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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence
[GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAACAGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA]
[+] EMBL AL695144 [GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAACAGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA]
consensusID : consensus_5191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence
[ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGCGTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCCTTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGTGTACCGT]
[+] EMBL BX628092 [ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCAT ]
[+] EMBL BM602219 [ ccgACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCGCAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGACACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCACCAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTAATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAACAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGCGTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCCTTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGTGTACCGT]
consensusID : consensus_5191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATGGTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACAGGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCTACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC]
[+] EMBL AL932512 [AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATGGTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACAGGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCTACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5191#1 ------------------------------ACAACAAG-TCACCATTTAGCAGCGTTTTA 29
consensus_5191#2 AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTA 60
consensus_5191#0 ------------------------------------------------------------
consensus_5191#1 TCCTGTGATATTCGAGCGAATTACTTCTTT-CTCTCTCTCTGCGAGTCATATACAAAGTA 88
consensus_5191#2 TCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTA 120
consensus_5191#0 ------------------------GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTA 36
* * ***************** ***** ***
consensus_5191#1 TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAC--GTACGGTGTC--GGTTATG 144
consensus_5191#2 TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATG 180
consensus_5191#0 TACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGAC--GTACGGTGTC-GTGTTATG 93
**** ************************** ****** ******** ******
consensus_5191#1 GTACGGAATACCACCAGCAGCAGC--AACAG-TACTACTAT--CAACAACAGCAG--CAA 197
consensus_5191#2 GTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTAT--CAACAACAGCAGGCCAA 238
consensus_5191#0 GTACGGNATACCACCAGCAGCAGC--AACAG-TACTACTATACCAACAACAGCCAGCCAA 150
****** **************** ***** ********* ********** ***
consensus_5191#1 CAGGCACAACA--G-GCGC-AAAAACAA---CAGCAAATGA--TCGCC--GGTAT--CAT 244
consensus_5191#2 CAGGCGCAACAAAG-GCGCCAAAAACAAACCCAGCAAATGAATTCGCC--GGTATTCCAT 295
consensus_5191#0 --GGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCAT 208
*** ***** * ** ** *** * ** * ** *** ***** ***
consensus_5191#1 GGG----CTACT---ATCCCG---CGGAA------GCC-GCCGCA--ATGTTCTA-CAA- 283
consensus_5191#2 GGG----CTACCTTAATCCCG---CGGAA------GCCCGCCGCA--ATGTTCTA-CAA- 338
consensus_5191#0 TGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAA 268
* ** ***** ***** *** *** * * * *** ***
consensus_5191#1 --CCCA---TACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAG 338
consensus_5191#2 --CCCAATACCCCCCTACGGACAC------------------------------------ 360
consensus_5191#0 CACCCATT-AACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCA--AG 325
**** ***
consensus_5191#1 CAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTG--AACCAGC--- 393
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 ACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTT 385
consensus_5191#1 ----AGGCCG-AGCTGCTCCAAAA-GTCACTGATGAAGGGACACTCGAAGAAGTCCCCGG 447
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 TGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATAT 445
consensus_5191#1 CCG-AAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAG 506
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 ATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACA 505
consensus_5191#1 ACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGG-------ATGCGGCGGA 559
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 AGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGG 565
consensus_5191#1 GCGC-----CTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCG--G 612
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 GCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACG 625
consensus_5191#1 CCGGCTCTATTC-----ACGTCGATTTGACCAGCAACAACACCGGGTA--CTAGCGT--- 662
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 CCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAAC 685
consensus_5191#1 -GGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAA-GCGTAAAAGTGA---- 716
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 AGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAA 745
consensus_5191#1 --CTCCTTCCTCGAGATCGATCAGCAGA-----CCAACAAGCACAGCCG-----AACAAT 764
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 GCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAAC 805
consensus_5191#1 GCTCA--GCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGT--------CA 814
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 ACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANA 865
consensus_5191#1 GCTC--CTGCACCCACACTGATCAGCGTGTACCGT------------------------- 847
consensus_5191#2 ------------------------------------------------------------
consensus_5191#0 ACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGC 925
consensus_5191#1 ------------------------------------------------
consensus_5191#2 ------------------------------------------------
consensus_5191#0 NNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA 973
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||