cluster # 5189

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Anopheles gambiae
cluster # 5189 cluster # 5189 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5189#0 length = 654 sequences # 2

consensus_5189#1 length = 622 sequences # 1
consensus_5189#2 length = 522 sequences # 1

consensusID : consensus_5189#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 654
fasta sequence

                              [GAATCCGAGGTTAATGTAGCTGGCTATTTGTTGCGCTTGGAACTGTTCTCGATTGGCGCTTGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATCCTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACATTGTTCTGCTGG-CATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGCACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAG-TGGCGAACAGTTAACGACGACG-AGAAAATTCCTTGACCG-TGCTCCAATCGTTTGTTCCTGCTGACCGGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGCTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTCTGGTATAAACAAATACTAAAACAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAACTTGACACGATATTTTTCTCACTTGTGAACAAACACAAGACTATAGAGTATAGTGACTACATGAACACTGGCCTAT]

[+] EMBL AL695245             [GAATCCGAGGTTAATGTAGCTGGCTATTTGTTGCGCTTGGAACTGTTCTCGATTGGCGCTTGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATCCTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACATTGTTCTGCTGG CATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGCACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAG TGGCGAACAGTTAACGACGACG AGAAAATTCCTTGACCG TGCTCCAATCGTTTGTTCCTGCTGACCG                                                                                                                                                                                                                                                ]
[+] EMBL AL695063             [                                 cgaggttAACTGTTCTCGATTGGCGCTTGCTAAAACTATAGCAAAAATGCTTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATCCTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACATTGTTCTGCTGGCCATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGCACACAATCTGGCACATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGCTGGCGAACAGTTAACGACGACGCAGAAAATTCC TGACCGCAGCTCCAATCGTTTGTTCCTGCTGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGCTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTCTGGTATAAACAAATACTAAAACAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAACTTGACACGATATTTTTCTCACTTGTGAACAAACACAAGACTATAGAGTATAGTGACTACATGAACACTGGCCTAT]




>consensus_5189#0
GAATCCGAGGTTAATGTAGCTGGCTATTTGTTGCGCTTGGAACTGTTCTCGATTGGCGCT
TGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATC
CTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACAT
TGTTCTGCTGGCATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGCA
CACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATC
GATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTTA
ACGACGACGAGAAAATTCCTTGACCGTGCTCCAATCGTTTGTTCCTGCTGACCGGTCTTT
ACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGCTGGTACTC
GTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTCTGGTATAAACAAATACTAAAA
CAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAACTTGACACGATATTTTTCTCAC
TTGTGAACAAACACAAGACTATAGAGTATAGTGACTACATGAACACTGGCCTAT

consensusID : consensus_5189#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [GATTGGCGCTTGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATCCTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACATTGTTCTGCTGGCCATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGCACACAATCTGGCACATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTTAACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGCTGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTTGGTATAAACAAATACTAAAAAGGGTTGGTAAGTGAATTCATTTCATGGTCCTAAACGATTCCGTAATTGTAAAAATTCTGTACATGTTTCAAAACCATGAATTCTGGATGTNAGGTACAGAAACGGCAATCATCGGACTGTAAATTGAACGA]

[+] EMBL BX627030             [GATTGGCGCTTGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATCCTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACATTGTTCTGCTGGCCATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGCACACAATCTGGCACATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTTAACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGCTGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTTGGTATAAACAAATACTAAAAAGGGTTGGTAAGTGAATTCATTTCATGGTCCTAAACGATTCCGTAATTGTAAAAATTCTGTACATGTTTCAAAACCATGAATTCTGGATGTNAGGTACAGAAACGGCAATCATCGGACTGTAAATTGAACGA]




>consensus_5189#1
GATTGGCGCTTGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATC
CAAACGCATCCTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCA
TCTTCCACATTGTTCTGCTGGCCATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTA
CGAACATCGCACACAATCTGGCACATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCAT
GGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTG
GCGAACAGTTAACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGC
TGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCG
TCGTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTTGGTATAAACA
AATACTAAAAAGGGTTGGTAAGTGAATTCATTTCATGGTCCTAAACGATTCCGTAATTGT
AAAAATTCTGTACATGTTTCAAAACCATGAATTCTGGATGTNAGGTACAGAAACGGCAAT
CATCGGACTGTAAATTGAACGA

consensusID : consensus_5189#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TTACGAACATCGCACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTTAACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGCTGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTTGGTATAAACAAATACTAAAAAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAATTGAACGATATTTTTCTCATTGTGAACAAAAAAGACTATACAGTATAGTGACTACATGAAATGGATATCGAATACGAGTTTACTCGTTAAATTACGCATAACAAACATAATGTTGATGTAAACTGAATCTTTGTTTCTGAAACAACTCTCATGGGCTATGTTAAATGTGCTG]

[+] EMBL BX609698             [TTACGAACATCGCACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTTAACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGCTGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTTGGTATAAACAAATACTAAAAAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAATTGAACGATATTTTTCTCATTGTGAACAAAAAAGACTATACAGTATAGTGACTACATGAAATGGATATCGAATACGAGTTTACTCGTTAAATTACGCATAACAAACATAATGTTGATGTAAACTGAATCTTTGTTTCTGAAACAACTCTCATGGGCTATGTTAAATGTGCTG]




>consensus_5189#2
TTACGAACATCGCACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCC
CATGGATGAGCATCGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACA
GTGGCGAACAGTTAACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCC
TGCTGACGTGTCTTTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGC
TCGTCGTGGTACTCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTTGGTATAA
ACAAATACTAAAAAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAATTGAACGATA
TTTTTCTCATTGTGAACAAAAAAGACTATACAGTATAGTGACTACATGAAATGGATATCG
AATACGAGTTTACTCGTTAAATTACGCATAACAAACATAATGTTGATGTAAACTGAATCT
TTGTTTCTGAAACAACTCTCATGGGCTATGTTAAATGTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5189#0      GAATCCGAGGTTAATGTAGCTGGCTATTTGTTGCGCTTGGAACTGTTCTCGATTGGCGCT 60
consensus_5189#1      --------------------------------------------------GATTGGCGCT 10
consensus_5189#2      ------------------------------------------------------------
                                                                                  

consensus_5189#0      TGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATC 120
consensus_5189#1      TGCTAAAACCATAGCAAAAATGATTGCCGGTGGTAATGGCGATCCGAATCCAAACGCATC 70
consensus_5189#2      ------------------------------------------------------------
                                                                                  

consensus_5189#0      CTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACAT 180
consensus_5189#1      CTGGCTCGATTCCCGTGGTTTGTGGCTTGCATACGTGCTAGGCATCACCATCTTCCACAT 130
consensus_5189#2      ------------------------------------------------------------
                                                                                  

consensus_5189#0      TGTTCTGCTGGC-ATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGC 239
consensus_5189#1      TGTTCTGCTGGCCATACCGTTTGTGCAGATCCCGTACGCGTGGACAATTACGAACATCGC 190
consensus_5189#2      -----------------------------------------------TTACGAACATCGC 13
                                                                     *************

consensus_5189#0      ACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCAT 299
consensus_5189#1      ACACAATCTGGCACATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCAT 250
consensus_5189#2      ACACAATCTGGCCCATTTGTACTTCCTGCATTGCATAAAGGGCGCCCCATGGATGAGCAT 73
                      ************ ***********************************************

consensus_5189#0      CGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTT 359
consensus_5189#1      CGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTT 310
consensus_5189#2      CGATGCGGGTGAGAATCGCAAGTACACGCACTGGGAGCAGATCAACAGTGGCGAACAGTT 133
                      ************************************************************

consensus_5189#0      AACGACGACGAGAAAATTCCTTGACCGTGCTCCAATCGTTT-GTTCCTGCTGACCGGTCT 418
consensus_5189#1      AACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGCTGACGTGTCT 370
consensus_5189#2      AACGACGACGAGAAAATTCCTGACCGCTGCTCCAATCGTTTTGTTCCTGCTGACGTGTCT 193
                      *********************   *  ************** ************  ****

consensus_5189#0      TTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCGCTGGTAC 478
consensus_5189#1      TTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCG-TGGTAC 429
consensus_5189#2      TTACACGCGCAACGATATCGATCATTTTATTGTCAACTTTATTTCGCTCGTCG-TGGTAC 252
                      ***************************************************** ******

consensus_5189#0      TCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTTCTGGTATAAACAAATACTAA 538
consensus_5189#1      TCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTT-TGGTATAAACAAATACTAA 488
consensus_5189#2      TCGTACCGAAGTTGCCCCAATTCCATGGCGTACGCCTGTT-TGGTATAAACAAATACTAA 311
                      **************************************** *******************

consensus_5189#0      AACAGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAACTTGACACGATATTTTTCTC 598
consensus_5189#1      AA-AGGGTTGGTAAGTGAATTCATTTCAT--GGTCCTAAAC--GATTCCGTAATTGTAAA 543
consensus_5189#2      AA-AGGGTTGGTACAGAAACGGCAATCATCGGACTGTAAATTGAA--CGATATTTTTCTC 368
                      ** **********    **      ****  *    ****    *  *  ** ** *   

consensus_5189#0      ACTTGTGAACAAACA-CAAGACTATAGAGTATAGTGACTACATGAAC-ACTGGCCTAT-- 654
consensus_5189#1      AATTCTGTACATGTTTCAAAACCATGAATTCTGGATGTNAGGTACAG-AAACGGCAATCA 602
consensus_5189#2      A-TTGTGAACAAAA---AAGACTATACAGTATAGTGACTACATGAAATGGATATCGAATA 424
                      * ** ** ***      ** ** **  * * * *     *  *  *        * *   

consensus_5189#0      ------------------------------------------------------------
consensus_5189#1      TCGGACTGTAAATTGAACGA---------------------------------------- 622
consensus_5189#2      CGAGTTTACTCGTTAAATTACGCATAACAAACATAATGTTGATGTAAACTGAATCTTTGT 484
                                                                                  

consensus_5189#0      --------------------------------------
consensus_5189#1      --------------------------------------
consensus_5189#2      TTCTGAAACAACTCTCATGGGCTATGTTAAATGTGCTG 522