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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1247 fasta sequence
[CCGCGCACCTTGTTTACAACGCTCCACAAATCGTAGTTGGCACCTTTCGTCGCAACATTTCCTGTTGCTGCGTGTTGTAAAATAAAAACGGTGAAAAACTCGACCCAAAAGACGGGCAACGGTGGTGAGAGCGAAAGGAAACACACACACACAGAGCGATGGAGGACTTTCAGAAGATTGAAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTGAGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCCACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGACGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCC-GAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCCGCGATGGTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGGGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCTGGTCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTTCAGGGTGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGTATACTGCGCACGCCGACGGATGACATCTGGCCGGGGGTGACCTCGCTGCCGGACTACAAATCATCCTTCCCTTGCTGGACGCAGAACAATCTCGCTAGTCAGGTGTCGAATCTGGATTCGGCCGGTATCGATCTGCTGCAGAAGTGCCTTATCTACGATCCGATGCTGCGCATCTCGGCGAAGAAGATCCTCGAGCACAAGTACTTCGATGGGTTCGAGCGGTGCAACATCCCGACGGAGTAATTTTAATTCCCCGTTTTCTTCTCCCCCTCTTGCGCTGTCAGGTGTTTTGCCATTCCTTTCCACTTCTTTTTTCTCTCTCTCTCTCCAAGGTGCGCTCGTGAATTACGTTACTGAATTTGCGCGCGAGTTTGTGCTTGTGTGTTTGTCCGCGTGTGCCGAATTATTAGGAATTATTACTGTACATTTTTACACA]
[+] EMBL BM598711 [CCGCGCACCTTGTTTACAACGCTCCACAAATCGTAGTTGGCACCTTTCGTCGCAACATTTCCTGTTGCTGCGTGTTGTAAAATAAAAACGGTGAAAAACTCGACCCAAAAGACGGGCAACGGTGGTGAGAGCGAAAGGAAACACACACACACAGAGCGATGGAGGACTTTCAGAAGATTGAAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTGAGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCCACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGACGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCC GAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCCGCGATGGTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGG ]
[+] EMBL BM616667 [ ccGGAGGACTTTCAGAAGATTGAAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTGAGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCGACTGCGATCAGAGAGATCTCCCTGCTGAAGGAACTGAAGCACCGGAACGTGGTATCGCTGAAGGATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCCGCGATGCTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCGATTTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCTGGTCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTTCAGGGTGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGTATACTGCGCACGCCGACGGATGACA ]
[-] EMBL BM604432 [ GGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCTGGTCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTCCAGGGCGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGCATACTGCGCACGCCGACGGATGACATCTGGCCGGGGGTGACCTCGCTGCCGGACTACAAATCATCCTTCCCTTGCTGGACGCAGAACAATCTCGCTAGTCAGGTGTCGAATCTGGATTCGGCCGGTATCGATCTGCTGCAGAAGTGCCTTATCTACGATCCGATGCTGCGCATCTCGGCGAAGAAGATCCTCGAGCACAAGTACTTCGATGGGTTCGAGCGGTGCAACATCCCGACGGAGTAATTTTAATTCCCCGTTTTCTTCTCCCCCTCTTGCGCTGTCAGGTGTTTTGCCATTCCTTTCCACTTCTTTTTTCTCTCTCTCTCTCCAAGGTGCGCTCGTGAATTACGTTACTGAATTTGCGCGCGAGTTTGTGCTTGTGTGTTTGTCCGCGTGTGCCGAATTATTAGGAATTATTACTGTACATTTTTACACA]
consensusID : consensus_5192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[CCCGAGGTTAAGGACGAGGGCATCCCATCGACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCGCGATGCTGTTCTGTCACCGTCGGCGCGTCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGGCCCGTGGACATCTGGGTCGATTGGGTGTATCTTTGCCGAGATGGTACCCGGAAGCCACTGTTCCAGGGGCGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGATACTGGGCA]
[+] EMBL AL695208 [CCCGAGGTTAAGGACGAGGGCATCCCATCGACTGCGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGGATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGAAGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCTACATGTATCAGATCACGGCGCGATGCTGTTCTGTCACCGTCGGCGCGTCTGCACCGCGATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTGGGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGTGGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGGCCCGTGGACATCTGGGTCGATTGGGTGTATCTTTGCCGAGATGGTACCCGGAAGCCACTGTTCCAGGGGCGATTCGGAGATCGATCAGCTGTTCCGGATGTTCCGATACTGGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5192#0 CCGCGCACCTTGTTTACAACGCTCCACAAATCGTAGTTGGCACCTTTCGTCGCAACATTT 60
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 CCTGTTGCTGCGTGTTGTAAAATAAAAACGGTGAAAAACTCGACCCAAAAGACGGGCAAC 120
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 GGTGGTGAGAGCGAAAGGAAACACACACACACAGAGCGATGGAGGACTTTCAGAAGATTG 180
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 AAAAGATTGGCGAGGGTACGTACGGTGTGGTGTACAAGGGACGCAACAAGCACACCGGTG 240
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 AGATCGTGGCCATGAAGAAGATCCGGCTGGAAACGGAGGACGAGGGCATCCCATCCACTG 300
consensus_5192#1 --------------------------CCCGAGGTTAAGGACGAGGGCATCCCATCGACTG 34
* ** ******************* ****
consensus_5192#0 CGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGG 360
consensus_5192#1 CGATCAGAGAGATATCCCTGCTGAAGGAGCTGAAGCACCGGAACGTGGTATCGCTGAAGG 94
************************************************************
consensus_5192#0 ACGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGA 420
consensus_5192#1 ATGTGCTGATGGAGGAGAACCGGCTCTATCTAATCTTTGAGTTCCTGTCGATGGATCTGA 154
* **********************************************************
consensus_5192#0 AGAAGTACATGGACAGCCTGCCGCCG-AGAAGATGATCGATGCGGATCTGGTCAAGAGCT 479
consensus_5192#1 AGAAGTACATGGACAGCCTGCCGCCGGAGAAGATGATCGATGCGGATCTGGTCAAGAGCT 214
************************** *********************************
consensus_5192#0 ACATGTATCAGATCACGGCCGCGATGGTGTTCTGTCACCGTCGGCGCGTCCTGCACCGCG 539
consensus_5192#1 ACATGTATCAGATCACGGC-GCGATGCTGTTCTGTCACCGTCGGCGCGTC-TGCACCGCG 272
******************* ****** *********************** *********
consensus_5192#0 ATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTG 599
consensus_5192#1 ATCTGAAGCCCCAGAATCTGCTCATCAACAAGGAGGGCGTGATCAAGGTGGCCGACTTTG 332
************************************************************
consensus_5192#0 GGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGT 659
consensus_5192#1 GGTTGGGCCGATCGTTCGGCATCCCGGTGCGCAACTACACACACGAGATCGTGACGCTGT 392
************************************************************
consensus_5192#0 GGTACCGGGGGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGCCCCGTGGACATCT 719
consensus_5192#1 GGTACCGGGCGCCGGAAGTGCTGCTGGGGTCGCTGCGCTACTCCTGGCCCGTGGACATCT 452
********* ************************************ *************
consensus_5192#0 GG-TCGATTGGGTGTATCTTTGCCGAGATGGCCACCCGGAAGCCACTGTTTCAGGG-TGA 777
consensus_5192#1 GGGTCGATTGGGTGTATCTTTGCCGAGATGGT-ACCCGGAAGCCACTGTTCCAGGGGCGA 511
** **************************** ***************** ***** **
consensus_5192#0 TTCGGAGATCGATCAGCTGTTCCGGATGTTCCGTATACTGCGCACGCCGACGGATGACAT 837
consensus_5192#1 TTCGGAGATCGATCAGCTGTTCCGGATGTTCCG-ATACTGGGCA---------------- 554
********************************* ****** ***
consensus_5192#0 CTGGCCGGGGGTGACCTCGCTGCCGGACTACAAATCATCCTTCCCTTGCTGGACGCAGAA 897
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 CAATCTCGCTAGTCAGGTGTCGAATCTGGATTCGGCCGGTATCGATCTGCTGCAGAAGTG 957
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 CCTTATCTACGATCCGATGCTGCGCATCTCGGCGAAGAAGATCCTCGAGCACAAGTACTT 1017
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 CGATGGGTTCGAGCGGTGCAACATCCCGACGGAGTAATTTTAATTCCCCGTTTTCTTCTC 1077
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 CCCCTCTTGCGCTGTCAGGTGTTTTGCCATTCCTTTCCACTTCTTTTTTCTCTCTCTCTC 1137
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 TCCAAGGTGCGCTCGTGAATTACGTTACTGAATTTGCGCGCGAGTTTGTGCTTGTGTGTT 1197
consensus_5192#1 ------------------------------------------------------------
consensus_5192#0 TGTCCGCGTGTGCCGAATTATTAGGAATTATTACTGTACATTTTTACACA 1247
consensus_5192#1 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||