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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1286 fasta sequence
[CCGCGAATGTACAGTGTAGCAAATTGGAACCCACTTTGACAGTAAAGATCGTGCGGGATTGATTGTGTGAGTGTGATTTACAGTTAATAGTCCAATTTAAACACTGGCAACCGGTGTGCCAGATACTCTCCGGAACTCGTTTATGCGCGCAAGGCAGCCCGCGCTTGTTCATTAGAGTATGTTGTATATTCTAGTAAAAAAAAAAACAAAGTCACAAACCACACGTGCATATACACCTTAGACAGAAGACAAACAGACTATTAAGATGCTACGCTAAACAAAAACACAAAACACATGCAAACGTACTCTAGTGGATAGGGAATGATCGATTTTTCAGTTCCTGATCTTTTGTGGTTTTACACAAAAAGAACGTGCAGGAGGATGAGAAAAAAGGAGTAGTAAAATGCTGTAAAATTAGTAGCGAAATTATTATTACCACTTACCGTAAATGCCGAGCTGCCCATCGGCTCGGACTGTTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAACCGCTCCAATGCTCGCAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGACATAGGGAGGGA-AGGGACAGTTT-CGTGCCAGGGAGGAGGCCATTT-GTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTGTGCCAGCGTGGCTCGATGATGGTGGCTATTTGCCATCAAGTCGGCACAAATGCATCATGTAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTCCGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGTACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAACCCTGTTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGAAAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTTTCAGTCACGGACGCTTTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGNACTCGTTTTTCTTTATTTCCTTTCTTAAACCCAATGGGTTGTTGGTGAATGGTATACATTTTGTAAAAATATTCTATTTATTTCGTAGGAAACGATTCTGCTACTGTTCAGCGTTTGCGAAACGTTCACACACTTTTATCCTCGACTGAGCAAAAGAA]
[+] EMBL BM625313 [CCGCGAATGTACAGTGTAGCAAATTGGAACCCACTTTGACAGTAAAGATCGTGCGGGATTGATTGTGTGAGTGTGATTTACAGTTAATAGTCCAATTTAAACACTGGCAACCGGTGTGCCAGATACTCTCCGGAACTCGTTTATGCGCGCAAGGCAGCCCGCGCTTGTTCATTAGAGTATGTTGTATATTCTAGTAAAAAAAAAAACAAAGTCACAAACCACACGTGCATATACACCTTAGACAGAAGACAAACAGACTATTAAGATGCTACGCTAAACAAAAACACAAAACACATGCAAACGTACTCTAGTGGATAGGGAATGATCGATTTTTCAGTTCCTGATCTTTTGTGGTTTTACACAAAAAGAACGTGCAGGAGGATGAGAAAAAAGGAGTAGTAAAATGCTGTAAAATTAGTAGCGAAATTATTATTACCACTTACCGTAAATGCCGAGCTGCCCATCGGCTCGGACTGTTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAACCGCTCCAATGCTCGCAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGACATAGGGAGGGATAGGGACAGTTTCCGTGCCAGGGAGGAGGCCATTTGGTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACAGAC ]
[+] EMBL BX626862 [ CGAGCTGCCCATCGGCTCGGACTGTTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAACCGCTCCAATGCTCGCAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGACAGAGGGAGGGA GAGGACAGTTT CGTGCCAGGGAGGAGGCCATTT GTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTGTGCCAGCGTGGCTCGATGATGGTGGCTATTTGCCATCAAGTCGGCACAAATGCATCATGTAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTCCGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGTACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAACCCTGTTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGAAAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTTTCAGTCACGGACGCTTTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGNACTCGTTTTTCTTTATTT ]
[+] EMBL BM578670 [ ccGGGACAGTTT CGTGCCAGGGAGGAGGCCATTT GTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTGTGCCAGCGTGGCTCGATGATGGTGGCTATTTGCCATCAAGTCGGCACAAATGCATCATGTAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTCCGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGTACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAACCCTGTTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGAAAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTTTCAGTCACGGACGC TTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGTACTCGTTTTTCTTTATTTCCTTTCTTAAACCCAATGGGTTGTTGGTGAATGGTATACATTTTGTAAAAATATTCTATTTATTTCGTAGGAAACGATTCTGCTACTGTTCAGCGTTTGCGAAACGTTCACACACTTTTATCCTCGACTGAGCAAAAGAA]
consensusID : consensus_5214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1044 fasta sequence
[GCAGATCCCCGACGGTTAAAACTGTTTGCTGTTTGGAACGAAGTTAACCATATTATACCACAAGTTTGCCAACTGCGCTTACCCCTTGGACAGCGTTTCAGTCACAGACGCTTTTCACGGGCGCGTGCAGCAGTCAAGGCAAGAATAATTGTACTACGTTTTTACTATATATAATCCTTTCTTCAAACCCAATGGGTTAGTACGGTGCAATGCGTTGTATACATNTTAGTAAANACATATTCTATATCATTTCGTCAGGGAAACGATTTCTGCTAACTGGTNCCAGCGGTTATGGCGAAAACGTTCAACACAACTAATAATTCCTTCGCACTTGGCAGCCACAAAAGAAAGGCTAACGAACACAGTTGAGGTTGNGCGCANNAGAAGTNCCAAGTTTACCCCGGGGAAACCACCGAATGCTCCACTATTGANTGTCAGNTGGTCATGGTCCCCGACAACATTAGGCCGAGAAGGANATTATTTGGCCAACAAATGTCAACAAGNACACAACCAAGCAGTGGGCTCCACGGGGATTGCGGGAAACCCCAAGGAACAGCAATATTGGTTTAAAGATTTATCTTCCGCACCANCTTCGGGAAAGTATAATCGGCTACTCTGNAACACAACNAGACAGGACAAAATACAAGGAAACNATTGAATTNGGTCGGTANACCCACAGCTAACTTGGATGTAATTTCAGCCAGGAACATCAAACACCCNTACAGAGTCTGGAAANATTCNANAACTATTATCAAGACGATGGAATTTTTACCCCGCANCATACGGCCATTNTCCTGCCCCCGCCCCANAANTGATTCAANCGGCCCCGNAAGTGCAAAAAGTGGGAGTGTGATGGTACCCGGAACGGAGNAAGTAAAGTCNAGATATGGGACATGGACAGTGTACTTTCCTGGATGGATTNTAGCAGACGTATTGCACCAACACTANTATCGGAATCTAACGACTGGAAGTGTAATTGGCCATGTATGGGGAAAACGAAGGNNAACACGGATCTACNCCCGACATACTTTGGCTGGNCCAGAG]
[+] EMBL AL695640 [GCAGATCCCCGACGGTTAAAACTGTTTGCTGTTTGGAACGAAGTTAACCATATTATACCACAAGTTTGCCAACTGCGCTTACCCCTTGGACAGCGTTTCAGTCACAGACGCTTTTCACGGGCGCGTGCAGCAGTCAAGGCAAGAATAATTGTACTACGTTTTTACTATATATAATCCTTTCTTCAAACCCAATGGGTTAGTACGGTGCAATGCGTTGTATACATNTTAGTAAANACATATTCTATATCATTTCGTCAGGGAAACGATTTCTGCTAACTGGTNCCAGCGGTTATGGCGAAAACGTTCAACACAACTAATAATTCCTTCGCACTTGGCAGCCACAAAAGAAAGGCTAACGAACACAGTTGAGGTTGNGCGCANNAGAAGTNCCAAGTTTACCCCGGGGAAACCACCGAATGCTCCACTATTGANTGTCAGNTGGTCATGGTCCCCGACAACATTAGGCCGAGAAGGANATTATTTGGCCAACAAATGTCAACAAGNACACAACCAAGCAGTGGGCTCCACGGGGATTGCGGGAAACCCCAAGGAACAGCAATATTGGTTTAAAGATTTATCTTCCGCACCANCTTCGGGAAAGTATAATCGGCTACTCTGNAACACAACNAGACAGGACAAAATACAAGGAAACNATTGAATTNGGTCGGTANACCCACAGCTAACTTGGATGTAATTTCAGCCAGGAACATCAAACACCCNTACAGAGTCTGGAAANATTCNANAACTATTATCAAGACGATGGAATTTTTACCCCGCANCATACGGCCATTNTCCTGCCCCCGCCCCANAANTGATTCAANCGGCCCCGNAAGTGCAAAAAGTGGGAGTGTGATGGTACCCGGAACGGAGNAAGTAAAGTCNAGATATGGGACATGGACAGTGTACTTTCCTGGATGGATTNTAGCAGACGTATTGCACCAACACTANTATCGGAATCTAACGACTGGAAGTGTAATTGGCCATGTATGGGGAAAACGAAGGNNAACACGGATCTACNCCCGACATACTTTGGCTGGNCCAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5214#0 CCGCGAATGTACAGTGTAGCAAATTGGAACCCACTTTGACAGTAAAGATCGTGCGGGATT 60
consensus_5214#1 ------------------------------------------------------------
consensus_5214#0 GATTGTGTGAGTGTGATTTACAGTTAATAGTCCAATTTAAACACTGGCAACCGGTGTGCC 120
consensus_5214#1 -----------------------------------GCAGATCCCCGACGGTTAAA--ACT 23
* * * * * *
consensus_5214#0 AGATACTCTCCGGAACTCGTTTATGCGCGCAAGGCAGCCCGCGCTTGTTCATTAGAGTAT 180
consensus_5214#1 GTTTGCTGTTTGGAACGAAGTTAACCATATTATAC--CACAAGTTTGCCAACTG-----C 76
* ** * ***** *** * * * * * * *** * *
consensus_5214#0 GTTGTATATTCTAGTAAAAAAAAAAACAAAGTCACAAACCACACGTGCATATACACCTTA 240
consensus_5214#1 GCTTACCCCTTGGACAGCGTTTCAGTCACAGACGCTTTTCACGGGCGCGTGCAGCAGTCA 136
* * * * * ** ** * * *** * ** * * * *
consensus_5214#0 GACAGAAGACAAACAGACTATTAAGATGCTACGC-TAAACAAAAACACAAAACACATGCA 299
consensus_5214#1 AGGCAAGAATAATTGTACTACGTTTTTACTATATATAATCCTTTCTTCAAACCCAATGGG 196
* * ** **** * *** *** * **** * ***
consensus_5214#0 AACGTACTCTAGTGGATAGGGAATGATCGATTTTTCAGTTCCTGATCTTTTGTGGTTTTA 359
consensus_5214#1 TTAGTACGGTG--CAATGCGTTGTATACATNTTAGTAAANACATATTCTATATCATTTCG 254
**** * ** * * * ** * * ** * * * ***
consensus_5214#0 -CACAAAAAGAACGTGCAGGAGGATGAGAAAAAAGGAGTAGTAAAATGCTGTAAAATTAG 418
consensus_5214#1 TCAGGGAAACGATTTCTGCTAACTGGTNCCAGCGGTTATGGCGAAAACGTTCAACACAAC 314
** *** * * * * * * * * *** * ** * *
consensus_5214#0 TAGCGAAATTATTATTACCACTTACCGTAAATGCCGAGCTGCCCATCG--GCTCGGACTG 476
consensus_5214#1 TAATAATTCCTTCGCACTTGGCAGCCACAAAAGAAAGGCTAACGAACACAGTTGAGGTTG 374
** * * ** *** * *** * * * * * * **
consensus_5214#0 TTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAAC 536
consensus_5214#1 NGCGCANNAGAAGTNC-------CAAGTTTACCCCGGG----GAAACCACCGAATG---C 420
*** * * *** *** * * * * *** * ** *
consensus_5214#0 CGCTCCAATGCTCG-CAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGAC 595
consensus_5214#1 TCCACTATTGANTGTCAGNTGGTCATGGTCCC----CGACAACATTAGGCCGAGAAGGAN 476
* * * ** * ** **** ** * * * * *** ******
consensus_5214#0 ATAGGGAGGGAAGGGACAGTTTCGTGCCAGGGAGGAGGCCATTTGTTTACGATGTAAACT 655
consensus_5214#1 ATTATTTGGCCAACAA-------ATGTCAACAAGNACACAACCAAGCAGTGGGCTCCACG 529
** ** * * ** ** ** * * * * * **
consensus_5214#0 GGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTG 715
consensus_5214#1 GGGATTGCGGGAAACCCCAAG-----GAACAGCAATATTGGTTTAAAGATTTATCTTCCG 584
** ** *** * ** *** *** * * * *** * *
consensus_5214#0 TGCCAGCGTGGCTCGATGATGGT-GGCTATTTGCCATCAAGTCGGCACAAATGCATCATG 774
consensus_5214#1 CACCANCTTCGGGAAAGTATAATCGGCTACTCTGNAACACAACNAGACAGG-ACAAAATA 643
*** * * * * ** * ***** * * ** * *** ** **
consensus_5214#0 TAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTC 834
consensus_5214#1 CAA----GGAAACNATTGAATTNGGTCGGTANACCCACAGC---TAACTTG---GATGTA 693
** ** * ** * ** * * * *** ** *** * *
consensus_5214#0 CGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGT 894
consensus_5214#1 ATTTCAGCCAGG-AACATCAAACACCCNTACAGAGTCTGGAAANATTCNANAACTATTAT 752
***** * * ** * ** *** * * * * ***** * *
consensus_5214#0 ACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAA 954
consensus_5214#1 CAAGACGATGGAA--------TTTTTACCCCGCANCATACGGCCATTNTCCTGCCCCCGC 804
***** ** ** **** ** * ** * * ****
consensus_5214#0 CCCTG--TTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGA 1012
consensus_5214#1 CCCANAANTGATTCAANCGGCCCCGNAAGTGCAAAAAGTGGGAGTGTGATGGTACCCGGA 864
*** **** *** * ** * *** ** * ***
consensus_5214#0 AAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTT 1072
consensus_5214#1 ACGGAGNAAGTAAAGTCNAGATATGGGAC-ATGGACAGTGTACTTTCCTGGA--TGGATT 921
* * ** * * * * ** * * ***** * **
consensus_5214#0 TCAGTCACGGACGCTTTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGNACTC 1132
consensus_5214#1 NTAG---CAGACG-TATTGCACCAACAC---TANTATCGGAATCT--AACGACTGGAAGT 972
** * **** * ** *** *** * * * * ** * ** *
consensus_5214#0 GTTTTTCTTTATTTCCTTTCTTAAACCCAATGGGTTGTTGGTGAATGGTATACATTTTGT 1192
consensus_5214#1 GTAATTGGCCATGTA---TGGGGAAAACGAAGGNNAAC-----ACGGATCTACNCCC--- 1021
** ** ** * * ** * * ** * * * ***
consensus_5214#0 AAAAATATTCTATTTATTTCGTAGGAAACGATTCTGCTACTGTTCAGCGTTTGCGAAACG 1252
consensus_5214#1 -GACATACTTTGGCTGGNCCAGAG------------------------------------ 1044
* *** * * * * **
consensus_5214#0 TTCACACACTTTTATCCTCGACTGAGCAAAAGAA 1286
consensus_5214#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||