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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1608 fasta sequence
[CGAGGTTAACATTCGCTGCAGCCAAACCGCGGGACAGCACAGACACAGGTGGCGGAGTTCCGCCACGATGCTATTTATTAGTGTGTAGAAGTTAAGGGCTTCCGGTGCGCGTTAGCTCGCTCCGGGTTAAAAACTATGTGTTCTTCGTTATCGTACGCTACGTTTTGATGCTGATTATGTGATTTTGTTGCTTGCGTATCTGGTTTCCTTTTTGCCGCATCTGCCCCGCGCAAGCATTGGCGGGCAGTGCTATTTTTTCGGGAAATGCAATACTGTAATCAACTTTACTATTTTATTCACCTCGTCGTAAGACACACACACACACACACCGTAATGATGTCGTAACAATTTTCTAACGCTCTTTCTATATGAGATACGAAGAAAACACGACGGGATTCCGGAGGAAGTCAGTCGACGTTTCGGTGTCCCGTTGAAGTGGTAAATAATAATACTCAGCTTTTTTTTCTTTATATAACAGAGTCATCTATTTGATGTAAGAACGTTGTATGTGTGTGCTTTCTCACCANCAGGGCTCACAGCTCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGNCTCGGTTAGTAATGCCATCTCTCAGACCGTTGGAAGGTTAAGTCAGTGGGGCACACTTCACACTTTACACAGCAAGCAAAATGCAACATACGAGTTAATCCTTACCAAAGGCACGGGCCCGTGGATTGCCGGTGGTGCTTGATGTAATCGTAACGTGTTGCCATGAGTGTCGCCTATAAGAGAATCGAGATTTTGGTCGAGAATCATCCTCCATTCTGCTTCGAATTACGCTAGTCACCCGAATGAACACCCCCCACACGAAGCCAAACCGAGCGCGTACGTGTTTGTTGGAGCGCTATAACGTAACGTGTTCATTTTATTATTGTACGTTATTTTGATTTCTCTCCGTACTTCCGTGTAGTTCCTTTTTGGTCTGTTGAGTATGTATCGACTGTGCTTTGGTTTCTACCATTGTGAGCAATATATTAGTAGTTTACTGTATACAAACGATGGAATATAGTTTTGACACGTACATACTGATTAATGGAAGCTATGTATAATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCATGATCCAAAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTACATTACATATTATTATTATTATTTCCCGATGACACTACACGCCACCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCGAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAATCAGATTTATATACGCTTCGGAAACCCGTTTCGCACCCGCTGGTGTAATGATAATTCTCTACAACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTCATGGAAGTGCGATGGAAGTCGCAAACGGGGGAAACGGAACAAACGTAACGCAAAGAAAAGTAAAAGAGTTAGTGTGTTGGAAGGTATTATGGTTGGCCTCCAGACGCCAGTGAAGCGCATGTATAGAC]
[+] EMBL AL695335 [CGAGGTTAACATTCGCTGCAGCCAAACCGCGGGACAGCACAGACACAGGTGGCGGAGTTCCGCCACGATGCTATTTATTAGTGTGTAGAAGTTAAGGGCTTCCGGTGCGCGTTAGCTCGCTCCGGGTTAAAAACTATGTGTTCTTCGTTATCGTACGCTACGTTTTGATGCTGATTATGTGATTTTGTTGCTTGCGTATCTGGTTTCCTTTTTGCCGCATCTGCCCCGCGCAAGCATTGGCGGGCAGTGCTATTTTTTCGGGAAATGCAATACTGTAATCAACTTTACTATTTTATTCACCTCGTCGTAAGACACACACACACACACACCGTAATGATGTCGTAACAATTTTCTAACGCTCTTTCTATATGAGATACGAAGAAAACACGACGGGATTCCGGAGGAAGTCAGTCGACGTTTCGGTGTCCCGTTGAAGTGGTAAATAATAATACTCAGCTTTTTTTTCTTTATATAACAGAGTCATCTATTTGATGTAAGAACGTTGTATGTGTGTGCTTTCTCACCANCAGGGCTCACAGCTCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGNCTCGGTTAGTAATGCCATC ]
[+] EMBL BM621105 [ ccgctaGTGTGCTTTCTCACCACCAGG CACAGCTCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGCCTCGGTTAGTAATGCCATCTCTCAGACCGTTGGAAGGTTAAGTCAGTGGGGCACACTTCACACTTTACACAGCAAGCAAAATGCAACATACGAGTTAATCCTTACCAAAGGCACGGGCCCGTGGATTGCCGGTGGTGCTTGATGTAATCGTAACGTGTTGCCATGAGTGTCGCCTATAAGAGAATCGAGATTTTGGTCGAGAATCATCCTCCATTCTGCTTCGAATTACGCTAGTCACCCGAATGAACACCCCCCACACGAAGCCAAACCGAGCGCGTACGTGTTTGTTGGAGCGCTATAACGTAACGTGTTCATTTTATTATTGTACGTTATTTTGATTTCTCTCCGTACTTCCGTGTAGTTCCTTTTTGGTCTGTTGAGTATGTATCGACTGTGCTTTGGTTTCTACCATTGTGAGCAATATATTAGTAGTTTACTGTATACAAACGATGGAATATAGTTTTGACACGTACATACTGATTAATGGAAGCTATGTATAATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCA ]
[+] EMBL BM638691 [ ccgCGTACATACTGATTAATGGAAGCTATGTATAATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCATGATCCAAAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTACATTACATATTATTATTATTATTTCCCGATGACACTACACGCCACCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCGAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAATCAGATTTATATACGCTTCGGAAACCCGTTTCGCACCCGCTGGTGTAATGATAATTCTCTACAACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTCATGGAAGTGCGATGGAAGTCGCAAACGGGGGAAACGGAACAAACGTAACGCAAAGAAAAGTAAAAGAGTTAGTGTGTTGGAAGGTATTATGGTTGGCCTCCAGACGCCAGTGAAGCGCATGTATAGAC]
consensusID : consensus_5199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[TGGGGGCGAGAAGCATGATCCAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTATATTACATATTATTATTATTATTAATTCCCGATGGCACTACACGCCATCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCAAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAAACAGATTTATATACGCTTCGGAACCCCGTTTCGCACCCGCTGGTGTAATGATAATGCTCTACAACTACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTGATGGAAGTCGCAAACGGGGGAAACCGAACAAGCGTAACGTGAAGAAAAGTAAAACAGTTAGTGTGTTGGAAGGTATGGTATG]
[+] EMBL BX627251 [TGGGGGCGAGAAGCATGATCCAAAAAAAAAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTATATTACATATTATTATTATTATTAATTCCCGATGGCACTACACGCCATCAGCGAAGGAGAAGGAAATATAATCAATAGTTATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCAAGAGTTGTGCAAAATGCCATATAGTTTTGAATTAATTATTTTTAAACAGATTTATATACGCTTCGGAACCCCGTTTCGCACCCGCTGGTGTAATGATAATGCTCTACAACTACTACTACTACTACTCTCTGAAGCATAGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTGATGGAAGTCGCAAACGGGGGAAACCGAACAAGCGTAACGTGAAGAAAAGTAAAACAGTTAGTGTGTTGGAAGGTATGGTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5199#0 CGAGGTTAACATTCGCTGCAGCCAAACCGCGGGACAGCACAGACACAGGTGGCGGAGTTC 60
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CGCCACGATGCTATTTATTAGTGTGTAGAAGTTAAGGGCTTCCGGTGCGCGTTAGCTCGC 120
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 TCCGGGTTAAAAACTATGTGTTCTTCGTTATCGTACGCTACGTTTTGATGCTGATTATGT 180
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 GATTTTGTTGCTTGCGTATCTGGTTTCCTTTTTGCCGCATCTGCCCCGCGCAAGCATTGG 240
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CGGGCAGTGCTATTTTTTCGGGAAATGCAATACTGTAATCAACTTTACTATTTTATTCAC 300
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CTCGTCGTAAGACACACACACACACACACCGTAATGATGTCGTAACAATTTTCTAACGCT 360
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CTTTCTATATGAGATACGAAGAAAACACGACGGGATTCCGGAGGAAGTCAGTCGACGTTT 420
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CGGTGTCCCGTTGAAGTGGTAAATAATAATACTCAGCTTTTTTTTCTTTATATAACAGAG 480
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 TCATCTATTTGATGTAAGAACGTTGTATGTGTGTGCTTTCTCACCANCAGGGCTCACAGC 540
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 TCTCGTGCAATAACACAGTGGCGCGCACATTCCAATACTGGNCTCGGTTAGTAATGCCAT 600
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CTCTCAGACCGTTGGAAGGTTAAGTCAGTGGGGCACACTTCACACTTTACACAGCAAGCA 660
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 AAATGCAACATACGAGTTAATCCTTACCAAAGGCACGGGCCCGTGGATTGCCGGTGGTGC 720
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 TTGATGTAATCGTAACGTGTTGCCATGAGTGTCGCCTATAAGAGAATCGAGATTTTGGTC 780
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 GAGAATCATCCTCCATTCTGCTTCGAATTACGCTAGTCACCCGAATGAACACCCCCCACA 840
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 CGAAGCCAAACCGAGCGCGTACGTGTTTGTTGGAGCGCTATAACGTAACGTGTTCATTTT 900
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 ATTATTGTACGTTATTTTGATTTCTCTCCGTACTTCCGTGTAGTTCCTTTTTGGTCTGTT 960
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 GAGTATGTATCGACTGTGCTTTGGTTTCTACCATTGTGAGCAATATATTAGTAGTTTACT 1020
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 GTATACAAACGATGGAATATAGTTTTGACACGTACATACTGATTAATGGAAGCTATGTAT 1080
consensus_5199#1 ------------------------------------------------------------
consensus_5199#0 AATTTGAATGCTAGTGTGCTTAGTGATGTATGGGGGCGAGAAGCATGATCCAAAAAAAAA 1140
consensus_5199#1 ------------------------------TGGGGGCGAGAAGCATGATCCAAAAAAAAA 30
******************************
consensus_5199#0 AAGAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTACATTACATATTATTATTAT 1200
consensus_5199#1 --GAGGTGTTCATAGTTGTCACGGCCACACTCCGCGCCGTATATTACATATTATTATTAT 88
*************************************** ******************
consensus_5199#0 TATT---TCCCGATGACACTACACGCCACCAGCGAAGGAGAAGGAAATATAATCAATAGT 1257
consensus_5199#1 TATTAATTCCCGATGGCACTACACGCCATCAGCGAAGGAGAAGGAAATATAATCAATAGT 148
**** ******** ************ *******************************
consensus_5199#0 TATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCGAGAGTTGTGCAAAATGC 1317
consensus_5199#1 TATAACTCAATATACACTCAACGGTCACGCGCTCCGCGCCGCAAGAGTTGTGCAAAATGC 208
****************************************** *****************
consensus_5199#0 CATATAGTTTTGAATTAATTATTTTTAATCAGATTTATATACGCTTCGGAAACCCGTTTC 1377
consensus_5199#1 CATATAGTTTTGAATTAATTATTTTTAAACAGATTTATATACGCTTCGGAACCCCGTTTC 268
**************************** ********************** ********
consensus_5199#0 GCACCCGCTGGTGTAATGATAATTCTCTACAACTACTACTACTACT---CTCTGAAGCAT 1434
consensus_5199#1 GCACCCGCTGGTGTAATGATAATGCTCTACAACTACTACTACTACTACTCTCTGAAGCAT 328
*********************** ********************** ***********
consensus_5199#0 AGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTTCATGGAAGTGCGATG 1494
consensus_5199#1 AGAACCAAACGAAATGATTATCAAACATAAGAAGCGCTCTAAGTT-----------GATG 377
********************************************* ****
consensus_5199#0 GAAGTCGCAAACGGGGGAAACGGAACAAACGTAACGCAAAGAAAAGTAAAAGAGTTAGTG 1554
consensus_5199#1 GAAGTCGCAAACGGGGGAAACCGAACAAGCGTAACGTGAAGAAAAGTAAAACAGTTAGTG 437
********************* ****** ******* ************* ********
consensus_5199#0 TGTTGGAAGGTATTATGGTTGGCCTCCAGACGCCAGTGAAGCGCATGTATAGAC 1608
consensus_5199#1 TGTTGGAAGGTATGGTATG----------------------------------- 456
************* *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||