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Anopheles gambiae
cluster # 5205 cluster # 5205       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5205#0 length = 1446 sequences # 3  
consensus_5205#1 length = 666 sequences # 1  

consensusID : consensus_5205#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1446
fasta sequence
                              [CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAGGTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATGGCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACGAACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAGGAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAACCCTCC]

[+] EMBL BM641634             [CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAGGTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATGGCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACGAACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAGGAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX627094             [                                                                                                                                                                                                                                               GAACAACGCTGAAAAGCTACATTGGAAGAGCTGCACACCGTGAGAAAGAGATAACAGCGAGGAATAAACTGTGCATAAAGTGTGAGGTAGACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AL695438             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccccggnttAATGGCAAAAGAGGATGATAGCGGAAGC AAAAANAANATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAACCCTCC]


>consensus_5205#0 CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGA GTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAG GTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATG GCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACG AACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAG GAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAA AAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACA AAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAA AGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATT CTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAA CATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAAC AAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAAT ACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGA GGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGT GTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATG ACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATT AGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTG CCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAA TCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTAC TATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGT GATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACAC ACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAA CGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCC ACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAA CCCTCC



consensusID : consensus_5205#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence
                              [CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAGCGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGCGCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGCTACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCCAAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAA]

[+] EMBL BM578240             [CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAGCGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGCGCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGCTACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCCAAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAA]


>consensus_5205#1 CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGT AAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAG CGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGC GCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATA TAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGC TACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCA TCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAAC CCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTG TATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCC AAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATT TACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTG TAACAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5205#0      CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGA 60
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      GTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAG 120
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      GTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATG 180
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      GCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACG 240
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      AACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAG 300
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      GAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAA 360
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      AAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACA 420
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      AAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAA 480
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      AGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATT 540
consensus_5205#1      -----CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCC 55
                               *      *** **            ***   * * * **  *         

consensus_5205#0      CTTATTAAGGAAGGTTAATATAGTG-AAGTAAAACAGTAAGAGTCT-ATGAAAGCCACTA 598
consensus_5205#1      CGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTC 115
                      *   * *   * * ** *     *  **   **** **  ***  *    *****   * 

consensus_5205#0      AACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAA 658
consensus_5205#1      AGCA-GCGCT-TCACTTGTTTA-TGTGTTAGCACATCTAGCA--CCACGAACAAACGCTT 170
                      * ** * *   *** * ** **      **  * *   ****  * **  ***** **  

consensus_5205#0      ACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGA 718
consensus_5205#1      ACGACGT---GGCGCACGAGAACGTCCCCTTTTCACGAAATGCC---TTTCACAACTAGC 224
                      ** *       **  **    **   *    * **  * *         * * **  ** 

consensus_5205#0      ATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATA 778
consensus_5205#1      CTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCT---TTTTAATGGGGTTTTACC 281
                       **     *     ** * *******   *   * **     *   **  * *  * *  

consensus_5205#0      GAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGAT 838
consensus_5205#1      CCCTTTCCCGATGGAAAGCTACGAGGGCA----GAGTTGGAGTTCTTCTATTCGTTTGG- 336
                             *  *   ***  *   **   *      ***   * * ** ** *    **  

consensus_5205#0      GTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCA--AA 896
consensus_5205#1      ATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCA---TTTTATGGCGTTATGGCCTTTAT 393
                       ***  ** *          * ***   *   **   *** **  *   * *  *   * 

consensus_5205#0      TATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACT 956
consensus_5205#1      TCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGA------AAAAGAACT 447
                      *  *  ***   *** ***   ****     *   * * * *  *      ***  ****

consensus_5205#0      TATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAG- 1015
consensus_5205#1      TAATA--CAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATG-TGAGTGTGTTTGT 504
                      ** **   **** *  **** *    *    *    ***           *  ** * * 

consensus_5205#0      ACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTG 1075
consensus_5205#1      ATTTGTGCGTG-TAGTGGAAGTTGAAGACATATTTCCAAGGAAAAT-GCAGGAAATAATG 562
                      *  **    ** ** *  *      * **** ** ** * *  * * *  *    ** **

consensus_5205#0      TGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCT 1135
consensus_5205#1      AACAAACT--GCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCT----CTCTTTTTT 616
                         ** **  *** **  *       * *    *  ** *     **      ***   *

consensus_5205#0      TNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATT 1195
consensus_5205#1      TTTTTTAATCACACTATGCTGGAGTCTTTGTTTGT----CACCTTGTGTA-ACAA----- 666
                      * *  ** *   ** *   *  * *** *  **      * ** * * ** ****     

consensus_5205#0      CGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACC 1255
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      AACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGG 1315
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      GGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCC 1375
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      CACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNT 1435
consensus_5205#1      ------------------------------------------------------------
                                                                                  

consensus_5205#0      AACAACCCTCC 1446
consensus_5205#1      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)