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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1031 fasta sequence
[TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAGTTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTGATAGGAGCAAA]
[+] EMBL BX605197 [TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCG ]
[+] EMBL BX609312 [ GTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAGTTGTATTATACACTTTATTCATGACATAAGC ]
[+] EMBL BM639285 [ ccgCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCATATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAATTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTGATAGGAGCAAA]
consensusID : consensus_5196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCTTATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACNTACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT]
[+] EMBL AL695305 [CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCTTATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACNTACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5196#0 TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTC 60
consensus_5196#1 ------------------------------------------------------------
consensus_5196#0 GAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACC 120
consensus_5196#1 ------------------------------------------------------------
consensus_5196#0 ACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGG 180
consensus_5196#1 ------------------------------CCGAGGTTTA--GAGGTGGACTGGTTCCGG 28
*** * ******************
consensus_5196#0 TGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT 240
consensus_5196#1 TGGGTGCCGGTCGCCAGCATGTC-GCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT 87
*********************** ************************************
consensus_5196#0 GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC 300
consensus_5196#1 GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC 147
************************************************************
consensus_5196#0 TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG 360
consensus_5196#1 TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG 207
************************************************************
consensus_5196#0 GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTG-CTGCTGCG-TCGCGT 418
consensus_5196#1 GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGT 267
******************************************** ******** ******
consensus_5196#0 CCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCT 478
consensus_5196#1 CCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCT 327
************************************************************
consensus_5196#0 CCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCT 538
consensus_5196#1 CCGAATCTCTGAATGGTGGCAAGAAGTCCGGC-ACAAGGATGTCGCTCCGACGGCCGTCT 386
******************************** ***************************
consensus_5196#0 GACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTT 598
consensus_5196#1 GACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATN 446
********************************************************* *
consensus_5196#0 AAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAA-TTACCTCCCACAGCAT-C 656
consensus_5196#1 AAACGCGTACGTCACCGCT-CATGTCATATATCCTTATTAACTTACCTCCCACAGCATAC 505
******** ** ** * * * *************** **************** *
consensus_5196#0 TTG-AGTTGTATTATACACTTTA-TTCATGACATAA-GCATACCTTCTGTCGTTTATATG 713
consensus_5196#1 TTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTC 565
*** * ***************** * ********** ******* * * * * *
consensus_5196#0 TATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAA 773
consensus_5196#1 TACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAA-GGC 624
** ** * * ** ** * * *** ** * *** ***
consensus_5196#0 CACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTG 833
consensus_5196#1 CATACA-ACAACCCGANC--AACAGGAAACAAAACCA-----------CNTACGCTGCAT 670
** * ** * ** * * ***** ***** * * * *
consensus_5196#0 CCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCAT 893
consensus_5196#1 TCGGAACGTACCCAGAGTCAA-CANGGGAAAGGTNGCNAACT------------------ 711
*** * ** **** * * * * ***
consensus_5196#0 ATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAA 953
consensus_5196#1 ------------------------------------------------------------
consensus_5196#0 GCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAAT 1013
consensus_5196#1 ------------------------------------------------------------
consensus_5196#0 TTCGTTGATAGGAGCAAA 1031
consensus_5196#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||