These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1028 fasta sequence [CCGGGTAAATAAACAACCGCCAGCCGGTTACATCAAAGCGGCATTTTCTCTCCACTAATTTTCCTGTGAGTTCGATAAAAAAAACCCTTTGATGTTGGCTAGCACACGAACATTTCAGCTCAAGGCAAGACTCAAAACATTGCTGCGACAG-CTGCACGATGGTACACAGAGCGAAACATTTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAAAGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGCCAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACACAGCGTGCTGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGGCCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCATCAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAGTTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAGTACAGCTTCGTCGATTTCATGGCGAACGTCGGCCGCCACTTTCGGATGGGAGCGATGCTTTCGCGCTCCTCCGTCCAGACCCGTCTGACGAGCGAGTCCGGCATGAGCTTTACCGAGTTTTCCTACCAGCTGTTCCAGGCGTACGATTGGTTGCATCTGTTGCGCCACAC-AATTGCCGGTTTCAGCTCGGCGGCTCGGACCAGATGGGCAACATCATGTCCGGCCAGGAGCTGATCAGCCGCACAGACGGGAAGGAAGTGTTCGGGCTGACACTGCCCCTCGTCACCAACGAGGAGGGCGACAAGTTCGGCAAGTCGGCGGGCAATGCGGTGTGGCTGTCGGACGACCGCACCTCGCCGTATGCGCTGTACCACTACTTCGTCCGTACGCCCGACTCGGAGGTGGAGAAGCTGTTGCGACTGCTCACCTTTCTGCCGGTG] [+] EMBL BM636507 [CCGGGTAAATAAACAACCGCCAGCCGGTTACATCAAAGCGGCATTTTCTCTCCACTAATTTTCCTGTGAGTTCGATAAAAAAAACCCTTTGATGTTGGCTAGCACACGAACATTTCAGCTCAAGGCAAGACTCAAAACATTGCTGCGACAGCCTGCACGATGGTACACAGAGCGAAACATTTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAAAGCCAGTTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGCCAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACACAGCGTGCTGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGGCCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCATCAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAGTTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAGTACAGCTTCGTCGATTTCATGGCGAACGTCGGCCGCCACTTTCGGATGGGAGCGATGCTTTCGC ] [+] EMBL CNS08KL3 [ CCGGTTACATCAAAGCGGCATTTTCTCTCCACTAATTTTCCTGTGAGTTCGAT AAAAAAACCCTTTGATGTTGGCTAGAACACGAACATTTCAGCTCAAGGCAAGACTCAAAACATTGCTGCGACAC CTGCACGATGGTACACAGAGCGAAACATTTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAAAGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGCCAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACGCAGCGTGCTGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGGCCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCATCAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAGTTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAGTACAGCTTCGTCGATTTCATGGCGAACGTCGGCCGCCACTTTCGGATGGGAGCGATGCTTTCGCGCTCCTCCGTCCAGACCCGTCTGACGAGCGAGTCCGGCATGAGCTTTACCGAGTTTTCCTACCAGCTGTTCCAGGCGTACGATTGGTTGCATCTGTTGCGCCACAC AATTGCCGGTTTCAGCTCGGCGGCTCGGACCAGATGGGCAACATCATGTCCGGCCAGGAGCTGATCAGCCGCACAGACGGGAAGGAAGTGTTCGGGCTGACACTGCCCCTCGTCACCAACGAGGAGGGCGACAAGTTCGGCAAGTCGGCGGGCAATGCGGTGTGGCTGTCGGACGACCGCACCTCGCCGTATGCGCTGTACCACTACT ] [+] EMBL CNS08YSL [ TAAAAAAAACCCTTTGATGTTGGCTAGCACACGAACATTTCATCTCAAGGCAAGACTCAAAACATTGCTGCGACAG CTGCACGATGGTACACAGAGCGAAACATTTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAAAGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGCCAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACACAGCGTGCTGGCCACCAACCGATCGCGCTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGGCCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCATCAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAGTTCGCAAAAAAAGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAGTTCAGCTTCGTCGATTTCATGGCGAACGTCGGCCGCCACTTTCGGATGGGAGCGATGCTTTCGCGCTCCTCCGTCCAGACCCGTCTGACGAGCGAGTCCGGCATGAGCTTTACCGAGTTTTCCTACCAGCTGTTCCAGGCGTACGATTGGTTGCATCTGTTGCGCCACACAAATTGCCGGTTTCAGCTCGGCGGCTCGGACCAGATGGGCAACATCATGTCCGGCCAGGAGCTGATCAGCCGCACAGACGGGAAGGAAGTGTTCGGGCTGACACTGCCCCTCGTCACCAACGAGGAGGGCGACAAGTTCGGCAAGTCGGCGGGCAATGCGGTGTGGCTGTCGGACGACCGCACCTCGCCGTATGCGATGTACCAGTTCTTCGTCCGTACGCCCGACTCGGAGGTGGAGAAGCTGTTGCGACTGCTCACCTTTCTGCCGGTG] consensusID : consensus_5184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 898 fasta sequence [CCAGAATCGNNCACGAGGAGCACACGAACATTTCAGCTCAAGGCAAGACTCAAAACATTGCTGCGACAGCCTGCACGATGGTACACAGAGCGAAACATTTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAAAGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGCCAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACGCAGCGTGCTGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGGCCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCATCAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAGTTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAATACAGCTTCGTCGATTTCATGGCGAACGTCGGCCGCCACTTTCGGGATGGGAGCGATGCTTTCGCGCTCCTCCGTCCAGACCCCGTCTGACGAGCGAGTCCGGGCATGAGCTTTACCGGAGTTTTCCTACCAGCTGGTTCCAGGCGTTCCGATTGGTGTGCATCCTGTTGCGCCCAGGCACAATTGCCGGNTTCANGCTCGGGCGGGTTCNGACCANATGGGGCNAACATTCCAATGGTTCCGGGCCAGGGAACTGATCNAGGCCGGACNCNACACGGGGAAACGGAAAGTGGTCCGGGGCTAACACTGGCCCTTCGTTACCAACNAGGAGGGCAACAANTTTCGGGCAAGTGNCGGCGNGCCAATCNGCGGTTGGCTCTTCGCNAGACCG] [+] EMBL BX467331 [CCAGAATCGNNCACGAGGAGCACACGAACATTTCAGCTCAAGGCAAGACTCAAAACATTGCTGCGACAGCCTGCACGATGGTACACAGAGCGAAACATTTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAAAGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGCCAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACGCAGCGTGCTGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGGCCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCATCAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAGTTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAATACAGCTTCGTCGATTTCATGGCGAACGTCGGCCGCCACTTTCGGGATGGGAGCGATGCTTTCGCGCTCCTCCGTCCAGACCCCGTCTGACGAGCGAGTCCGGGCATGAGCTTTACCGGAGTTTTCCTACCAGCTGGTTCCAGGCGTTCCGATTGGTGTGCATCCTGTTGCGCCCAGGCACAATTGCCGGNTTCANGCTCGGGCGGGTTCNGACCANATGGGGCNAACATTCCAATGGTTCCGGGCCAGGGAACTGATCNAGGCCGGACNCNACACGGGGAAACGGAAAGTGGTCCGGGGCTAACACTGGCCCTTCGTTACCAACNAGGAGGGCAACAANTTTCGGGCAAGTGNCGGCGNGCCAATCNGCGGTTGGCTCTTCGCNAGACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5184#0 CCGGGTAAATAAACAACCGCCAGCCGGTTACATCAAAGCGGCATTTTCTCTCCACTAATT 60 consensus_5184#1 ------------------------------------------------------------ consensus_5184#0 TTCCTGTGAGTTCGATAAAAAAAACCCTTTGATGTTGGCTAGCACACGAACATTTCAGCT 120 consensus_5184#1 ------------------CCAGAA----TCGNNCACGAGGAGCACACGAACATTTCAGCT 38 * ** * * * ******************** consensus_5184#0 CAAGGCAAGACTCAAAACATTGCTGCGACAGC-TGCACGATGGTACACAGAGCGAAACAT 179 consensus_5184#1 CAAGGCAAGACTCAAAACATTGCTGCGACAGCCTGCACGATGGTACACAGAGCGAAACAT 98 ******************************** *************************** consensus_5184#0 TTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAA 239 consensus_5184#1 TTTAAAGCTGAGAGACCGCGGTTTCATACAGGACGTTTTCCCAGCGGAAACGATTGATAA 158 ************************************************************ consensus_5184#0 AGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGC 299 consensus_5184#1 AGCCAGCTCGATGTTAGGCTCCACCTGCCAGACAGTGTATGCCGGGTTCGATCCAACCGC 218 ************************************************************ consensus_5184#0 CAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACACAGCGTGC 359 consensus_5184#1 CAACAGTCTGCACGTGGGCAATCTTCTGGTGCTGATCGGGCTGTTGCACACGCAGCGTGC 278 *************************************************** ******** consensus_5184#0 TGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGG 419 consensus_5184#1 TGGCCACCAACCGATCGCACTGGTTGGCGGTGCTACCGGGCTGATCGGAGACCCTTCCGG 338 ************************************************************ consensus_5184#0 CCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCAT 479 consensus_5184#1 CCGCAAAACCGAGCGACAACAGCTCGAAACGGAAGCGGTAGAGCACAACGTGACCTGCAT 398 ************************************************************ consensus_5184#0 CAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAG 539 consensus_5184#1 CAGGCGGCAAATAGAGACGATTTTCGCGAACCACGAGCGCTTCTTCTGGGACCGACCTAG 458 ************************************************************ consensus_5184#0 TTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAGTACAGCTTCGT 599 consensus_5184#1 TTCGCTGAAACCGGTGCTGGTGGTGAACAATGCGGACTGGTACCGGCAATACAGCTTCGT 518 ************************************************ *********** consensus_5184#0 CGATTTCATGGCGAACGTCGGCCGCCACTTTCGG-ATGGGAGCGATGCTTTCGCGCTCCT 658 consensus_5184#1 CGATTTCATGGCGAACGTCGGCCGCCACTTTCGGGATGGGAGCGATGCTTTCGCGCTCCT 578 ********************************** ************************* consensus_5184#0 CCGTCCAGACCC-GTCTGACGAGCGAGTCCGG-CATGAGCTTTACCG-AGTTTTCCTACC 715 consensus_5184#1 CCGTCCAGACCCCGTCTGACGAGCGAGTCCGGGCATGAGCTTTACCGGAGTTTTCCTACC 638 ************ ******************* ************** ************ consensus_5184#0 AGCTG-TTCCAGGCGTAC-GATTGGT-TGCATC-TGTTGCGCC---ACACAATTGCCGGT 768 consensus_5184#1 AGCTGGTTCCAGGCGTTCCGATTGGTGTGCATCCTGTTGCGCCCAGGCACAATTGCCGGN 698 ***** ********** * ******* ****** ********* ************ consensus_5184#0 TTCAG-CTCGGC--GGCTCGGACCAGATGGG--CAACATC------ATGTCCGGCCAGG- 816 consensus_5184#1 TTCANGCTCGGGCGGGTTCNGACCANATGGGGCNAACATTCCAATGGTTCCGGGCCAGGG 758 **** ***** ** ** ***** ***** ***** * * ******* consensus_5184#0 AGCTGATCA---------GCCGCACAGACGGGAAGGAAGTGTTC--GGGCTGACACTG-C 864 consensus_5184#1 AACTGATCNAGGCCGGACNCNACACGGGGAAACGGAAAGTGGTCCGGGGCTAACACTGGC 818 * ****** * *** * * ***** ** ***** ****** * consensus_5184#0 CCCTCGTCACCAACGAGGAGGGCGACAAGTTCGGCAAGTCGGCGGGCAATGCGGTGTGGC 924 consensus_5184#1 CCTTCGTTACCAACNAGGAGGGCAACAANTTTCG------GGCAAGTG--NCGGCGNGCC 870 ** **** ****** ******** **** ** * *** * *** * * * consensus_5184#0 TGTCGGACGACCGCACCTCGCCGTATGCGCTGTACCACTACTTCGTCCGTACGCCCGACT 984 consensus_5184#1 AATCNGCGGTTGGCTCTTCGCNAGAC-CG------------------------------- 898 ** * * ** * **** * ** consensus_5184#0 CGGAGGTGGAGAAGCTGTTGCGACTGCTCACCTTTCTGCCGGTG 1028 consensus_5184#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||