These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence [CCGCCCACGCGTCCGCATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAACCAAACACCCCGATGGTCGAACAACGGTGCGACAGTTGAACCCGGTTCAAACGAGCCAGCAACACCATGCCGACCCGTTTTAAGCTGCGACCATGTGTGTCTTCAGAGCAACGTTGCACAAACGCCAGCCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTGCGTGTCCCAACCCGACTGTTGCCCGTCAATAAACACCCGGCAACGTTGCAGCCCAAACCAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTGCCTTCCTGCTACTTTTATTCGCCGTTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGGCCGCTACGTGCCAACGATTGTATACTTTCACGGCAATGCCGGCAACATGGGGCACCGGTTGCAGAACGCCACCGGCTTCTATCACACGCTTCAGTGCAACGTGCTGATGGTGGAGTACCGCGGGTACGGCCTGTCGACGGGCACGCCAAGCGAGAAAGGCTTCTTTGCCGATGCCCGCTCCGTGCTGGACCATCTATTCAGCCGGCACGATCTGGACCATGGGCAGATCGTGGTGTTTGGCCG] [+] EMBL BM605497 [CCGCCCACGCGTCCGCATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAACCAAACACCCCGATGGTCGAACAACGGTGCGACAGTTGAACCCGGTTCAAACGAGCCAGCAACACCATGCCGACCCGTTTTAAGCTGCGACCATGTGTGTCTTCAGAGCAACGTTGCACAAACGCCAGCCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTGCGTGTCCCAACCCGACTGTTGCCCGTCAATAAACACCCGGCAACGTTGCAGCCCAAACCAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTGCCTTCCTGCTACTTTTATTCGCCGTTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGG ] [+] EMBL BM639068 [ ccgCACCCGGCAACGTTGCAGCCCAAACCAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTGCCTTCCTGCTACTTTTATTCGCCGTTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGGCCGCTACGTGCCAACGATTGTATACTTTCACGGCAATGCCGGCAACATGGGGCACCGGTTGCAGAACGCCACCGGCTTCTATCACACGCTTCAGTGCAACGTGCTGATGGTGGAGTACCGCGGGTACGGCCTGTCGACGGGCACGCCAAGCGAGAAAGGCTTCTTTGCCGATGCCCGCTCCGTGCTGGACCATCTATTCAGCCGGCACGATCTGGACCATGGGCAGATCGTGGTGTTTGGCCG] consensusID : consensus_5198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence [CCTCAAGGCAGAATNCCCGCGGTTATANGCCACACACTCCGTAACCCGGTAGAACTGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTANATTCTTATCGTCCATATTCCTGCACAAAGCCAAACACTCCGATGGCGAACAACGGTGCGACAGTTGAACCCGATTACAAACGTGCCCTGCAAGACCATGCCGACCGGTTTATAAGCTGCGACCATGTGTGTCTATCAGCGCTACGTTGCGACAAAGGCCAACCGAAACGACATCGGNCATCGTCACAATNGTTGCTCAACGANACGNGTATTGGGGGCCACAANGCGTTAGCCTTGGTTAAAACAGCAGCATTTAAGAATGAGTGACCACCCGGTAACACTTGACNTGCAGACGANGTTGGTTGGTNACCCCCAAAAGCCCCNGAACTNGGTATGGCCCCCGGTACCAAAATAAAGATTAAACCCCCCGTGAGCACAANAGATATTACGCATGGCCCCACACAAAAAGCAGNGCACGNCCTGACACAATCGTGGGAAAAAAANCCTGTATACCACTCCNCAAAACACAAAATTATGGTTACCNNANTANNATNCCGCCNGCANGGCAAACCTTTAGGGGCGCAAGANCGGACTATATGGTACGGCAGTAGTGGTTTCGTCCTTCTGNGANCCCTAGGAGGCAAACTNTACAGGAANCGNAATANACGAGCAGAATAACAAAGNGNANGCAAACTGCGACACCNAGGATTAGGTGTNAACG] [+] EMBL AL695327 [CCTCAAGGCAGAATNCCCGCGGTTATANGCCACACACTCCGTAACCCGGTAGAACTGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTANATTCTTATCGTCCATATTCCTGCACAAAGCCAAACACTCCGATGGCGAACAACGGTGCGACAGTTGAACCCGATTACAAACGTGCCCTGCAAGACCATGCCGACCGGTTTATAAGCTGCGACCATGTGTGTCTATCAGCGCTACGTTGCGACAAAGGCCAACCGAAACGACATCGGNCATCGTCACAATNGTTGCTCAACGANACGNGTATTGGGGGCCACAANGCGTTAGCCTTGGTTAAAACAGCAGCATTTAAGAATGAGTGACCACCCGGTAACACTTGACNTGCAGACGANGTTGGTTGGTNACCCCCAAAAGCCCCNGAACTNGGTATGGCCCCCGGTACCAAAATAAAGATTAAACCCCCCGTGAGCACAANAGATATTACGCATGGCCCCACACAAAAAGCAGNGCACGNCCTGACACAATCGTGGGAAAAAAANCCTGTATACCACTCCNCAAAACACAAAATTATGGTTACCNNANTANNATNCCGCCNGCANGGCAAACCTTTAGGGGCGCAAGANCGGACTATATGGTACGGCAGTAGTGGTTTCGTCCTTCTGNGANCCCTAGGAGGCAAACTNTACAGGAANCGNAATANACGAGCAGAATAACAAAGNGNANGCAAACTGCGACACCNAGGATTAGGTGTNAACG] consensusID : consensus_5198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGGTAGAACGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAGCCAAACACTCCGATGGCCGAACAACGGTGCGACAGTTGAACCCGATTCAAACGTGCCCGCAACACCATGCCGACCGGTTTTAAGCTGCGACCATGTGTGTCTTCAGCGCTACGTTGCACAAACGCCAACCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTCCCAACCCGACTGTTGCCCGTCAATAAATACCCGGCAACGTTGCAGCCCAAAACAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGGATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTTGCCTTCCTGCTGCTTTTATTCGCCATTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAA] [+] EMBL BM575621 [CCGGTAGAACGGCAACATTTTTACTTTCCCATCGATTTGCGTGTCGTTTTCTTTCGTCCATTTCCGCACAAAGCCAAACACTCCGATGGCCGAACAACGGTGCGACAGTTGAACCCGATTCAAACGTGCCCGCAACACCATGCCGACCGGTTTTAAGCTGCGACCATGTGTGTCTTCAGCGCTACGTTGCACAAACGCCAACCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTGGCAAAGCGTGCTGTTAACGAGCTTTTTGTCCACCGTTCCTGAGGAGAGAGTGTGTCCCAACCCGACTGTTGCCCGTCAATAAATACCCGGCAACGTTGCAGCCCAAAACAGAGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGAAGATTGTGCGGGTGCTGGCCGGAATAGCGATGCGGATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCCTGATCTACGTGGTGTATGGGGGCTTTTTTTGCCTTCCTGCTGCTTTTATTCGCCATTTCTGGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCGCGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACGAAACGCTGCACCTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5198#0 ---------------------------------------------CCGCCCACGC-GTCC 14 consensus_5198#2 ---------------------------------------------CCGGTAGAAC-GGCA 14 consensus_5198#1 CCTCAAGGCAGAATNCCCGCGGTTATANGCCACACACTCCGTAACCCGGTAGAACTGGCA 60 *** * * * consensus_5198#0 GCATTTTTACTTTCCCATCGATTTGCGTGTCGT---TTTCTTTCGTCCAT--TTCCGCAC 69 consensus_5198#2 ACATTTTTACTTTCCCATCGATTTGCGTGTCGT---TTTCTTTCGTCCAT--TTCCGCAC 69 consensus_5198#1 ACATTTTTACTTTCCCATCGATTTGCGTGTCGTANATTCTTATCGTCCATATTCCTGCAC 120 ******************************** ** * ******** * * **** consensus_5198#0 AAAACCAAACACCCCGATGGTCGAACAACGGTGCGACAGTTGAACCCGGTT-CAAACGAG 128 consensus_5198#2 AAAGCCAAACACTCCGATGGCCGAACAACGGTGCGACAGTTGAACCCGATT-CAAACGTG 128 consensus_5198#1 AAAGCCAAACACTCCGATGG-CGAACAACGGTGCGACAGTTGAACCCGATTACAAACGTG 179 *** ******** ******* *************************** ** ****** * consensus_5198#0 CCA-GCAACACCATGCCGACCCGTTT-TAAGCTGCGACCATGTGTGTCT-TCAGAGCAAC 185 consensus_5198#2 CCC-GCAACACCATGCCGACCGGTTT-TAAGCTGCGACCATGTGTGTCT-TCAGCGCTAC 185 consensus_5198#1 CCCTGCAAGACCATGCCGACCGGTTTATAAGCTGCGACCATGTGTGTCTATCAGCGCTAC 239 ** **** ************ **** ********************** **** ** ** consensus_5198#0 GTTGC-ACAAACGCCAGCCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTG 244 consensus_5198#2 GTTGC-ACAAACGCCAACCCGAAACGAATCGTTATCGTAAAATGTTGCTAAGAAAGGTTG 244 consensus_5198#1 GTTGCGACAAAGGCCAACC-GAAACGA-----CATCGGNCATCGTCACAATNGTTGCTCA 293 ***** ***** **** ** ******* **** * ** * * * * consensus_5198#0 GCAAAGCGTGCTGTTAACGAGCTT--TTTGTCCACCGTTCCTGAGGAGAGAGTGTGTGCG 302 consensus_5198#2 GCAAAGCGTGCTGTTAACGAGCTT--TTTGTCCACCGTTCCTGAGGAGAGAGTGTGT--- 299 consensus_5198#1 ACGANACGNG-TATTGGGGGCCACAANGCGTTAGCCTTGGTTAAAACAGCAGCATTT--- 349 * * ** * * ** * * ** ** * * * ** * * consensus_5198#0 TGTCCCAACCCGACTGTTGCCCGTCAATAAACACCCGGCA-ACGTTGCAGCCCAAACCAG 361 consensus_5198#2 ---CCCAACCCGACTGTTGCCCGTCAATAAATACCCGGCA-ACGTTGCAGCCCAAAACAG 355 consensus_5198#1 ----AAGAATGAGTGACCACCCGGTAACACTTGACNTGCAGACGANGTTGGTTGG-TNAC 404 * **** ** * * *** *** * * * consensus_5198#0 AGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGA---AGATTGTGCGGGTGC 418 consensus_5198#2 AGCGAAAGGAAACCGTCCCCAAAATGTCATTCCGCGACTGGA---AGATTGTGCGGGTGC 412 consensus_5198#1 CCCCAAAAGCCCCNGAACTNGGTATGGCCCCCGGTACCAAAATAAAGATTAAACCCCCCG 464 * *** * * * * *** * * * * * ***** * consensus_5198#0 TGGCCGGAATAGCGATGCGAATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCC 478 consensus_5198#2 TGGCCGGAATAGCGATGCGGATATGGGCCGCCAGTGGAGCTGCCCTGCTGTCCGCCTTCC 472 consensus_5198#1 TGAGCACAANAGATAT-TACGCATGGCCCCACACAAAAAGCAGNGCACGNCCTGACACAA 523 ** * ** ** ** **** ** ** * * * * * consensus_5198#0 TGATCTACGTGGTGTATGGGGGCTTTTTT-GCCTTCCTGCTACTTTTATTCGCCGTTTCT 537 consensus_5198#2 TGATCTACGTGGTGTATGGGGGCTTTTTTTGCCTTCCTGCTGCTTTTATTCGCCATTTCT 532 consensus_5198#1 T------CGTGGGAAAAAAANCCTGTATACCACTCCNCAAAACACAAAATTATGGTTACC 577 * ***** * ** * * ** * * * * ** * consensus_5198#0 GGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCG 597 consensus_5198#2 GGCATTCTGTACCACGCGCAGGACAACCTGCTGTACCATCCGGAGCTGCCGGCCAACTCG 592 consensus_5198#1 NNANTANNATNCCGCCNGCANGGCAAAC--CTTTAGGGGCGCAAG--ANCGGACTATATG 633 * * ** * *** * *** * ** ** * ** *** * * * consensus_5198#0 CGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACG-AAACGCTGCACCTGA- 655 consensus_5198#2 CGCATCTTCATACCCGTTCCCTCCATGCACGGGCTGCCTTACG-AAACGCTGCACCTGA- 650 consensus_5198#1 -GTACGGCAGTAGTGGTTTCGTCCTTCTGNGANCCCTAGGAGGCAAACTNTACAGGAANC 692 * * ** *** * *** * * * * * **** * ** consensus_5198#0 -AAACGCGCGATGCCGTCTCACTGCACGCGTTCTGGATCCGGCACCCAGGCGACAAGGGC 714 consensus_5198#2 -AA--------------------------------------------------------- 652 consensus_5198#1 GNAATANACGA-GCAGAATAACAAAGNGNANGCAAACTGCGACACCNAGGATTAGGTGTN 751 * consensus_5198#0 CGCTACGTGCCAACGATTGTATACTTTCACGGCAATGCCGGCAACATGGGGCACCGGTTG 774 consensus_5198#2 ------------------------------------------------------------ consensus_5198#1 AACG-------------------------------------------------------- 755 consensus_5198#0 CAGAACGCCACCGGCTTCTATCACACGCTTCAGTGCAACGTGCTGATGGTGGAGTACCGC 834 consensus_5198#2 ------------------------------------------------------------ consensus_5198#1 ------------------------------------------------------------ consensus_5198#0 GGGTACGGCCTGTCGACGGGCACGCCAAGCGAGAAAGGCTTCTTTGCCGATGCCCGCTCC 894 consensus_5198#2 ------------------------------------------------------------ consensus_5198#1 ------------------------------------------------------------ consensus_5198#0 GTGCTGGACCATCTATTCAGCCGGCACGATCTGGACCATGGGCAGATCGTGGTGTTTGGC 954 consensus_5198#2 ------------------------------------------------------------ consensus_5198#1 ------------------------------------------------------------ consensus_5198#0 CG 956 consensus_5198#2 -- consensus_5198#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||