These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1446 fasta sequence [CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAGGTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATGGCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACGAACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAGGAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAACCCTCC] [+] EMBL BM641634 [CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAGGTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATGGCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACGAACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAGGAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTA ] [+] EMBL BX627094 [ GAACAACGCTGAAAAGCTACATTGGAAGAGCTGCACACCGTGAGAAAGAGATAACAGCGAGGAATAAACTGTGCATAAAGTGTGAGGTAGACACTTAAAACATTAAACAAATGAAAAACAAAAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACAAAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAAAGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATTCTTATTAAGGAAGGTTAATATAGTGAAGTAAAACAGTAAGAGTCTATGAAAGCCACTAAACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAAACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGAATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATAGAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAA ] [+] EMBL AL695438 [ ccccggnttAATGGCAAAAGAGGATGATAGCGGAAGC AAAAANAANATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGATGTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCAAATATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACTTATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAGACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTGTGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCTTNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATTCGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACCAACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGGGGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCCCACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNTAACAACCCTCC] consensusID : consensus_5205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAGCGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGCGCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGCTACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCCAAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAA] [+] EMBL BM578240 [CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCCCGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTCAGCAGCGCTTCACTTGTTTATGTGTTAGCACATCTAGCACCACGAACAAACGCTTACGACGTGGCGCACGAGAACGTCCCCTTTTCACGAAATGCCTTTCACAACTAGCCTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCTTTTTAATGGGGTTTTACCCCCTTTCCCGATGGAAAGCTACGAGGGCAGAGTTGGAGTTCTTCTATTCGTTTGGATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCATTTTATGGCGTTATGGCCTTTATTCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGAAAAAGAACTTAATACAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATGTGAGTGTGTTTGTATTTGTGCGTGTAGTGGAAGTTGAAGACATATTTCCAAGGAAAATGCAGGAAATAATGAACAAACTGCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGAGTCTTTGTTTGTCACCTTGTGTAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5205#0 CGACCCACGCGTCCGTTGATTTACTGCTCTCTTTTTTTTTTTTAATCACACTATGCTGGA 60 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 GTCTTTGTTTGTCACCTTGTGTAACAACAAACACTAGCTCAGCTAACCAGCCATAATAAG 120 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 GTGGAGAACGTGAGGCAAACAGCAAATAAAGAACAGTAGAGTTTGATACCTGCTCTTATG 180 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 GCTATACTTAGCGAACGTTTGATAGTGAAAACAAAGCCACACAAATAGCATCTGCAAACG 240 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 AACAACACTGGAATGCTACATTGGAAGAGCTGCGCACCGTGGGAAAGAGATAACAGCGAG 300 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 GAGTAAACTGCGCATAAAGTGTGAGGTATACACTTAAAACATTAAACAAATGAAAAACAA 360 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 AAGCCCTAGACGAGTATGTTATATGATAAAACAAAATGGTAAATGATACAGCAACAAACA 420 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 AAACAAAGAAGAAACAATTCACACATATCAATTTCGTGCCCGATCATATTTGAACGATAA 480 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 AGTAGAGAAGAGAAGATTAAACAAATAACCTTTACTGCTGCCAGGTGAAGGCAACACATT 540 consensus_5205#1 -----CCGGGCTTTTGTTACACCCTGTTTTACCCCTGTCTCTAAGCGAGTGGGTGTTCCC 55 * *** ** *** * * * ** * consensus_5205#0 CTTATTAAGGAAGGTTAATATAGTG-AAGTAAAACAGTAAGAGTCT-ATGAAAGCCACTA 598 consensus_5205#1 CGCGTAAGCCACGCTTCAAGCGCTTCAACCTAAACGGTGCGAGCTTCGCTAAAGCGCTTC 115 * * * * * ** * * ** **** ** *** * ***** * consensus_5205#0 AACATGTGAAATCAATGGTGTAACAAAATACTAAACTAAGCAAACAACACACAAAAGCAA 658 consensus_5205#1 AGCA-GCGCT-TCACTTGTTTA-TGTGTTAGCACATCTAGCA--CCACGAACAAACGCTT 170 * ** * * *** * ** ** ** * * **** * ** ***** ** consensus_5205#0 ACAAAAAACAAGCATACATACACACGCAAAATGCAGCAGACATTAAACATTAAAAACAGA 718 consensus_5205#1 ACGACGT---GGCGCACGAGAACGTCCCCTTTTCACGAAATGCC---TTTCACAACTAGC 224 ** * ** ** ** * * ** * * * * ** ** consensus_5205#0 ATACAACATTGAATTACAAAAAAAAAATCTGTATGATGCAAATGGCAAAAGAGGATGATA 778 consensus_5205#1 CTAAGTTCTCTTGATATAGAAAAAAACGTTACGTTATCT---TTTTAATGGGGTTTTACC 281 ** * ** * ******* * * ** * ** * * * * consensus_5205#0 GAGGAAGCAAAAAAAAACATTTTAGAATATTAAACGTTAACGATGTTGTAATGAAATGAT 838 consensus_5205#1 CCCTTTCCCGATGGAAAGCTACGAGGGCA----GAGTTGGAGTTCTTCTATTCGTTTGG- 336 * * *** * ** * *** * * ** ** * ** consensus_5205#0 GTGTCGTGATGAAAAAAAAATACATTTATATTCAAAGTTTGATAACAAGAAGAGCA--AA 896 consensus_5205#1 ATGTTTTGTTATTTGCTTTTTCCATCCCTCCCCA---TTTTATGGCGTTATGGCCTTTAT 393 *** ** * * *** * ** *** ** * * * * * consensus_5205#0 TATGACACGTAGGCATGTAGCGATAATGGGGATGGAGAGCAACAACAAAAAAAAGAAACT 956 consensus_5205#1 TCGGGTACGGTAGCAAGTAAGTATAACCCAAACATAAAACGATGA------AAAAGAACT 447 * * *** *** *** **** * * * * * * *** **** consensus_5205#0 TATTAGCTAGATATACTGTGAACAAAAACAACAAAGATGAACCGCAACAGGCATGATAG- 1015 consensus_5205#1 TAATA--CAGATGTCGTGTGTATTTGATATGCGTGTATGCTTTATG-TGAGTGTGTTTGT 504 ** ** **** * **** * * * *** * ** * * consensus_5205#0 ACCTGCCTATGGTATTTTATTGCCTATACATCTTCCCGATGGCAGTAGGCGCGTGTAGTG 1075 consensus_5205#1 ATTTGTGCGTG-TAGTGGAAGTTGAAGACATATTTCCAAGGAAAAT-GCAGGAAATAATG 562 * ** ** ** * * * **** ** ** * * * * * * ** ** consensus_5205#0 TGTAATCTAAGCAGGCNCAGCGACAGAGATGGAACGGAGTAGTCACTAAGTTACTTGNCT 1135 consensus_5205#1 AACAAACT--GCATGCAAATTTGTTAAAAGTCCATTGATTTACTGCT----CTCTTTTTT 616 ** ** *** ** * * * * ** * ** *** * consensus_5205#0 TNTACTATTTCTACAACATTTAACTCTNTAATTTCAAAACCCCCTATATATACAAATATT 1195 consensus_5205#1 TTTTTTAATCACACTATGCTGGAGTCTTTGTTTGT----CACCTTGTGTA-ACAA----- 666 * * ** * ** * * * *** * ** * ** * * ** **** consensus_5205#0 CGGGTGATTGACACCGCTTGCTCGCACTCTAGGAGGCTATGGAAAACTGGTCCTTAGACC 1255 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 AACACACCATCACNNAGCANACAAACACACCACCACCCGGCCCTACACACGCCCACCAGG 1315 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 GGGAACGAACCACACGACACACACCACNCCACACACACGNACCANCACCCCCNCNAAGCC 1375 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 CACCCACGGCGCAACAANCTGGCCGAACAAACNCCTAACGACAGCNCGANGACCGANCNT 1435 consensus_5205#1 ------------------------------------------------------------ consensus_5205#0 AACAACCCTCC 1446 consensus_5205#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||