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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1028 fasta sequence
[CAGAATCCCCGAGGTTTAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCTGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGTGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGATCGGGAAATTCAAACACGCCTAAATGAAGGTACCTTAATTGGAGCCTGGTCGGCTGCGGCCGGATGCCTTGGGGAGTTGGCTTGCTCGGCCCTGTTCCTTCAACAAGGACCGGATTTGGTGATCCTTGGGGAAGTTGGGTCCAACAGAAAAACCAAATTTGGCCATCCAATTCCGGAATTAACACTTGGATTGGTCGGCATTTTTGAAACCAAAGGTACAAACTATTCTAAGCACCTATTTATCAAGTTTGTNATACTGGCGGTCTTGGGCGTTCTTNTCCCCGGCGAAGCAACATTCCCAATTCCAAAGGCGCTTAAACAGGGCCCGATATATCTTTACCCGGGCCCTTTTCCCCCCGGGCAAAATTGCCAGGTTGACAGGGTACCAAAGGGCAGCCATTCAATTCTTAACAGAAAACAAGTACAAAACATCGGCAGGCAATAGCTCTCNCAACCCCTTNTGGGCNACGGGGCGAATATGTCCTGGTTATCAATTCGCATTAACGGAAACNTAACTTCCCGNAAGGGGTTGGAAAAACCTCCCCCTTGGAAGGCCGGAATCCTCTCCCGAATTAAGAAAAGTCGNGGCGCCGGCCTTTTANCCAAAAACCCCTTGTGCCACAACATTNGGGGATTTCCAACAAGGCCTTGGCCGCCCGACAACCCCAAAACGNTAACCCCGNGGGCGTGGGGAACTTGGGGCGCACGACGTAACCCTTCCCTCCGGAACAAAGGCAAGNCGTACAGCAAAAACNCGATGCTATGACTTTAACANACACGGCGGCA]
[+] EMBL AL695570 [CAGAATCCCCGAGGTTTAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCTGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGTGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGATCGGGAAATTCAAACACGCCTAAATGAAGGTACCTTAATTGGAGCCTGGTCGGCTGCGGCCGGATGCCTTGGGGAGTTGGCTTGCTCGGCCCTGTTCCTTCAACAAGGACCGGATTTGGTGATCCTTGGGGAAGTTGGGTCCAACAGAAAAACCAAATTTGGCCATCCAATTCCGGAATTAACACTTGGATTGGTCGGCATTTTTGAAACCAAAGGTACAAACTATTCTAAGCACCTATTTATCAAGTTTGTNATACTGGCGGTCTTGGGCGTTCTTNTCCCCGGCGAAGCAACATTCCCAATTCCAAAGGCGCTTAAACAGGGCCCGATATATCTTTACCCGGGCCCTTTTCCCCCCGGGCAAAATTGCCAGGTTGACAGGGTACCAAAGGGCAGCCATTCAATTCTTAACAGAAAACAAGTACAAAACATCGGCAGGCAATAGCTCTCNCAACCCCTTNTGGGCNACGGGGCGAATATGTCCTGGTTATCAATTCGCATTAACGGAAACNTAACTTCCCGNAAGGGGTTGGAAAAACCTCCCCCTTGGAAGGCCGGAATCCTCTCCCGAATTAAGAAAAGTCGNGGCGCCGGCCTTTTANCCAAAAACCCCTTGTGCCACAACATTNGGGGATTTCCAACAAGGCCTTGGCCGCCCGACAACCCCAAAACGNTAACCCCGNGGGCGTGGGGAACTTGGGGCGCACGACGTAACCCTTCCCTCCGGAACAAAGGCAAGNCGTACAGCAAAAACNCGATGCTATGACTTTAACANACACGGCGGCA]
consensusID : consensus_5210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 921 fasta sequence
[CCGCAAGCGTTCGTGTACTTGCTGAAGGAGTTCCTTCCCGATATGTGCTGCTCGGTCGAGGGAGAAAGAAGCGTCTTCGGCAAGGCGGATCTTATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGTCATTGATCGAAAACTTCAAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGATTGTTAATTTCATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTTGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATACGGTAAAGGAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGAT]
[+] EMBL BM597266 [CCGCAAGCGTTCGTGTACTTGCTGAAGGAGTTCCTTCCCGATATGTGCTGCTCGGTCGAGGGAGAAAGAAGCGTCTTCGGCAAGGCGGATCTTATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGTCATTGATCGAAAACTTCAAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGATTGTTAATTTCATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTAGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGT ]
[+] EMBL BM588078 [ ccGGAGAAAGAAGCGTCTTCGGCAAGGCGGATCTGATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGTCATTGATCGAAAACTTCAAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGATTGTTAATTTCATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTTGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATA ]
[+] EMBL BX622950 [ ACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTGCTTGCACTAAAGCTCACCCAAACCTCCATCGAGCACTTCCTGGCACCAAACCTTGCCCTGCTGATGGATAATATCTCTGGATCGGGACTGGAACATGTTGGCCACATAATCTATAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATCGATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGATATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGCGCTTCGGCCCTTCGCTGCCTGACGTTGATGGTCAAGATTCGGTTGCTGTGGGATCATTCGCTTTCCAAGCTTTCCTTAATGAATCACCTGATCGACGTTATCGATAACGAAAGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATACGGTAAAGGAAATCTACGCCAATCATAAAATACAACCGCAATGTTTGGACAGTGTGTTTTCCGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGGTGAAGATTAATGCGCTTCAGTTTTGGCGCCTGGTTATGTGCCGACAGTTTCAACATCAAGGGATGATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCACCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5210#0 CAGAATCCCCGAGGTTTAAATCTACGCCAATCATAAAATACAACCGCA-ATGTTTGGACA 59
consensus_5210#1 -------------------------------------CCGCAAGCGTTCGTGTACTTGCT 23
*** ** *** *
consensus_5210#0 GTGTGTTTTCCTGTGCTAGCGTATGCTGCCGCAAACGATCTGTACTGGGAGTGTGAAGAT 119
consensus_5210#1 GAAGGAGTTCCT-TCCCGATATGTGCTGCTCGGTCGAGGGAGAAAGAAGCGTCTTCGGCA 82
* * ***** * * * ****** * * * ** * *
consensus_5210#0 TAATGCGCTTCAGTTTTGGCG--CCTGGTTATGTGCCGACAGTT-TCAACATCAAGGGAT 176
consensus_5210#1 AGGCGGATCTTATGCTAAGCAAACCTAATCTCCTGTCCGCAATCATCAATGGGTTGATGT 142
* * * * ** *** * ** * ** * **** * *
consensus_5210#0 GATTGACGGAACCTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACT 236
consensus_5210#1 CATTGATCGAAAACTTC-----AAAATCACCTGGAAAGAGTGCATCGAATCGACAGCGAT 197
***** *** * * ** ** *** *** * ** * *
consensus_5210#0 CACCGATCGGGAAATTCAAACACGCCTAAATGAAGGTACCTTAATTGGAGCCTGGTCGGC 296
consensus_5210#1 TGTTAATTTC--ATGCTAAACTTGCTGGCAAACCCCAATCTTCCTCCGAGGCTGGTCGTG 255
** * **** ** * * *** * *** *******
consensus_5210#0 TGCGGCCGGATGCCTTGGGGAGTTGGCTTGCTCGGCCCTGTTCCTTCAACAAGGACCGGA 356
consensus_5210#1 CTTGCACTAAAGCTCACCCAAAC---CTCCATCGAGCAC-TTCCTGGCACCAAACCTTGC 311
* * * ** * ** *** * ***** ** * * *
consensus_5210#0 TTTGGTGATCCTTGGGGAAGTTGGGTCCAACAGAAAAACCAAATTTGGCCATCCAATTCC 416
consensus_5210#1 CCTGCTGATGGATAATATCTCTGGATC-GGGACTGGAAC--ATGTTGGCCACATAATCTA 368
** **** * *** ** * *** * ******* ***
consensus_5210#0 GGAATTAACACTTGGATT-GGTCGGCATTTTTGAAACCAAAGGTACAAACTATTCTAAGC 475
consensus_5210#1 TAAACGCCTGCACGATCTCAGCTGGGAGGCAAGGGATTCGGCACTCGAGTTGCTCGCATC 428
** * * * * ** * * * * * * ** * *
consensus_5210#0 ACCTATT--TATCAAGTTTGTNATACTGGCGGTCTTGGGCGTTCTTNTCCCCGGCGAAGC 533
consensus_5210#1 GATTGTCAGCATATCGGAAATCAAATTTCCCGCTTTCCAAAAGCATATTCTCGATTGTGA 488
* * ** * * * * * * * ** * * * * ** *
consensus_5210#0 AACATTCCCAATTCCAAAGGCGCTTAAACAGGGC----CCGA----TATATCTTTACCCG 585
consensus_5210#1 TATCATCCCGGTTGTAGAAGCTGCAGCAAAGAACGACACCGAAGCGTACGTCCGTGCTTC 548
* **** ** * * ** * ** * **** ** ** * *
consensus_5210#0 GGCCCTTTTCCCCCCGGGCAAAATTGCCAGGTTGACAGGGTACCAAAGGGCAGCCATTCA 645
consensus_5210#1 GGCCCTTCGCTGCCTGACGTTGATGGTCAAGAT--TCGGTTGCTGTGGGA---TCATTCG 603
******* * ** * ** * ** * * ** * * ** *****
consensus_5210#0 ATTCTTAACAGAAAACAAGTACAAAACATCGGCAGGCAATAGCTCTCNCAACCCCTTNTG 705
consensus_5210#1 CTTTCCAAGCTTTCCTTAATGAATCACCT-GATCGACGTTATCGATAACGA--------A 654
** ** * * * ** * * * * ** * * * *
consensus_5210#0 GGCNACGGGGCGAAT-ATGTCCTGGTTATCAATTCGCATTAACGGAAACNTAACTTCCCG 764
consensus_5210#1 AGTGAAGGAGTGGTTCGTCGCGAAGCGGTCAATACG--GTAAAGGAAATCTA------CG 706
* * ** * * * * * * ***** ** *** ***** ** **
consensus_5210#0 NAAGGGGTTGGAAAAACCTCCCCCTTGGAAGGCCGGAATCCTCTCCCGAATTAAGAAAAG 824
consensus_5210#1 CCAATCAT--AAAATACAACCGCAATGTTTGGACAGTGTG-TTTTCCGTGCTAGCGTATG 763
* * *** ** ** * ** ** * * * * * *** ** * *
consensus_5210#0 TCGNGGCGCCGGCCTTTTANCCAAAAACCCCTTGTGCCACAACATTNGGGGATTTCCAAC 884
consensus_5210#1 CTGCCGCAAACGATCTGTACTGGGAG-------GTG----AAGATTAATGCGCTTCAGTT 812
* ** * * ** * *** ** *** * ***
consensus_5210#0 AAGGC-CTTGGCCGCCCGACAACCCCAAAACGNTAACCCCGNGGGCGTGGGGAACTTGGG 943
consensus_5210#1 TTGGCGCCTGGTTATGTGCCGAC-----AGTTTCAACATCAAGGG-ATGATTGACGGAAC 866
*** * *** * * ** * *** * *** ** **
consensus_5210#0 GCGCACGACGTAACCCTTCCCTCCGGAACAAAGGCAAGNCGTACAGCAAAAACNCGATGC 1003
consensus_5210#1 CTTCCCTGCGGTAACGTTCTCGAAGGAGCATAAAAAAATCGTTACACTCA---CCGAT-- 921
* * ** * * *** * *** ** * ** *** * * ****
consensus_5210#0 TATGACTTTAACANACACGGCGGCA 1028
consensus_5210#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||