACGCGTCCGGCGCGGCACACGGGACGCACAGGTTATTTTCTTGACTG
GTGTAGCGGCGCGTACTAATTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACT
GGGACCATCGTGCCCGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGT
TTTTTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTG
TCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTT
AGCTTAGCAGCAGCAGCAGCAGCACACAAAAAATCCCCACCATGGCTGAGGTAGTGGAGG
AAGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG
GCGCCACGAACGCAACCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATG
GCACGCTGGTCGTGATGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGC
ACCACAAGGAACAGTCGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCAT
CCAAGGATGCGATGATGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGT
TCTTCAAGATCTTCTCCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCC
TCGGCGTGATGGCCCTGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCT
CGATTCCGAAGATCCCGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACA
AGAAGAGCAAGGAGAAGAAGTATCTCATCGACTACCGCTTCA

consensusID : consensus_5178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCGCGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAACTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAGCACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG]

[+] EMBL AL694845             [AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCGCGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAACTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGGGAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTCCATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGCCGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAGCACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGATCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG]




>consensus_5178#1
AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCG
CGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAA
CTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGG
GAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTC
CATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGC
CGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAG
CACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGA
TCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5178#0      --------------------------------CACGCGTCCGCCCACGCGTCCG---GCG 25
consensus_5178#1      AATCCCCCCGAGGTTAGAAGTGAGGTGGCCTTTCTTCGCCTGCTCCAGAAAACGAAAGCG 60
                                                          ** * ** *  *    **   ***

consensus_5178#0      CGGCACACGGGACGCACAGGTTATTTT--CTTG-ACTGGTG--TAGCGGCGCG-TACTAA 79
consensus_5178#1      CGGCACACGGGACGCACAGGTTATTTTTTCTTGCACTGGCTGCTANCGGCGCGCTACTAA 120
                      ***************************  **** *****    ** ******* ******

consensus_5178#0      -TTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCC-GG 137
consensus_5178#1      CTTGTATCATTTGTTGGCCCATCTCCATCCATCCGGGGAACTGGGACCATCGTGCCCTGG 180
                       ******************************************************** **

consensus_5178#0      GAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTT-TGAATGTTCTTC 196
consensus_5178#1      GAGCATCTGTTTGTTTATCTGCTACGTGTGCGGGTGTGTTTGTTTTTCTGAATGTTCTTC 240
                      *********************************************** ************

consensus_5178#0      CATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGC 256
consensus_5178#1      CATCGGGTTCGGGTGCAAATAGTGTAGCCAAACCGCAATACGTGTCACTCGCGTGTGAGC 300
                      ************************************************************

consensus_5178#0      CGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTAGCTTAGCAGCAGCAG 316
consensus_5178#1      CGTGATTAGTAGCGTAGTTGTCGCACAAAGTGTCCCCAAGCTTTGGCTTAGCAGCAGCAG 360
                      ******************************************** ***************

consensus_5178#0      CAGCAGCACACAAAAAATCCCCACCATGGCTGAGGTAGTGGAGGAA-GTGATCGCACAGA 375
consensus_5178#1      CACACACACAAACAAAATCCCCACCATGGCTGAGGTAGTGGAGGAACGTGATCGCACAGA 420
                      **    **** * ********************************* *************

consensus_5178#0      TCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGGGCGCCACGAACGCAA 435
consensus_5178#1      TCCAGGAAAACCTGACCGCCACCGTGACGGAGGGCGAGGAAGGGG--------------- 465
                      *********************************************               

consensus_5178#0      CCGGGAAAACACCCTCCACGCCGGAAGGGATGGCCCTGGCATATGGCACGCTGGTCGTGA 495
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      TGGCGCTGCTGCCCATCTTCTTCGGCTCGATGCGCTCGGTCAAGCACCACAAGGAACAGT 555
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      CGACGGCGTTCGCGAAGACGGGCGAAAAGCCGGACACGATGTCATCCAAGGATGCGATGA 615
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      TGTTCCCGATCATGGCCTCCTGCGCGCTGTTTGGGCTGTACATGTTCTTCAAGATCTTCT 675
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      CCAAGGACAACATCAACTACTTGCTGACCGGGTACTTTTTCTTCCTCGGCGTGATGGCCC 735
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      TGTCCCATCTGCTGAGCCCCGTCATCAGCTCGCTGATTCCGGCCTCGATTCCGAAGATCC 795
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      CGTACCACCTGTCGTTCGTGCAGGGACCGCCGGAGGGCGGCGACAAGAAGAGCAAGGAGA 855
consensus_5178#1      ------------------------------------------------------------
                                                                                  

consensus_5178#0      AGAAGTATCTCATCGACTACCGCTTCA 882
consensus_5178#1      ---------------------------