cluster # 5208

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Anopheles gambiae
cluster # 5208 cluster # 5208 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5208#0 length = 699 sequences # 3

consensus_5208#1 length = 619 sequences # 1

consensusID : consensus_5208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 699
fasta sequence

                              [CCGGAAATATCAACAGACTTTGACCCATTCAAATTTCTTCTCCTTAATCTTCCAAGTCAAATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAACTACTAGAGAACAATTTGTAGTTACATGCGATAACAATCCTTTACCGATGTGGGATCAAATTATCGGAACAGCTGTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCCTAAGCATCGAGCAGTACGTGATGCACCAAGACGGCGATCGGGTAATGGCGTTGATAGTGATGATCCACTGTGTGAGGTATGCGAAATACCACAGATGGGAGATGAAACTACTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCAAAATGTTTGAGCCTGTTTGCTTCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAGCGGAC-AGGC-CGAGT--AATAGCTGAAAGAGATTACCAACAAATTCCACTTTCGCGACAAATGTACTGTAGCTGCTTACGTAATTTACTCGGTTATCGGATTTCCGGTATGATATTAGATGTGATAATGGACTATACGTCATGGAGATTTTGTTTAGTTGTAAACCCTTAATGAATTTGGATGAACAGAATTTTACCATTGGTTGTGATTGTTGACAATTTTATTAAAGGAGATTCGTT]

[+] EMBL BM605499             [CCGGAAATATCAACAGACTTTGACCCATTCAAATTTCTTCTCCTTAATCTTCCAAGTCAAATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAACTACTAGAGAACAATTTGTAGTTACATGCGATAACAATCCTTTACCGATGTGGGATCAAATTATCGGAACAGCTGTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCCTAAGCATCGAGCAGTACGTGATGCACCAAGACGGCGATCGGGTAATGGCGTTGATAGTGATGATCCACTGTGTGAGGTATGCGAAATACCACAGATGGGAGATGAAACTACTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCAAAATGTTTGAGCCTGTTTGCTTCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAGCGGAC AGGC CGAGT  AATAGCTGAAAGAGATTACCAACAAATTCCACTTTCGCGACAAATGTACTGTAGCTGCTTACGTAATTTACTCGGTTATCGGATTTCCGGTATGATATTAGATGTGATAATGGACTATACGTCATGGAGATTTTGTTTAGTTGTAAACCCTTAATGAATTTGGATGAACAGAATTTTACCAT                                        ]
[+] EMBL BX614333             [                                      TCTCCTTAATCTTCCAAGTCAAATGCTT  ATAAAGCACTTCATCAGCTACGATACGCGGAAAGGCAAACACAGCTAGTAGAGAACAATTTGTAGTTGCATGCGATAACAATCCTTTACCGATGTGGGGTCAAATTATCGGAACAGCTGTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCCTAAGCATCGAGCATTACGTGATGGACCAAGACGGCGATCGGGTAACGGCGTTGAAAATGATGAGCCACTGTGTGAGGTATGCGAAATACCACAGATGGGAGATGAAACTACTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCAAAATGTTTGAGCCTGTTTGCTTCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCCTCAGCGGACAATACTCGACTTGTATAGCTGAAAGAGATTATCAACAAATTCCACTTTCGCGACAAATGTACTGTAGCTGCTTACGTAATTTACTCGGTTATCGGATTTCCGGTATGATATTAGATGTGATAATGGACTATACGTCATGGAGATTTTGTT                                                                                     ]
[+] EMBL BM606995             [                                                                                                                                                              ccgGTGGGATCAAATTATCGGAACAGCTTTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCCTAAGCACCGAGCAGTACGTGATGCACCAAGACGGCGATCGGGTAATGGCGTTGATAGTGATGATCCACTGTGTGAGGTATGCGAAATACCACAGATGGGAGATGAAAGTACTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCAAAATGTTTGAGCCTGTTTGCTTCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAACGGAC AGGC CGGGT  AATAGCTGAAAGAGATTACCAACAAATTCCACTTTCGCGACAAATGTACTGCAGCTGCTTACGTAATTTACTCGCTTATCGGATTTCCTGTATGATATTAGATGTGATAATGGACTATACGTCATGGAGATTTTGTTTAGTTGTAAACCC TCATGACTTTCGATGAACAGAATTTTACCATTGGTTGTGATTGTTGACAATTTTATTAAAGGAGATTCGTT]




>consensus_5208#0
CCGGAAATATCAACAGACTTTGACCCATTCAAATTTCTTCTCCTTAATCTTCCAAGTCAA
ATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAACTACTAGA
GAACAATTTGTAGTTACATGCGATAACAATCCTTTACCGATGTGGGATCAAATTATCGGA
ACAGCTGTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAAC
CCTAAGCATCGAGCAGTACGTGATGCACCAAGACGGCGATCGGGTAATGGCGTTGATAGT
GATGATCCACTGTGTGAGGTATGCGAAATACCACAGATGGGAGATGAAACTACTTGGAGA
AGGTTCGATTGTGGCCATTGCTATCATGCAAAATGTTTGAGCCTGTTTGCTTCCCAAAGT
TGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAGCGGACAGGCCGAGTAAT
AGCTGAAAGAGATTACCAACAAATTCCACTTTCGCGACAAATGTACTGTAGCTGCTTACG
TAATTTACTCGGTTATCGGATTTCCGGTATGATATTAGATGTGATAATGGACTATACGTC
ATGGAGATTTTGTTTAGTTGTAAACCCTTAATGAATTTGGATGAACAGAATTTTACCATT
GGTTGTGATTGTTGACAATTTTATTAAAGGAGATTCGTT

consensusID : consensus_5208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [CAGAATCCCCCGCAGGTTTAATCTTCCAAGGTCAAATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAGCTAGTAGAGAACAATTTGTAGTTGCATGCGATAACAATACCTTTACCGATGTGGGATCAAATTATCGGAACAGCTTTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCTAAGCACCGAGCAGTACGTGATGCACCAAGACGGCCGATCGGGTAATGGCGTTGATAAGTGATGATCCACTGTGTGAGGTATGCGAAATACCACAGCATGGNAGATGAAAGTACTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCACAANATGTTTGAGCCTGTNTGGTATCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAACGGACAGGCCGGGTAATAGCTGAAAGAGATTACCAACAAAATTCCACTTTCGCGACAAATGTACTGCAGCTGCTTACGTAATTTACTCGCTTATCGGATTNTCCTGTATGATATTCAACTGTGATAATGGACTATACGTCATGGNAGATNNACGNAATAGTATAGTAAACCCTCA]

[+] EMBL AL695569             [CAGAATCCCCCGCAGGTTTAATCTTCCAAGGTCAAATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAGCTAGTAGAGAACAATTTGTAGTTGCATGCGATAACAATACCTTTACCGATGTGGGATCAAATTATCGGAACAGCTTTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCTAAGCACCGAGCAGTACGTGATGCACCAAGACGGCCGATCGGGTAATGGCGTTGATAAGTGATGATCCACTGTGTGAGGTATGCGAAATACCACAGCATGGNAGATGAAAGTACTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCACAANATGTTTGAGCCTGTNTGGTATCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAACGGACAGGCCGGGTAATAGCTGAAAGAGATTACCAACAAAATTCCACTTTCGCGACAAATGTACTGCAGCTGCTTACGTAATTTACTCGCTTATCGGATTNTCCTGTATGATATTCAACTGTGATAATGGACTATACGTCATGGNAGATNNACGNAATAGTATAGTAAACCCTCA]




>consensus_5208#1
CAGAATCCCCCGCAGGTTTAATCTTCCAAGGTCAAATGCTTCCATAAAGCACTTCAGCGG
CTACGATACGCGGAAAGGCAAACACAGCTAGTAGAGAACAATTTGTAGTTGCATGCGATA
ACAATACCTTTACCGATGTGGGATCAAATTATCGGAACAGCTTTTGCTTTAGTTGGACTT
ATTGTCGCTTTTGTGCAGCTAAACTCACAGCGCAACCTAAGCACCGAGCAGTACGTGATG
CACCAAGACGGCCGATCGGGTAATGGCGTTGATAAGTGATGATCCACTGTGTGAGGTATG
CGAAATACCACAGCATGGNAGATGAAAGTACTTGGAGAAGGTTCGATTGTGGCCATTGCT
ATCATGCACAANATGTTTGAGCCTGTNTGGTATCCCAAAGTTGCTTCACCTGTGAACACA
TGGCTTCACTGCAAGCGCCTTCAACGGACAGGCCGGGTAATAGCTGAAAGAGATTACCAA
CAAAATTCCACTTTCGCGACAAATGTACTGCAGCTGCTTACGTAATTTACTCGCTTATCG
GATTNTCCTGTATGATATTCAACTGTGATAATGGACTATACGTCATGGNAGATNNACGNA
ATAGTATAGTAAACCCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5208#0      CCGGAAATATCAACAGACTTTGACCCATTCAAATTTCTTCTC---CTTAATCTTCCAAG- 56
consensus_5208#1      -----------------------------CAGAATCCCCCGCAGGTTTAATCTTCCAAGG 31
                                                   ** * * *  * *    ************* 

consensus_5208#0      TCAAATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAACTAC 116
consensus_5208#1      TCAAATGCTTCCATAAAGCACTTCAGCGGCTACGATACGCGGAAAGGCAAACACAGCTAG 91
                      ******************************************************* *** 

consensus_5208#0      TAGAGAACAATTTGTAGTTACATGCGATAACAAT-CCTTTACCGATGTGGGATCAAATTA 175
consensus_5208#1      TAGAGAACAATTTGTAGTTGCATGCGATAACAATACCTTTACCGATGTGGGATCAAATTA 151
                      ******************* ************** *************************

consensus_5208#0      TCGGAACAGCTGTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGC 235
consensus_5208#1      TCGGAACAGCTTTTGCTTTAGTTGGACTTATTGTCGCTTTTGTGCAGCTAAACTCACAGC 211
                      *********** ************************************************

consensus_5208#0      GCAACCCTAAGCATCGAGCAGTACGTGATGCACCAAGACGGC-GATCGGGTAATGGCGTT 294
consensus_5208#1      GCAACC-TAAGCACCGAGCAGTACGTGATGCACCAAGACGGCCGATCGGGTAATGGCGTT 270
                      ****** ****** **************************** *****************

consensus_5208#0      GATA-GTGATGATCCACTGTGTGAGGTATGCGAAATACCACAG-ATGGGAGATGAAACTA 352
consensus_5208#1      GATAAGTGATGATCCACTGTGTGAGGTATGCGAAATACCACAGCATGGNAGATGAAAGTA 330
                      **** ************************************** **** ******** **

consensus_5208#0      CTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCA--AAATGTTTGAGCCTGTTTGC 410
consensus_5208#1      CTTGGAGAAGGTTCGATTGTGGCCATTGCTATCATGCACAANATGTTTGAGCCTGTNTGG 390
                      **************************************  * ************** ** 

consensus_5208#0      T-TCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAGCGGACA 469
consensus_5208#1      TATCCCAAAGTTGCTTCACCTGTGAACACATGGCTTCACTGCAAGCGCCTTCAACGGACA 450
                      * *************************************************** ******

consensus_5208#0      GGCCGAGTAATAGCTGAAAGAGATTACCAACAAA-TTCCACTTTCGCGACAAATGTACTG 528
consensus_5208#1      GGCCGGGTAATAGCTGAAAGAGATTACCAACAAAATTCCACTTTCGCGACAAATGTACTG 510
                      ***** **************************** *************************

consensus_5208#0      TAGCTGCTTACGTAATTTACTCGGTTATCGGATTT-CCGGTATGATATTAGA-TGTGATA 586
consensus_5208#1      CAGCTGCTTACGTAATTTACTCGCTTATCGGATTNTCCTGTATGATATTCAACTGTGATA 570
                       ********************** **********  ** **********  * *******

consensus_5208#0      ATGGACTATACGTCATGGAGATTTTGTTTAGTTGTAAACCCTTAATGAATTTGGATGAAC 646
consensus_5208#1      ATGGACTATACGTCATGGNAGATNNACGNAATAGTA------TAGTAAACCCTCA----- 619
                      ******************    *      * * ***      ** * **     *     

consensus_5208#0      AGAATTTTACCATTGGTTGTGATTGTTGACAATTTTATTAAAGGAGATTCGTT 699
consensus_5208#1      -----------------------------------------------------